Publications HAL de la collection AMAP

2024

Journal articles

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Beda Innocent Adji, Xiujuan Wang, Véronique Letort, Doffou Sélastique Akaffou, Sylvie-Annabel Sabatier, et al.. Stochastic modelling of development and biomass allocation: Computation applied to architecture of young mahogany trees (Khaya senegalensis Desr. A. Juss), a native African savannah emblematic agroforestry species. Computers and Electronics in Agriculture, 2024, 220, pp.108864. ⟨10.1016/j.compag.2024.108864⟩. ⟨hal-04560276⟩
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Rickarlos Bezandry, Mathilde Dupeyron, Laura Natalia Gonzalez-Garcia, Artemis Anest, Perla Hamon, et al.. The evolutionary history of three Baracoffea species from western Madagascar revealed by chloroplast and nuclear genomes. PLoS ONE, 2024, 19, ⟨10.1371/journal.pone.0296362⟩. ⟨hal-04448243⟩
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Francesca Grisafi, Sergio Tombesi, Daniela Farinelli, Evelyne Costes, Jean-Baptiste Durand, et al.. Modelling the architecture of hazelnut ( Corylus avellana ) Tonda di Giffoni over two successive years. in silico Plants, 2024, 6 (1), pp.diae004. ⟨10.1093/insilicoplants/diae004⟩. ⟨hal-04583890v2⟩
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Mathilde Millan, Alexis Bonnet, Jean Dauzat, Rémi Vezy. Advancing Fine Branch Biomass Estimation with Lidar and Structural Models. Annals of Botany, In press, ⟨10.1093/aob/mcae083⟩. ⟨hal-04603780⟩
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Raphael Perez, Rémi Vezy, Romain Bordon, Thomas Laisné, Sandrine Roques, et al.. Combining modeling and experimental approaches for developing rice–oil palm agroforestry systems. Journal of Experimental Botany, In press, pp.erae137. ⟨10.1093/jxb/erae137⟩. ⟨hal-04580715⟩
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Sidy Sow, Yolande Senghor, Khardiatou Sadio, Rémi Vezy, Olivier Roupsard, et al.. Calibrating the STICS soil-crop model to explore the impact of agroforestry parklands on millet growth. Field Crops Research, 2024, 306, pp.109206. ⟨10.1016/j.fcr.2023.109206⟩. ⟨hal-04426468⟩
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Xiujuan Wang, Jing Hua, Mengzhen Kang, Haoyu Wang, Philippe de Reffye. Functional–Structural Plant Model “GreenLab”: A State-of-the-Art Review. Plant Phenomics, 2024, 6, ⟨10.34133/plantphenomics.0118⟩. ⟨hal-04522903⟩
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2023

Journal articles

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Yélognissè Agbohessou, Claire Delon, Eric Mougin, Manuela Grippa, Torbern Tagesson, et al.. To what extent are greenhouse-gas emissions offset by trees in a Sahelian silvopastoral system?. Agricultural and Forest Meteorology, 2023, 343, ⟨10.1016/j.agrformet.2023.109780⟩. ⟨hal-04264171⟩
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https://hal.inrae.fr/hal-04264171/file/Agbohessou_etal_Agricultural_For-Meteo_2023_343.pdf BibTex
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Laëtitia Lemière, Marc Jaeger, Marie Gosme, Gérard Subsol. Combinatorial maps, a new framework to model agroforestry systems. Plant Phenomics, 2023, 5, pp.0120. ⟨10.34133/plantphenomics.0120⟩. ⟨hal-04344009⟩
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Houssem E M Triki, Fabienne Ribeyre, Fabrice Pinard, Marc Jaeger. Coupling Plant Growth Models and Pest and Disease Models: An Interaction Structure Proposal, MIMIC. Plant Phenomics, 2023, 5, pp.0077. ⟨10.34133/plantphenomics.0077⟩. ⟨hal-04218531⟩
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Rémi Vezy. PlantSimEngine: A Simulation Engine For The Soil-Plant-Atmosphere System. Journal of Open Source Software, 2023, 8, ⟨10.21105/joss.05371⟩. ⟨hal-04166660⟩
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Rémi Vezy, Sebastian Munz, Noémie Gaudio, Marie Launay, Patrice Lecharpentier, et al.. Modeling soil-plant functioning of intercrops using comprehensive and generic formalisms implemented in the STICS model. Agronomy for Sustainable Development, 2023, 43 (5), pp.61. ⟨10.1007/s13593-023-00917-5⟩. ⟨hal-04189857⟩
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https://hal.inrae.fr/hal-04189857/file/2023-gaudio-STICS-intercrop_new_formalisms_5.3.0.pdf BibTex

2022

Journal articles

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Raphael P. A. Perez, Rémi Vezy, Loïc Brancheriau, Frédéric Boudon, François Grand, et al.. When architectural plasticity fails to counter the light competition imposed by planting design: an in silico approach using a functional–structural model of oil palm. in silico Plants, 2022, 4 (1), ⟨10.1093/insilicoplants/diac009⟩. ⟨hal-03736274⟩
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Haoyu Wang, Jing Hua, Mengzhen Kang, Xiujuan Wang, Xing-Rong Fan, et al.. Stronger wind, smaller tree: Testing tree growth plasticity through a modeling approach. Frontiers in Plant Science, 2022, 13, ⟨10.3389/fpls.2022.971690⟩. ⟨hal-03888028⟩
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https://hal.inrae.fr/hal-03888028/file/Wang_etal_Frontiers_Plant_Sci_2022_13.pdf BibTex

2021

Journal articles

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Beda Innocent Adji, Doffou Sélastique Akaffou, Kouadio Henri Kouassi, Yao Patrice Houphouet, Philippe de Reffye, et al.. Allometric models for non-destructive estimation of dry biomass and leaf area in Khaya senegalensis (Desr.) A. Juss (Meliaceae), Pterocarpus erinaceus Pear. (Fabaceae) and Parkia biglobosa, Jack, R. Br. (Fabaceae). Trees - Structure and Function, 2021, 35, pp.1905-1920. ⟨10.1007/s00468-021-02159-y⟩. ⟨hal-03272359⟩
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Roberta Dainese, Alessandro Tarantino. Measurement of plant xylem water pressure using the high-capacity tensiometer and implications for the modelling of soil–atmosphere interaction. Geotechnique, 2021, 71 (5), pp.441-454. ⟨10.1680/jgeot.19.P.153⟩. ⟨hal-03222923⟩
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Philippe de Reffye, Baogang Hu, Mengzhen Kang, Véronique Letort, Marc Jaeger. Two decades of research with the GreenLab model in Agronomy. Annals of Botany, 2021, 127 (3), pp.281-295. ⟨10.1093/aob/mcaa172⟩. ⟨hal-02950606⟩
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Mengzhen Kang, Xiujuan Wang, Rui Qi, Zhi-Qi Jia, Philippe de Reffye, et al.. Analyzing and optimizing yield formation of tomato introgression lines using plant model. Euphytica, 2021, 217 (6), pp.100. ⟨10.1007/s10681-021-02834-8⟩. ⟨hal-03708831⟩
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Grégoire Leclerc, Pierre Bommel, Natacha Motisi, Rémi Vezy, Edwin Treminio, et al.. Coffee leaf rust (Hemeleia vastatrix) risk management in Central America: contribution of remote interactive simulations. Agronomie, Environnement & Sociétés, 2021, 11 (2), ⟨10.54800/roc535⟩. ⟨hal-03531784⟩
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Soualihou Soualiou, Zhiwei Wang, Weiwei Sun, Philippe de Reffye, Brian Collins, et al.. Functional–structural plant models mission in advancing crop science: opportunities and prospects. Frontiers in Plant Science, 2021, 12, pp.1-12. ⟨10.3389/fpls.2021.747142⟩. ⟨hal-03744298⟩
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https://hal.inrae.fr/hal-03744298/file/LouarG_FrontiersPlantSci_2021.pdf BibTex

2020

Journal articles

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Véronique Letort, Sylvie Sabatier, Michelle Pamelas Okoma, Marc Jaeger, Philippe de Reffye. Internal trophic pressure, a regulator of plant development? Insights from a stochastic functional–structural plant growth model applied to Coffea trees. Annals of Botany, 2020, 126 (4), pp.687-699. ⟨10.1093/aob/mcaa023⟩. ⟨hal-02945618⟩
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Virginie Moreaux, Simon Martel, Alexandre Bosc, Delphine Picart, David Achat, et al.. Energy, water and carbon exchanges in managed forest ecosystems: description, sensitivity analysis and evaluation of the INRAE GO+ model, version 3.0. Geoscientific Model Development Discussions, 2020, 13 (12), pp.5973-6009. ⟨10.5194/gmd-13-5973-2020⟩. ⟨hal-03051411⟩
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Rémi Vezy, Guerric Le Maire, Mathias Christina, Selena Georgiou, Pablo Imbach, et al.. DynACof: A process-based model to study growth, yield and ecosystem services of coffee agroforestry systems. Environmental Modelling and Software, 2020, 124, pp.104609. ⟨10.1016/j.envsoft.2019.104609⟩. ⟨hal-02488996⟩
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https://hal.umontpellier.fr/hal-02488996/file/2-Coffee_Growth_and_Yield_model_V7.0.0.pdf BibTex