Publications HAL du labo/EPI 1006225

2025

Journal articles

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Fabrice Sircoulomb, Eric Dubois, Frank Schurr, Pierrick Lucas, Marina Meixner, et al.. Genotype B of deformed wing virus and related recombinant viruses become dominant in European honey bee colonies. Scientific Reports, 2025, 15, ⟨10.1038/s41598-025-86937-5⟩. ⟨anses-04969098⟩
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Steven van Borm, Ann Kathrin Ahrens, Claudia Bachofen, Ashley Banyard, Cathrine Arnason Bøe, et al.. Genesis and Spread of Novel Highly Pathogenic Avian Influenza A(H5N1) Clade 2.3.4.4b Virus Genotype EA-2023-DG Reassortant, Western Europe. Emerging Infectious Diseases, 2025, 31 (6), ⟨10.3201/eid3106.241870⟩. ⟨anses-05058904⟩
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Martin Pariès, Stéphanie Bougeard, Aida Eslami, Zhonglin Li, Michel Laviolette, et al.. The clinical value and most informative threshold of polygenic risk score in the Quebec City Case-Control Asthma Cohort. BMC Pulmonary Medicine, 2025, 25 (1), pp.21. ⟨10.1186/s12890-025-03486-3⟩. ⟨anses-04982026⟩
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Géraldine Cazeau, Briac Virey, Carole Sala, Renaud Lailler, Adeline Huneau-Salaün, et al.. Is a syndromic approach well suited to foodborne disease surveillance? Implication for salmonellosis surveillance and prevention in France from a “One Health” perspective. Preventive Veterinary Medicine, 2025, 236, pp.106422. ⟨10.1016/j.prevetmed.2025.106422⟩. ⟨anses-04926121⟩
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Gautier Richard, Séverine Hervé, Amélie Chastagner, Stéphane Quéguiner, Véronique Beven, et al.. Major change in swine influenza virus diversity in France owing to emergence and widespread dissemination of a newly introduced H1N2 1C genotype in 2020. Virus Evolution, In press, 11 (1), ⟨10.1093/ve/veae112⟩. ⟨anses-04941050⟩
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Francois-Xavier Briand, Loïc Palumbo, Claire Martenot, Pascale Massin, Martine Cherbonnel, et al.. Highly Pathogenic Clade 2.3.4.4b H5N1 Influenza Virus in Seabirds in France, 2022–2023. Transboundary and emerging diseases, 2025, 2025 (1), ⟨10.1155/tbed/8895883⟩. ⟨anses-04986637⟩
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Janaïna Grevelinger, Olivier Bourry, Selma Schmidt, François Meurens, Céline Deblanc, et al.. Swine influenza A virus infection sets the local immunological landscape in subsequent infection with porcine reproductive and respiratory syndrome virus. Veterinary Research, 2025, 56 (1), pp.114. ⟨10.1186/s13567-025-01536-6⟩. ⟨hal-05103379⟩
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Charlène Martin, Claudie Eber, Léa Santerre, Dorine Martres, Florine Santier, et al.. A new adventure: the Youth section comes to Life!. Virologie, 2025, 29 (1), pp.5-6. ⟨10.1684/vir.2025.1072⟩. ⟨anses-05010219⟩
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Noémie Vingadassalon, Déborah Merda, Arnaud Felten, Virginie Chesnais, Christos Kourtis, et al.. Epidemiology of Staphylococcus aureus food isolates: Comparison of conventional methods with whole genome sequencing typing methods. Food Microbiology, 2025, 125, pp.104625. ⟨10.1016/j.fm.2024.104625⟩. ⟨anses-04694068⟩
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Marline M. Faulhaber, Florence Tardy, Franziska Saul, Elisabeth Müller, Michael Pees, et al.. Detection of Mycoplasma spp. from snakes from five different families. BMC Veterinary Research, 2025, 21 (1), pp.38. ⟨10.1186/s12917-025-04487-4⟩. ⟨anses-04960180⟩
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David Bass, Sandrine Baron, Marie-Agnes Travers, Matt Longshaw, Olga Haenen. One Health in Fish and Shellfish. Bulletin of the European Association of Fish Pathologists, 2025, 45 (1), pp.124752. ⟨10.48045/001c.124752⟩. ⟨hal-04943320⟩
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Laurent Bigarré. Changement climatique : quel impact sur les maladies virales des poissons ?. The Conversation France, 2025. ⟨anses-05093671⟩
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Francois-Xavier Briand, Loïc Palumbo, Claire Martenot, Pascale Massin, Martine Cherbonnel, et al.. Highly Pathogenic Clade 2.3.4.4b H5N1 Influenza Virus in Seabirds in France, 2022–2023. Transboundary and emerging diseases, 2025, 2025 (1), ⟨10.1155/tbed/8895883⟩. ⟨hal-05023527⟩
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Frédérique Mocz, Jean-Philippe Moysan, Laura Warin, Alassane Keita, Virginie Michel, et al.. Positive impacts of a covered veranda on broiler chicken welfare. Poultry Science, In press, pp.105347. ⟨10.1016/j.psj.2025.105347⟩. ⟨anses-05097465⟩
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Martine Denis, Arnaud Felten, Linda Ducret, Emmanuelle Houard, Manon Tasset, et al.. Pathogenic Yersinia enterocolitica’s Contamination of Cheeks, Tongues, and Other Pork Meats at Retail in France, 2023. Advances in Applied Microbiology, 2025, 5 (1), pp.15. ⟨10.3390/applmicrobiol5010015⟩. ⟨hal-04926579⟩
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Cecilie Thystrup, Maja Lykke Brinch, Clementine Henri, Lapo Mughini-Gras, Eelco Franz, et al.. Source attribution of human Campylobacter infection: a multi-country model in the European Union. Frontiers in Microbiology, 2025, 16, ⟨10.3389/fmicb.2025.1519189⟩. ⟨hal-04933961⟩
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Ásgeir Ástvaldsson, Gunnar Andersson, Linda Svensson, Karin Bruckner, Martine Denis, et al.. Evaluation of methods for detection of Campylobacter in raw milk: A multi-country study. International Journal of Food Microbiology, 2025, 427, pp.110938. ⟨10.1016/j.ijfoodmicro.2024.110938⟩. ⟨hal-05041994⟩
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Jean Artois, Timothée Vergne, Lisa Fourtune, Simon Dellicour, Axelle Scoizec, et al.. Spatial risk modelling of highly pathogenic avian influenza in France: Fattening duck farm activity matters. PLoS ONE, 2025, 20 (2), pp.e0316248. ⟨10.1371/journal.pone.0316248⟩. ⟨anses-04960000⟩
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Carine Peytavin de Garam, Franck Boué, Jenny Knapp, Yannick Blanchard, Gérald Umhang. Study of genetic diversity of Echinococcus granulosus sensu stricto in France based on full cox1 gene. Infection, Genetics and Evolution, 2025, 131, pp.105757. ⟨10.1016/j.meegid.2025.105757⟩. ⟨hal-05067539⟩
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Noémie Gloanec, Muriel Guyard-Nicodème, Marianne Chemaly, Daniel Dory. Reverse vaccinology: A strategy also used for identifying potential vaccine antigens in poultry. Vaccine, 2025, 48, pp.126756. ⟨10.1016/j.vaccine.2025.126756⟩. ⟨anses-04933934⟩
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Rozenn Souillard, Morgane Salines, Claire Martenot, Caroline Le Maréchal, Laetitia Bonifait, et al.. Burying poultry carcasses on farms as a disposal option in crisis situations: learnings and perspectives from a field study during an avian influenza epizootic in France. Poultry Science, 2025, 104 (2), pp.104806. ⟨10.1016/j.psj.2025.104806⟩. ⟨anses-05000752⟩
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Gwenola Picard, Agathe Mas, Maria Pardos de la Gandara, Marie Mesgouez, Laetitia Bonifait, et al.. Cas groupés de Salmonella Typhimurium au sein de trois écoles élémentaires et maternelles en région Pays de la Loire, France, mars-avril 2024. Bulletin épidémiologie hebdomadaire, 2025, 5, pp.64-70. ⟨anses-05009859⟩
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Léna Barre, Florence Guillier, Bertrand Lombard, Corinne Danan, Jacques-Antoine Hennekinne, et al.. Interlaboratory proficiency tests to assess the analytical competency of French official control laboratories for the analysis of Listeria monocytogenes, Salmonella spp. and coagulase-positive staphylococci in food. International Journal of Food Microbiology, 2025, 438, pp.111218. ⟨10.1016/j.ijfoodmicro.2025.111218⟩. ⟨anses-05070920⟩
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Ásgeir Ástvaldsson, Gunnar Andersson, Linda Svensson, Karin Bruckner, Martine Denis, et al.. Evaluation of methods for detection of Campylobacter in raw milk: A multi-country study. International Journal of Food Microbiology, 2025, 427, pp.110938. ⟨10.1016/j.ijfoodmicro.2024.110938⟩. ⟨anses-04792848⟩
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Laetitia Montacq, Marine Baud, Hélène Giummarra, Doriana Flores, Laurane Pallandre, et al.. Carp edema virus surveillance in the koi trade: early detection through shipping environment sampling and longitudinal monitoring of CEV outbreaks in a wholesaler facility. Veterinary Research, 2025, 56 (1), pp.48. ⟨10.1186/s13567-025-01476-1⟩. ⟨hal-04977829⟩
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Hella Schwegler, Laurent Bigarré, Karoline Lipnik, Nora Dinhopl, Astrid Holzer, et al.. First report of ictavirus acipenseridallo2 (AciHV-2) in Danube sturgeons Acipenser gueldenstaedtii in Austria. Diseases of Aquatic Organisms, 2025, 161, pp.47-53. ⟨10.3354/dao03837⟩. ⟨anses-04989831⟩
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Neil Wilkins, Matteo Crotta, Pachka Hammami, Ilaria Di Bartolo, Stefan Widgren, et al.. A farm‐to‐consumption quantitative microbiological risk assessment for hepatitis E in pigs. Risk Analysis, In press, ⟨10.1111/risa.70035⟩. ⟨anses-05081613⟩
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Delsart Maxime, Fablet Christelle. L’élevage de porcs plein air : impacts sur le bien-être animal, la santé animale et la sécurité sanitaire. Bulletin des G.T.V., 2025, 118. ⟨hal-05068936⟩
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Arnaud Lebret, Patricia Renson, Mathieu Brissonnier, Céline Chevance, Valérie Normand, et al.. PRRSV-1 outbreak in a farrowing farm caused by a vaccine derived strain: a case report. Porcine health management, 2025, 11 (1), pp.9. ⟨10.1186/s40813-025-00425-w⟩. ⟨anses-05000877⟩
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Cecilie Thystrup, Maja Lykke Brinch, Clementine Henri, Lapo Mughini-Gras, Eelco Franz, et al.. Source attribution of human Campylobacter infection: a multi-country model in the European Union. Frontiers in Microbiology, 2025, 16, ⟨10.3389/fmicb.2025.1519189⟩. ⟨hal-05042005⟩
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Conference papers

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Maxime Delsart, Jean-Michel Répérant, Chantal Benoit, Edouard Boudin, Jean-François Da-Costa, et al.. Coprologie ou sérologie : quel est le test de diagnostic le plus approprié pour définir le statut d'une exploitation vis-à-vis d'Ascaris suum ?. Congrès de l’AEEMA, May 2025, Maisons-Alfort, France. ⟨hal-05089431⟩
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Karim Adjou, A Chevillot, Yannick Blanchard, Pierrick Lucas, Houria Louifi, et al.. First identification of Cryptosporidium parvum virus 1 (CSpV1) in various subtypes of Cryptosporidium parvum from humans and diarrheic calves, lambs and goat kids in France. 8th International Giardia and Cryptosporidium Congress (8th IGCC 2025), Melbourne University, Feb 2025, Melbourne, Australia. ⟨hal-04998205⟩
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Caroline Hervet, Aline Perrin, Patricia Renson, Céline Deblanc, Marta Muñoz, et al.. Comparative impact of porcine reproductive and respiratory virus and swine influenza A virus infections on respiratory lymph nodes B cells and macrophages. Congrès du Club d'Immunologie et de Vaccinologie Vétérinaire (CIVVET), Club d'Immunologie et de Vaccinologie Vétérinaire (CIVVET); Oniris; INRAE, Apr 2025, Nantes, France. ⟨hal-05107977⟩
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Poster communications

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Maxime Delsart, Jean-Michel Répérant, Chantal Benoit, Edouard Boudin, Jean-François Da-Costa, et al.. Coprology or serology: which is the most appropriate diagnostic test for defining the status of a farm regarding A. suum?. 16th European symposium of porcine health management, May 2025, Bern Switzerland, France. ⟨hal-05089406⟩
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2024

Journal articles

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Laetitia Montacq, Doriana Flores, Hélène Giummarra, Laurane Pallandre, Anaïs Angot, et al.. cds46, a highly variable carp edema virus gene. Journal of General Virology, 2024, 105 (11), 16 p.; 002048. ⟨10.1099/jgv.0.002048⟩. ⟨hal-04794299⟩
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Kathrin Schmies, Christin Hennig, Nicolas Rose, Christelle Fablet, Timm Harder, et al.. Dynamic of swine influenza virus infection in weaned piglets in five enzootically infected herds in Germany, a cohort study. Porcine health management, 2024, 10 (1), pp.36. ⟨10.1186/s40813-024-00390-w⟩. ⟨anses-04805846⟩
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Stéphane Gorin, Gautier Richard, Séverine Hervé, Eric Eveno, Yannick Blanchard, et al.. Characterization of Influenza D Virus Reassortant Strain in Swine from Mixed Pig and Beef Farm, France. Emerging Infectious Diseases, 2024, 30 (8), pp.1672-1676. ⟨10.3201/eid3008.240089⟩. ⟨anses-04790659⟩
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Vianney Sicard, Sébastien Picault, Mathieu Andraud. Pig herd management and infection transmission dynamics: a challenge for modellers. Peer Community Journal, 2024, 4, pp.e52. ⟨10.24072/pci.animsci.100198⟩. ⟨hal-04592902⟩
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Alice Fusaro, Bianca Zecchin, Edoardo Giussani, Elisa Palumbo, Montserrat Agüero-García, et al.. High pathogenic avian influenza A(H5) viruses of clade 2.3.4.4b in Europe—Why trends of virus evolution are more difficult to predict. Virus Evolution, 2024, 10 (1), pp.veae027. ⟨10.1093/ve/veae027⟩. ⟨anses-04582927⟩
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Mathilde Gondard, Lydie Postic, Emmanuel Garin, Mathilde Turpaud, Fabien Vorimore, et al.. Exceptional Bluetongue virus (BTV) and Epizootic hemorrhagic disease virus (EHDV) circulation in France in 2023. Virus Research, 2024, 350, pp.199489. ⟨10.1016/j.virusres.2024.199489⟩. ⟨anses-04793042⟩
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Patrick Munk, Dongsheng Yang, Timo Röder, Leonie Maier, Thomas Nordahl Petersen, et al.. The European livestock resistome. mSystems, 2024, 9 (4), ⟨10.1128/msystems.01328-23⟩. ⟨hal-04879771⟩
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Benedetta Cordioli, Alessia Rizzardi, Angela Guolo, Tiziana Ferro, Cosetta Bacchin, et al.. Antimicrobial susceptibility of Clostridium botulinum group III field strains isolated in Europe from animal outbreaks. Veterinary Microbiology, 2024, 298, pp.110281. ⟨10.1016/j.vetmic.2024.110281⟩. ⟨anses-04792932⟩
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Karolina Ucieklak, Sylwia Wojtys-Tekiel, Garance Leroy, Laëtitia Le Devendec, Sandrine Baron, et al.. New Structure of Aeromonas salmonicida O-Polysaccharide Isolated from Ill Farmed Fish. Microorganisms, 2024, 12 (8), pp.1575. ⟨10.3390/microorganisms12081575⟩. ⟨anses-04693995⟩
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Pauline Pannetier, Christelle Clérandeau, Stéphane Le Floch, Jérôme Cachot, Bénédicte Morin. Toxicity evaluation of water-accommodated fraction of heavy and light oils on the rainbow trout fish cell line RTL-W1.. Environmental Science and Pollution Research, 2024, 31 (37), pp.49715-49726. ⟨10.1007/s11356-024-34458-5⟩. ⟨hal-04675367⟩
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Janaïna Grevelinger, Olivier Bourry, François Meurens, Aline Perrin, Caroline Hervet, et al.. Impact of swine influenza A virus on porcine reproductive and respiratory syndrome virus infection in alveolar macrophages. Frontiers in Veterinary Science, 2024, 11, pp.1454762. ⟨10.3389/fvets.2024.1454762⟩. ⟨hal-04696357⟩
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Konstantinos Koutsoumanis, Ana Allende, Declan Bolton, Sara Bover-Cid, Marianne Chemaly, et al.. BSE risk posed by ruminant collagen and gelatine derived from bones. EFSA Journal, 2024, 22 (7), ⟨10.2903/j.efsa.2024.8883⟩. ⟨hal-04765992⟩
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Manuel Garrido-Romero, Florencio Pazos, Elisa Sánchez-Martínez, Carlos Benito, José Ángel Gómez-Ruiz, et al.. Relevance of gut microbiome research in food safety assessment. Gut microbes, 2024, 16 (1), pp.2410476. ⟨10.1080/19490976.2024.2410476⟩. ⟨anses-04792666⟩
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Jean Lagarde, Carole Feurer, Martine Denis, Pierre-Emmanuel Douarre, Pascal Piveteau, et al.. Listeria monocytogenes prevalence and genomic diversity along the pig and pork production chain. Food Microbiology, 2024, 119, pp.104430. ⟨10.1016/j.fm.2023.104430⟩. ⟨hal-04526173⟩
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Caroline Le Maréchal, Martine Denis, Louis Vanlemmens, Léa Jambou, Gauthier Delvallez, et al.. An outbreak of botulism on a pig farm due to the newly described Clostridium botulinum type C. Anaerobe, 2024, 89, pp.102885. ⟨10.1016/j.anaerobe.2024.102885⟩. ⟨anses-04922694⟩
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Greta Bellinzona, Tiago Nardi, Michele Castelli, Gherard Batisti Biffignandi, Karim Adjou, et al.. Comparative genomics of Cryptosporidium parvum reveals the emergence of an outbreak-associated population in Europe and its spread to the United States. Genome Research, 2024, 34 (6), pp.877-887. ⟨10.1101/gr.278830.123⟩. ⟨hal-04643965⟩
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Céline Deblanc, Stéphane Quéguiner, Stéphane Gorin, Gautier Richard, Angélique Moro, et al.. Pathogenicity and escape to pre-existing immunity of a new genotype of swine influenza H1N2 virus that emerged in France in 2020. Veterinary Research, 2024, 55 (1), pp.65. ⟨10.1186/s13567-024-01319-5⟩. ⟨hal-04588373⟩
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Alexandre Gaymard, Caroline Picard, Guilhem Vazzoler, Pascale Massin, Emilie Frobert, et al.. Impact of the H274Y Substitution on N1, N4, N5, and N8 Neuraminidase Enzymatic Properties and Expression in Reverse Genetic Influenza A Viruses. Viruses, 2024, 16 (3), pp.388. ⟨10.3390/v16030388⟩. ⟨anses-04549222⟩
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Patricia Renson, Sophie Mahé, Mathieu Andraud, Mireille Le Dimna, Frédéric Paboeuf, et al.. Effect of vaccination route (intradermal vs. intramuscular) against porcine reproductive and respiratory syndrome using a modified live vaccine on systemic and mucosal immune response and virus transmission in pigs. BMC Veterinary Research, 2024, 20 (1), pp.5. ⟨10.1186/s12917-023-03853-4⟩. ⟨anses-04413214⟩
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Manon Dechêne-Tempier, Claire de Boisséson, Pierrick Lucas, Stéphanie Bougeard, Virginie Libante, et al.. Virulence genes, resistome and mobilome of Streptococcus suis strains isolated in France. Microbial Genomics, 2024, 10 (3), pp.001224. ⟨10.1099/mgen.0.001224⟩. ⟨hal-04528772⟩
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Pauline Pannetier, Bénédicte Morin, Joëlle Cabon, Morgane Danion, Thierry Morin, et al.. Water-accommodated fractions of heavy and light oils impact DNA integrity, embryonic development, and immune system of Japanese medaka at early life stages. Environmental Science and Pollution Research, 2024, 31 (38), pp.50916-50928. ⟨10.1007/s11356-024-34604-z⟩. ⟨anses-04913812⟩
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Asma Mesdour, Sandra Ijoma, Muhammad-Bashir Bolajoko, Elena Arsevska, Mamadou Ciss, et al.. Assessing the impact of structural modifications in the construction of surveillance network for Peste des petits ruminants disease in Nigeria: The role of backbone and sentinel nodes. PLoS ONE, 2024, 19 (11), pp.e0303237. ⟨10.1371/journal.pone.0303237⟩. ⟨hal-04893378⟩
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