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M. Sabart, D. Pobel, D. Latour, J. Robin, Mj Salençon, et al.. Spatiotemporal changes in the genetic diversity in French bloom-forming populations of the toxic cyanobacterium, Microcystis aeruginosa. Environmental Microbiology Reports, Wiley, 2009, 1 (4), pp.263-272. 〈10.1111/j.1758-2229.2009.00042.x〉. 〈bioemco-00452843〉
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John Dolan, B. Mostajir, Télesphore Sime-Ngando. Rassoulzadegan@Villefranche : 3 Decades of Aquatic Microbial Ecology. Microbial Ecology, Springer Verlag, 2009, 57 (3), pp.1. 〈hal-00528558〉
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J. Colombet, M. Charpin, A. Robin, C. Portelli, Cécile Amblard, et al.. Seasonal depth-related gradients in virioplankton: standing stock and relationships with microbial communities in Lake Pavin (France). Microbial Ecology, Springer Verlag, 2009, 58 (4), pp.728-36. 〈10.1007/s00248-009-9535-7〉. 〈hal-00527098〉
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Cristiana Callieri, Gianluca Corno, Emanuele Caravati, Serena Rasconi, Mario Contesini, et al.. Bacteria, archaea, and crenarchaeota in the epilimnion and hypolimnion of a deep holo-oligomictic lake.. Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75 (22), pp.7298-300. 〈10.1128/AEM.01231-09〉. 〈hal-00529614〉
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Souad Hadjoudja, Chantal Vignoles, Véronique Deluchat, Jean-François Lenain, Anne-Hélène Le Jeune, et al.. Short term copper toxicity on Microcystis aeruginosa and Chlorella vulgaris using flow cytometry.. Aquat Toxicol, 2009, 94 (4), pp.255-64. 〈10.1016/j.aquatox.2009.07.007〉. 〈hal-00653617〉
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Franck H. Gleason, Maiko Kagami, V. Marano Agostina, Télesphore Sime-Ngando. Fungal zoospores are valuable food resources in aquatic ecosystems. Supplement to Mycologia, 2009, 60 (5), pp.1-3. 〈hal-00527081〉
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Stéphane Pesce, Isabelle Batisson, Corinne Bardot, Céline Fajon, Christophe Portelli, et al.. Response of spring and summer riverine microbial communities following glyphosate exposure.. Ecotoxicology and Environmental Safety, Elsevier, 2009, 72 (7), pp.1905-12. 〈10.1016/j.ecoenv.2009.07.004〉. 〈hal-00528337〉
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Delphine Boucher, Didier Debroas. Impact of environmental factors on couplings between bacterial community composition and ectoenzymatic activities in a lacustrine ecosystem. FEMS Microbiology Ecology, Wiley-Blackwell, 2009, 70 (1), pp.66-78. 〈10.1111/j.1574-6941.2009.00730.x〉. 〈hal-00528210〉
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Jean-François Mangot, Cécile Lepère, Christophe Bouvier, Didier Debroas, Isabelle Domaizon. Community structure and dynamics of small eukaryotes targeted by new oligonucleotide probes: new insight into the lacustrine microbial food web. Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75 (19), pp.6373-81. 〈10.1128/AEM.00607-09〉. 〈hal-00528240〉
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Claire Valiente Moro, Olivier Crouzet, Séréna Rasconi, Antoine Thouvenot, Gérard Coffe, et al.. New design strategy for development of specific primer sets for PCR-based detection of Chlorophyceae and Bacillariophyceae in environmental samples.. Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75 (17), pp.5729-33. 〈10.1128/AEM.00509-09〉. 〈hal-00528341〉
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Laetitia Souppart, Giovanna Sanciu, Amandine Cian, Ivan Wawrzyniak, Frédéric Delbac, et al.. Molecular epidemiology of human Blastocystis isolates in France.. Parasitology Research / Journal of Parasitology, 2009, 105 (2), pp.413-21. 〈10.1007/s00436-009-1398-9〉. 〈hal-00527838〉
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Jacques H.C. Delabie, Régis Céréghino, Sarah Groc, Andrea Dejean, Marc Gibernau, et al.. Ants as biological indicators of Wayana Amerindian land use in French Guiana. Comptes Rendus Biologies, Elsevier Masson, 2009, 332 (7), pp.673-684. 〈10.1016/j.crvi.2009.01.006〉. 〈hal-01083754〉
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Jonathan E Urch, Ramon Hurtado-Guerrero, Damien Brosson, Zhanliang Liu, Vincent G H Eijsink, et al.. Structural and functional characterization of a putative polysaccharide deacetylase of the human parasite Encephalitozoon cuniculi.. Protein Science, Wiley, 2009, 18 (6), pp.1197-209. 〈10.1002/pro.128〉. 〈hal-00529768〉
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Sylvie Nélieu, François Perreau, Frédérique Bonnemoy, Martine Ollitrault, Didier Azam, et al.. Sunlight nitrate-induced photodegradation of chlorotoluron: evidence of the process in aquatic mesocosms.. Environmental Science & Technology, American Chemical Society, 2009, 43 (9), pp.3148-54. 〈hal-00528334〉
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Jean-François Brugère, Agnès Mihajlovski, Mohieddine Missaoui, Pierre Peyret. Tools for stools: the challenge of assessing human intestinal microbiota using molecular diagnostics. Expert Review of Molecular Diagnostics, Expert Reviews (formerly Future Drugs), 2009, 9 (4), pp.353-65. 〈10.1586/erm.09.16〉. 〈hal-00529610〉
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Anne Roué-Le Gall, Michel Poulin, Didier Debroas, Nicolas Flipo. A physical-microbial food web coupled model to study the evolution of the ecological functioning of a new reservoir after its flooding (Sep, Puy de Dôme). Ecological Modelling, Elsevier, 2009, 220 (6), pp.841-856. 〈10.1016/j.ecolmodel.2008.12.002〉. 〈hal-00528241〉
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Nicolas Blot, Xian-Jun Wu, Jean-Claude Thomas, Juan Zhang, Laurence Garczarek, et al.. Phycourobilin in trichromatic phycocyanin from oceanic cyanobacteria is formed post-translationally by a phycoerythrobilin lyase-isomerase.. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2009, 284 (14), pp.9290-8. 〈10.1074/jbc.M809784200〉. 〈hal-00529452〉
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Enora Briand, Nicolas Escoffier, Cécile Straub, Marion Sabart, Catherine Quiblier, et al.. Spatiotemporal changes in the genetic diversity of a bloom-forming Microcystis aeruginosa (cyanobacteria) population.. ISME Journal, Nature Publishing Group, 2009, 3 (4), pp.419-29. 〈10.1038/ismej.2008.121〉. 〈hal-00476872〉
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Serena Rasconi, Marlène Jobard, Lionel Jouve, Télesphore Sime-Ngando. Use of calcofluor white for detection, identification, and quantification of phytoplanktonic fungal parasites.. Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75 (8), pp.2545-53. 〈10.1128/AEM.02211-08〉. 〈hal-00527082〉
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Etienne Yergeau, Sung A Schoondermark-Stolk, Eoin L Brodie, Sébastien Déjean, Todd Z Desantis, et al.. Environmental microarray analyses of Antarctic soil microbial communities.. ISME Journal, Nature Publishing Group, 2009, 3 (3), pp.340-51. 〈10.1038/ismej.2008.111〉. 〈hal-00529762〉
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Télesphore Sime-Ngando, Jonathan Colombet. Virus and prophages in aquatic ecosystems. Canadian Journal of Microbiology, NRC Research Press, 2009, 55 (2), pp.95-109. 〈10.1139/w08-099〉. 〈hal-00529979〉
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Alexandra Ter Halle, Jaroslaw Wiszniowski, Adnane Hitmi, Gérard Ledoigt, Frédérique Bonnemoy, et al.. Photolysis of the herbicide sulcotrione: formation of a major photoproduct and its toxicity evaluation. Pesticide management science, 2009, 65, pp.14-18. 〈10.1002/ps.1637〉. 〈hal-00359523〉
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M.-E. Perga, Alexandre Bec, O. Anneville. Origins of carbon sustaining the growth of whitefish Coregonus lavaretus early larval stages in Lake Annecy: insights from fatty-acid biomarkers.. Journal of Fish Biology, Wiley, 2009, 74 (1), pp.2-17. 〈10.1111/j.1095-8649.2008.02105.x〉. 〈hal-00525275〉
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https://hal.archives-ouvertes.fr/hal-00525275/file/Origins_of_carbon_sustaining_the_growth_of_whitefish.pdf BibTex
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Anne-Catherine Lehours, Jean-François Carrias, Christian Amblard, Télesphore Sime-Ngando, Gérard Fonty. Les bactéries du lac Pavin. Pour la science, Pour la science, 2009, pp.xxx-xxx. 〈hal-00528566〉
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Alexandra Ter Halle, Jaroslaw Wiszniowski, Adnane Hitmi, Gérand Ledoigt, Frédérique Bonnemoy, et al.. Photolysis of the herbicide sulcotrione: formation of a major photoproduct and its toxicity evaluation.. Pest Management Science, Wiley, 2009, 65 (1), pp.14-8. 〈10.1002/ps.1637〉. 〈hal-00528119〉
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Mohieddine Missaoui, Cécile Militon, David Hill, Pierre Peyret. BLASTOG: a Parallel BLAST-Based Software for Functional Microarrays Probe Design Using the EGEE Computing Grid. GCA'09 – The 2009 International Conference on Grid Computing and Applications at Monte Carlo Resort, 2009, pp.126-132. 〈hal-00529601〉
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Olivier Crouzet, Isabelle Batisson, Pascale Besse-Hoggan, Frédérique Bonnemoy, C. Bardot, et al.. Response of soil microbial communities to the herbicide mesotrione: a dose-effect microcosm approach. Soil Biol. Biochem., 2009, pp.193-202. 〈hal-00444981〉
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J.H.C. Delabie, R. Céréghino, S. Groc, An. Déjean, M. Gibernau, et al.. Ants as biological indicators of Wayana Amerindians land use in French Guiana.. Comptes Rendus Biologies, Elsevier Masson, 2009, In press. 〈hal-00425989〉
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B. Corbara, J. M. Carpenter, R. Céréghino, M. Gibernau, M. Leponce, et al.. Diversity and nest site selection of social wasps along Guianese forest edges : assessing the influence of arboreal ants.. Comptes Rendus Biologies, Elsevier Masson, 2009, pp.In Press. 〈hal-00425829〉
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Aurélie Descroix, Christian Desvilettes, P. Martin, O. Anneville, Alexandre Bec, et al.. Feeding, growth and nutritional status of restocked salmon parr along the longitudinal gradient of a large European river: the Allier. Ecology of Fresh Water Fish, 2009, 18 (2), pp.282-296. 〈hal-00525872〉
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Hicham El Alaoui, D. Poincloux, Marie Diogon, M. Roussel, Catherine Texier, et al.. Des insectes à l'homme : la formidable réussite infectieuse des microsporidies. La santé de l'abeille, 2009, pp.xxx-xxx. 〈hal-00529799〉
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Jean-Pierre Morel, Nicolas Marmier, Charlotte Hurel, Nicole Morel-Desrosiers. Acid-base properties of the alumina surface: influence of the titration procedures on the microcalorimetric results. Journal of Colloid and Interface Science, Elsevier, 2009, 338, pp.10-15. 〈hal-00419633〉
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Ignacio González, Sébastien Déjean, P. G. P. Martin, Olivier Gonçalves, Philippe Besse, et al.. Highlighting relationships between heterogeneous biological data through graphical displays based on regularized canonical correlation analysis. Journal of Biological Systems, World Scientific Publishing, 2009, 17 (2), pp.173-199. 〈10.1142/S0218339009002831〉. 〈hal-00529973〉
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Diana Cuc, Sabine Bouguet-Bonnet, Nicole Morel-Desrosiers, Jean-Pierre Morel, Pierre Mutzenhardt, et al.. Location of a metallic cation complexed in a calixarene as determined by calixarene 13C spin relaxation. Application to cesium and thallium complexed by p-sulfonatocalix[4]arene in water. Journal of Physical Chemistry B, American Chemical Society, 2009, 113, pp.3499-3503. 〈hal-00419677〉
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Diana Cuc, Sabine Bouguet-Bonnet, Nicole Morel-Desrosiers, Jean-Pierre Morel, Pierre Mutzenhardt, et al.. Behavior of cesium and thallium cations inside a calixarene cavity as probed by nuclear spin relaxation. Evidence of cation-pi interactions in water. Journal of Physical Chemistry B, American Chemical Society, 2009, 113, pp.10800-10807. 〈hal-00419687〉
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Sarah Groc, Jérôme Orivel, Alain Dejean, Jean-Michel Martin, Marie-Pierre Etienne, et al.. Baseline study of the leaf-litter ant fauna in a French Guianese forest. Insect Conservation and Diversity, 2009, 2, pp.183-193. 〈10.1111/j.1752-4598.2009.00060.x 〉. 〈hal-01084030〉
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Eric Peyretaillade, Olivier Gonçalves, Sébastien Terrat, Eric Dugat-Bony, Patrick Wincker, et al.. Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation. BMC Genomics, BioMed Central, 2009, 10, pp.607. 〈10.1186/1471-2164-10-607〉. 〈hal-00461524〉
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Isabelle Batisson, Olivier Crouzet, Pascale Besse-Hoggan, Martine Sancelme, Jean-François Mangot, et al.. Isolation and characterization of mesotrione-degrading Bacillus sp. from soil. Environmental Pollution, Elsevier, 2009, pp.1195-1201. 〈hal-00365544〉
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Raghida Damaj, Sébastien Pomel, Geneviève Bricheux, Gérard Coffe, Bernard Viguès, et al.. Cross-study analysis of genomic data defines the ciliate multigenic epiplasmin family: strategies for functional analysis in Paramecium tetraurelia.. BMC Evolutionary Biology, BioMed Central, 2009, 9, pp.125. 〈10.1186/1471-2148-9-125〉. 〈hal-00526083〉
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Jannet Elloumi, Jean-François Carrias, Habib Ayadi, Télesphore Sime-Ngando, Abderrahmen Bouaïn. Communities structure of the planktonic halophiles in the solar saltern of Sfax, Tunisia. Estuarine, Coastal and Shelf Science, Elsevier, 2009, 81 (1), pp.19-26. 〈hal-00526256〉
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Anne-Catherine Lehours, Corinne Bardot, Pierre-François Pelisson, Annie Guedon, Stéphane Pesce, et al.. Successional changes in bacterial community assemblages following anoxia in the hypolimnion of a eutrophic lake. Aquatic Microbial Ecology, Inter Research, 2009, 54 (1), pp.71-82. 〈10.3354/ame01260〉. 〈hal-00528269〉
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J. R. Dolan, Behzad Mostajir, Télesphore Sime-Ngando. Rassoulzadegan in Villefranche-sur-Mer and the 'evolution' of marine microbial ecology over the last three decades. Aquatic Microbial Ecology, Inter Research, 2009, 57 (3), pp.221-225. 〈10.3354/ame01376〉. 〈hal-00528613〉
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Angia Sriram Pradeep Ram, Marion Sabart, D. Latour, Télesphore Sime-Ngando. Low effect of viruses on bacteria in deep anoxic water and sediment of a productive freshwater reservoir. Aquatic Microbial Ecology, Inter Research, 2009, 55 (3), pp.255-265. 〈hal-00527069〉
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Nicole Morel-Desrosiers. Aquatic chemistry. Chemistry World, Royal Society of Chemistry, 2009, 6 (8), pp.36. 〈hal-00526137〉
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Céline Leroy, Bruno Corbara, Alain Dejean, Régis Céréghino. Potential sources of nitrogen in an ant-garden tank-bromeliad. Plant Signaling and Behavior, Taylor & Francis, 2009, 4 (9), pp.868-870. 〈10.4161/psb.4.9.9423〉. 〈hal-01086786〉
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J. Jabiol, B. Corbara, A. Déjean, R. Céréghino. Structure of aquatic insect communities in tank-bromeliads in a East-Amazonian rainforest in French Guiana. Forest Ecology and Management, Elsevier, 2009, 257, pp.351-360. 〈hal-00350273〉
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Pierre-Yves Pascal, Dupuy Christine, Pierre Richard, Clarisse Mallet, Armynot Du Chatelet E., et al.. Seasonal variation in consumption of benthic bacteria by meio- and macrofauna in an intertidal mudflat. Limnology and Oceanography, Association for the Sciences of Limnology and Oceanography, 2009, pp.1048-1059. 〈hal-00525685〉
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Hélène Masclaux, Alexandre Bec, J. Martin Kainz, Christian Desvilettes, Lionel Jouve, et al.. Combined effects of food quality and temperature on somatic growth and reproduction of two freshwater cladocerans. Limnology and Oceanography, Association for the Sciences of Limnology and Oceanography, 2009, 54 (4), pp.1323-1332. 〈hal-00525522〉
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C. Leroy, B. Corbara, A. Déjean, R. Céréghino. Ants mediate foliar structure and nitrogen acquisition in a tank-bromeliad.. New Phytologist, Wiley, 2009, 183, pp.1124-1133. 〈hal-00480370〉
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Télesphore Sime-Ngando, Jonathan Colombet. Virus et prophages dans les écosystèmes aquatiques. Canadian Journal of Microbiology, NRC Research Press, 2009, 55 (2), pp.95-109. 〈hal-00527381〉
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Anne-Catherine Lehours, Isabelle Batisson, Annie Guedon, Gilles Mailhot, Gérard Fonty. Diversity of culturable bacteria, from the anaerobic zone of the meromictic lake pavin, able to perform dissimilatory-iron reduction in different in vitro conditions. Geomicrobiology Journal, Taylor & Francis, 2009, 26 (3), pp.212-223. 〈hal-00398644〉
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Benjamin Rotenberg, Jean-Pierre Morel, V. Marry, P. Turq, Nicole Morel-Desrosiers. On the driving force of cation exchange in clays: Insights from combined microcalorimetry experiments and molecular simulation. Geochimica et Cosmochimica Acta, Elsevier, 2009, 73, pp.4034. 〈10.1016/j.gca.2009.04.012〉. 〈hal-00391354〉
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Serena Rasconi, Marlène Jobard, Télesphore Sime-Ngando. Fungal parasitism of phytoplankton prokaryotes in the productive Lake Aydat (Massif Central, France). Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75, pp.8. 〈hal-00527118〉
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Sébastien Personnic, Isabelle Domaizon, Télesphore Sime-Ngando, Stéphan Jacquet. Seasonal variations of microbial abundances and virus- vs flagellate-induced mortality of picoplankton in three peri-alpine lakes. Journal of Plankton Research, Oxford University Press (OUP), 2009, 31 (10), pp.1161-1177. 〈hal-00527095〉
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Communication dans un congrès

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D. Debroas, Pierre Amato, A.M. Delort, Laurent Deguillaume, S. Raymond, et al.. Etude de l'activité et de la composition des communautés microbiennes dans l'eau non précipitante de la troposphere libre: approches moléculaires. Colloque national Microbiologie des Aérosols, MicrobAERO 2009, Oct 2009, Narbonne, France. 〈hal-00452051〉
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Maud Trotard, Cécile Lepère, Morgane Régeard, Claire Piquet-Pellorce, Dimitri Lavillette, et al.. Involvement of the phosphatidylinositol 4-kinases of type III at the entry and replication stages of the Hepatitis C Virus life cycle. The 34th European Symposium on Hormones and Cell Regulation, Sep 2009, Obernai, France. 〈hal-00676589〉
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Olivier Crouzet, Pascale Besse-Hoggan, Isabelle Batisson, Frédérique Bonnemoy, Jacques Bohatier, et al.. Responses of soil microorganisms to the herbicide mesotrione in microcosm experiments: from whole microbial communities to functional groups. Conference on Pesticide Behaviour in Soils, Water and Air, Sep 2009, York, United Kingdom. 〈hal-00422661〉
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Stéphanie Durand, Olivier Crouzet, Isabelle Batisson, Martine Sancelme, Clarisse Mallet, et al.. Characterization of the mesotrione biodegradation pathway by Bacillus strains - Comparison of soil slurries and batch experiments. Conference on Pesticide Behaviour in Soils, Water and Air, Sep 2009, York, United Kingdom. 〈hal-00422901〉
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Bruno Combourieu, C. Valiente Moro, Isabelle Batisson, D. Latour, Martine Sancelme, et al.. Impact of pesticides on microorganisms: what are the limits of the metabolomic approach ?. SETAC Europe, 18th Annual Meeting, May 2009, Goteborg, Sweden. 〈hal-00387950〉
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Isabelle Batisson, Olivier Crouzet, Pascale Besse-Hoggan, Martine Sancelme, Jean-François Mangot, et al.. Isolation and characterization of mesotrione-degrading bacteria from a French agricultural soil. SETAC Europe, 18th Annual Meeting, May 2009, Goteborg, Sweden. 〈hal-00387966〉
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Olivier Crouzet, Isabelle Batisson, Pascale Besse-Hoggan, Jacques Bohatier, Clarisse Mallet. Réponse des communautés microbiennes du sol aux herbicides : exemple de la mésotrione dans une étude dose-effet en microcosme. XXXIX Congrès du Groupe Français des Pesticides, May 2009, Toulouse, France. 〈hal-00387593〉
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C. Valiente Moro, D. Latour, Jacques Bohatier, Bruno Combourieu. Impact de deux herbicides sur le métabolisme et la physiologie de la cyanobactérie toxique Microcystis aeruginosa. XXXIX Congrès du Groupe Français des Pesticides, May 2009, Toulouse, France. 〈hal-00387864〉
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Chapitre d'ouvrage

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Jean-François Carrias, Télesphore Sime-Ngando. Bacteria, Attached to Surfaces. Encyclopedia of Inland Waters, Elsevier, pp.182-192, 2009, 〈10.1016/B978-012370626-3.00125-3〉. 〈hal-00528775〉
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Christian Desvilettes, Alexandre Bec. Formation and Transfer of Fatty Acids in Aquatic Microbial Food Webs: Role of Heterotrophic Protists. Formation and Transfer of Fatty Acids in Aquatic Microbial Food Webs: Role of Heterotrophic Protists, Springer, pp.25-42, 2009. 〈hal-00525519〉
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Autre publication

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Isabelle Batisson, Jacques Bohatier, Jean-Louis Bonnet, Frédérique Bonnemoy, Pascale Besse-Hoggan, et al.. Les xénobiotiques : devenir et impact dans l'environnement. Chapitre de la Revue d'Auvergne "L'environnement : un pôle de compétences en Auvergne", Volume .. 2009, pp.39-54. 〈hal-00450060〉
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Poster

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Sylvie Nelieu, Francois Perreau, Frédérique Bonnemoy, Jacques Bohatier, Didier Azam, et al.. Sunlight nitrate-induced photodegradation of chlorotoluron: evidence of the process in aquatic mesocosms. Symposium on Toxicity Assessment ISTA 14, Aug 2009, Metz, France. 2009. 〈hal-01203987〉
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Rapport

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Christophe Gouinaud, David Hill, Pierre Peyret, Loïc Yon. Finding spot shape in cdna microarray by using a deformable grid and a Markov segmentation. 2009. 〈hal-00678560〉
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Thèse

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Aurélie Descroix. Croissance et régime alimentaire des juvéniles de Saumon atlantique (Salmo salar L.) dans la rivière Allier. Biodiversité et Ecologie. Université Blaise Pascal - Clermont-Ferrand II, 2009. Français. 〈NNT : 2009CLF21950〉. 〈tel-00725306〉
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