Publications HAL du labo/EPI 1006225

2023

Journal articles

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Anne-Marie Pourcher, Céline Druilhe, Caroline Le Maréchal, Elisabeth Repérant, Evelyne Boscher, et al.. Quantification of indicator and pathogenic bacteria in manures and digestates from three agricultural biogas plants over a one-year period. Waste Management, 2023, 169, pp.91-100. ⟨10.1016/j.wasman.2023.06.037⟩. ⟨anses-04170587⟩
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Mathieu Andraud, S Hervé, S Gorin, N Barbier, S Quéguiner, et al.. Evaluation of early single dose vaccination on swine influenza A virus transmission in piglets: From experimental data to mechanistic modelling. Vaccine, 2023, 41, pp.3119 - 3127. ⟨10.1016/j.vaccine.2023.04.018⟩. ⟨anses-04123704⟩
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Stephen Valas, David Ngwa-Mbot, Sophie Stourm, Sophie Mémeteau, Marc Tabouret. A retrospective evaluation of pooled serum ELISA testing in the frame of the French eradication program for infectious bovine rhinotracheitis. Preventive Veterinary Medicine, 2023, 214, pp.105890. ⟨10.1016/j.prevetmed.2023.105890⟩. ⟨anses-04188380⟩
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Martine Denis, Valérie Rose, Bérengère Nagard, Amandine Thépault, Pierrick Lucas, et al.. Comparative Analysis of Campylobacter jejuni and C. coli Isolated from Livestock Animals to C. jejuni and C. coli Isolated from Surface Water Using DNA Sequencing and MALDI-TOF. Pathogens, 2023, 12 (9), pp.1069. ⟨10.3390/pathogens12091069⟩. ⟨hal-04196825⟩
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Brandon H. Hayes, Timothée Vergne, Mathieu Andraud, Nicolas Rose. Mathematical modeling at the livestock-wildlife interface: scoping review of drivers of disease transmission between species. Frontiers in Veterinary Science, 2023, 10, pp.1225446. ⟨10.3389/fvets.2023.1225446⟩. ⟨hal-04223851⟩
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Héloïse Pageaut, Sonia Lacouture, Mélanie Lehoux, Corinne Marois-Créhan, Mariela Segura, et al.. Interactions of Mycoplasma hyopneumoniae and/or Mycoplasma hyorhinis with Streptococcus suis Serotype 2 Using In Vitro Co-Infection Models with Swine Cells. Pathogens, 2023, 12 (7), pp.866. ⟨10.3390/pathogens12070866⟩. ⟨anses-04188331⟩
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https://anses.hal.science/anses-04188331/file/pathogens-12-00866-v2.pdf BibTex
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François Meurens, Frédéric Carlin, Michel Federighi, Maria-Eleni Filippitzi, Matthieu Fournier, et al.. Clostridium botulinum type C, D, C/D, and D/C: An update. Frontiers in Microbiology, 2023, 13, pp.1099184. ⟨10.3389/fmicb.2022.1099184⟩. ⟨hal-03963259⟩
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https://hal.inrae.fr/hal-03963259/file/Meurens_Front%20Microbiol_2023.pdf BibTex
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Maud Contrant, Lionel Bigault, Mathieu Andraud, Marion Desdouits, Sophie Rocq, et al.. Porcine Epidemic Diarrhea Virus, Surrogate for Coronavirus Decay Measurement in French Coastal Waters and Contribution to Coronavirus Risk Evaluation. Microbiology Spectrum, 2023, 11 (4), pp.e0184423. ⟨10.1128/spectrum.01844-23⟩. ⟨anses-04191018⟩
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Emma Meloni, Caroline Le Maréchal, Florian Millot, Ariane Payne, Clément Calenge, et al.. Exposure of waterfowl to Clostridium botulinum in France. Frontiers in Conservation Science, 2023, 4, pp.1011555. ⟨10.3389/fcosc.2023.1011555⟩. ⟨anses-04050397⟩
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Noémie Gloanec, Muriel Guyard-Nicodème, Raphaël Brunetti, Ségolène Quesne, Alassane Keita, et al.. Plasmid DNA Prime/Protein Boost Vaccination against Campylobacter jejuni in Broilers: Impact of Vaccine Candidates on Immune Responses and Gut Microbiota. Pharmaceutics, 2023, 15 (5), pp.1397. ⟨10.3390/pharmaceutics15051397⟩. ⟨anses-04123731⟩
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Cyrielle Payen, Annaëlle Kerouanton, Jorge Novoa, Florencio Pazos, Carlos Benito, et al.. Effects of Major Families of Modulators on Performances and Gastrointestinal Microbiota of Poultry, Pigs and Ruminants: A Systematic Approach. Microorganisms, 2023, 11 (6), pp.1464. ⟨10.3390/microorganisms11061464⟩. ⟨anses-04170451⟩
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Jeanne Laurentie, Valentin Loux, Christelle Hennequet-Antier, Emilie Chambellon, Julien Deschamps, et al.. Comparative Genome Analysis of Enterococcus cecorum Reveals Intercontinental Spread of a Lineage of Clinical Poultry Isolates. MSphere, 2023, 8 (2), pp.e0049522. ⟨10.1128/msphere.00495-22⟩. ⟨hal-04004063⟩
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Cyrille Ngassam Tchamba, Fabrice Touzain, Marte Fergestad, Anneleen de Visscher, Trine l'Abee-Lund, et al.. Identification of staphylococcal cassette chromosome mec in Staphylococcus aureus and non-aureus staphylococci from dairy cattle in Belgium: Comparison of multiplex PCR and whole genome sequencing. Research in Veterinary Science, 2023, 155, pp.150-155. ⟨10.1016/j.rvsc.2023.01.011⟩. ⟨anses-04041119⟩
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Solène Mousqué, Frédérique Mocz, Anja Riber. Validation of Methods for Assessment of Dust Levels in Layer Barns. Animals, 2023, 13 (5), pp.783. ⟨10.3390/ani13050783⟩. ⟨anses-04040543⟩
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Jun-Sik Lim, Mathieu Andraud, Eutteum Kim, Timothée Vergne. Three Years of African Swine Fever in South Korea (2019–2021): A Scoping Review of Epidemiological Understanding. Transboundary and emerging diseases, 2023, 2023, pp.4686980. ⟨10.1155/2023/4686980⟩. ⟨hal-04055541⟩
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Nagham Anis, Laetitia Bonifait, Ségolène Quesne, Louise Baugé, Marianne Chemaly, et al.. Simultaneous Detection of Salmonella spp. and Quantification of Campylobacter spp. in a Real-Time Duplex PCR: Myth or Reality?. Pathogens, 2023, 12, pp.338. ⟨10.3390/pathogens12020338⟩. ⟨anses-04018970⟩
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Minh Huyen Ton Nu Nguyet, Stéphanie Bougeard, Aurélie Babin, Eric Dubois, Christine Druesne, et al.. Building composite indices in the age of big data – Application to honey bee exposure to infectious and parasitic agents. Heliyon, 2023, 9 (4), pp.e15244. ⟨10.1016/j.heliyon.2023.e15244⟩. ⟨anses-04068240⟩
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Florent Kempf, Guido Cordoni, Anne-Marie Chaussé, Rosanna Drumo, Helen Brown, et al.. Inflammatory Responses Induced by the Monophasic Variant of Salmonella Typhimurium in Pigs Play a Role in the High Shedder Phenotype and Fecal Microbiota Composition. mSystems, 2023, 8 (1), pp.e0085222. ⟨10.1128/msystems.00852-22⟩. ⟨hal-03947262⟩
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https://hal.inrae.fr/hal-03947262/file/2023_Kempf_msphere_vol-8.pdf BibTex
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Noémie Gloanec, Daniel Dory, Ségolène Quesne, Véronique Béven, Typhaine Poezevara, et al.. Research Note: Analysis of immune responses in broilers after vaccination against Campylobacter jejuni. Poultry Science, 2023, 102 (4), pp.102510. ⟨10.1016/j.psj.2023.102510⟩. ⟨anses-04040798⟩
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Olivier Barraud, Lucie Laval, Laëtitia Le Devendec, Emeline Larvor, Claire Chauvin, et al.. Integrons from Aeromonas isolates collected from fish: A global indicator of antimicrobial resistance and anthropic pollution. Aquaculture, 2023, 576, pp.739768. ⟨10.1016/j.aquaculture.2023.739768⟩. ⟨hal-04179327⟩
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Madeleine de Sousa Violante, Valérie Michel, Karol Romero, Laetitia Bonifait, Louise Baugé, et al.. Tell me if you prefer bovine or poultry sectors and I’ll tell you who you are: Characterization of Salmonella enterica subsp. enterica serovar Mbandaka in France. Frontiers in Microbiology, 2023, 14, pp.1130891. ⟨10.3389/fmicb.2023.1130891⟩. ⟨anses-04105476⟩
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Doriana Flores, Marine Baud, Laurane Pallandre, Armand Lautraite, Rodolphe Thomas, et al.. Premiers foyers de la maladie du sommeil de la carpe dans le Tarn. Bulletin épidémiologique, 2023, 98 (article 11), pp.1-4. ⟨anses-04188488⟩
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Julia Mougin, Victor Lobanov, Morgane Danion, Roxane Roquigny, Lionel Goardon, et al.. Effects of dietary co-exposure to fungal and herbal functional feed additives on immune parameters and microbial intestinal diversity in rainbow trout (Oncorhynchus mykiss). Fish and Shellfish Immunology, 2023, 137, pp.108773. ⟨10.1016/j.fsi.2023.108773⟩. ⟨hal-04081993⟩
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Karim Tarik Adjou, Aurélie Chevillot, Pierrick Lucas, Yannick Blanchard, Houria Louifi, et al.. First identification of Cryptosporidium parvum virus 1 (CSpV1) in various subtypes of Cryptosporidium parvum from diarrheic calves, lambs and goat kids from France. Veterinary Research, 2023, 54 (1), pp.66. ⟨10.1186/s13567-023-01196-4⟩. ⟨anses-04185936⟩
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https://anses.hal.science/anses-04185936/file/Adjou_Veterinary%20Research_2023.pdf BibTex
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Peter Smith, Luana Cortinovis, Tobia Pretto, Amedeo Manfrin, Daniela Florio, et al.. Setting epidemiological cut-off values for Vibrio harveyi relevant to MIC data generated by a standardised microdilution method. Diseases of Aquatic Organisms, 2023, 155, pp.35 - 42. ⟨10.3354/dao03740⟩. ⟨anses-04188455⟩
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Elsa Coz, Eric Jouy, Géraldine Cazeau, Nathalie Jarrige, Claire Chauvin, et al.. Evolution of the proportion of colistin-resistant isolates in animal clinical Escherichia coli over time - A hierarchical mixture model approach. Preventive Veterinary Medicine, 2023, 213, pp.105881. ⟨10.1016/j.prevetmed.2023.105881⟩. ⟨anses-04040740⟩
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Benjamin Felix, Karine Capitaine, Sandrine Te, Arnaud Felten, Guillaume Gillot, et al.. Identification by High-Throughput Real-Time PCR of 30 Major Circulating Listeria monocytogenes Clonal Complexes in Europe. Microbiology Spectrum, 2023, 11 (3), ⟨10.1128/spectrum.03954-22⟩. ⟨anses-04170563⟩
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Liliana L Cubas-Gaona, Céline Courtillon, Francois-Xavier Briand, Higor Cotta, Stephanie Bougeard, et al.. High antigenic diversity of serotype 1 infectious bursal disease virus revealed by antigenic cartography. Virus Research, 2023, 323, pp.198999. ⟨10.1016/j.virusres.2022.198999⟩. ⟨anses-03966233⟩
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https://anses.hal.science/anses-03966233/file/High%20antigenic%20diversity%20of%20serotype%201%20infectious%20bursal%20disease%20virus%20revealed%20by%20antigenic%20cartography.pdf BibTex
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Maria Pardos de la Gandara, Nelly Fournet, Laetitia Bonifait, Sophie Lefèvre, Marianne Chemaly, et al.. Countrywide multi-serotype outbreak of Salmonella Bovismorbificans ST142 and monophasic Salmonella Typhimurium ST34 associated with dried pork sausages in France, September 2020* to January 2021. Eurosurveillance, 2023, 28 (2), pp.2200123. ⟨10.2807/1560-7917.es.2023.28.2.2200123⟩. ⟨anses-03981222⟩
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Anne-Laure Boutigny, Benoît Remenant, Bruno Legendre, Véronique Béven, Mathieu Rolland, et al.. Direct Xylella fastidiosa whole genome sequencing from various plant species using targeted enrichment. Journal of Microbiological Methods, 2023, 208, pp.106719. ⟨10.1016/j.mimet.2023.106719⟩. ⟨anses-04074627⟩
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Jeanne Laurentie, Gwenaelle Mourand, Eric Jouy, Stéphanie Bougeard, Alassane Keita, et al.. Study of the effect of administration of narasin or antibiotics on in vivo selection of a narasin- and multidrug-resistant Enterococcus cecorum strain. Veterinary Microbiology, 2023, 282, pp. 109757. ⟨10.1016/j.vetmic.2023.109757⟩. ⟨hal-04083477⟩
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Justine Lagrange, Jean-Philippe Amat, Cristina Ballesteros, Peter Damborg, Thomas Grönthal, et al.. Pilot testing the EARS-Vet surveillance network for antibiotic resistance in bacterial pathogens from animals in the EU/EEA. Frontiers in Microbiology, 2023, 14, pp.1188423. ⟨10.3389/fmicb.2023.1188423⟩. ⟨anses-04188220⟩
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Emilie Delpuech, Marc Vandeputte, Romain Morvezen, Anastasia Bestin, Mathieu Besson, et al.. Whole‐genome sequencing identifies interferon-induced protein IFI6/IFI27-like as a strong candidate gene for VNN resistance in European sea bass. Genetics Selection Evolution, 2023, 55, pp.30. ⟨10.1186/s12711-023-00805-2⟩. ⟨hal-04116035⟩
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https://hal.inrae.fr/hal-04116035/file/2023-Delpuech-VNN-seabass-GSE.pdf BibTex
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Jeanne Laurentie, Gwenaelle Mourand, Pauline Grippon, Sylviane Furlan, Claire Chauvin, et al.. Antimicrobial resistance of Enterococcus cecorum: ECOFF determination. Journal of Clinical Microbiology, In press, ⟨10.1101/2022.10.19.512977⟩. ⟨anses-04188278⟩
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Emmanuel Bréard, Lydie Postic, Mathilde Gondard, Cindy Bernelin-Cottet, Aurélie Le Roux, et al.. Circulation of Bluetongue Virus Serotypes 1, 4, 8, 10 and 16 and Epizootic Hemorrhagic Disease Virus in the Sultanate of Oman in 2020–2021. Viruses, 2023, 15 (6), pp.1259. ⟨10.3390/v15061259⟩. ⟨anses-04145201⟩
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Mihaela Anca Dascalu, Evelyne Picard-Meyer, Emmanuelle Robardet, Alexandre Servat, Serghei Arseniev, et al.. Whole genome sequencing and phylogenetic characterisation of rabies virus strains from Moldova and north-eastern Romania. PLoS Neglected Tropical Diseases, 2023, 17 (7), pp.e0011446. ⟨10.1371/journal.pntd.0011446⟩. ⟨anses-04167834⟩
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Conference papers

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Sylwia Wojtys-Tekiel, Karolina Ucieklak, Laetitia Le Devendec, Sandrine Baron, Marta Kaszowska. Structural diversity among Aeromonas salmonicida O-polysaccharides isolated from ill and healthy fish as an epidemiological tool. 13. International Symposium on Aeromonas and Plesiomonas (ISAP), Jun 2023, Wroclaw, Poland. ⟨anses-04168533⟩
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Karim Tarik Adjou, Aurélie Chevillot, Pierrick Lucas, Yannick Blanchard, Houria Louifi, et al.. First identification of Cryptosporidium parvum virus 1 (CSpV1) in various subtypes of Cryptosporidium parvum from diarrheic calves, lambs and goat kid. Annual meeting of the European Veterinary Parasitology, Jun 2023, Maisons-Alfort, France. ⟨hal-04149600⟩
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Marianne Berthelot, Ariane Andrade, Manon Delalande, Raphaëlle Botreau, Véronique Deiss, et al.. Effects of enriched environment on behaviour, growth and health of goat kids before weaning. The 56th Congress of the International Society for Applied Ethology, Aug 2023, Tallinn, Estonia, France. ⟨hal-04210360⟩
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Karolina Ucieklak, Laetitia Le Devendec, Eric Jouy, Emeline Larvor, Jens Andre Hammerl, et al.. Detection and antimicrobial susceptibility of Plesiomonas shigelloides in a French River. 13. International Symposium on Aeromonas and Plesiomonas (ISAP), Jun 2023, Wroclaw, Poland. ⟨anses-04168523⟩
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Isabelle Palhière, Bailly-Salins Apolline, Antoine Gourdon, de Crémoux Renée, Marianne Berthelot, et al.. Phenotypic and genetic variability of health and welfare traits in French dairy goats. EAAP, Aug 2023, Lyon, France. ⟨hal-04079469⟩
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Lionel Zenner, Lise Froment, Slimania Benabed, Jean-Michel Répérant, Marie-Pierre Callait-Cardinal. Detailed characterization and identification of Eimeria species in Alpine marmots (Marmota marmota): a morphological and morphometric approach. Annual meeting of the European Veterinary Parasitology, Jun 2023, Maisons-Alfort, France. ⟨hal-04171276⟩
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Sandrine Baron, Laetitia Le Devendec, Emeline Larvor, Duprey Héloïse, Eric Jouy, et al.. Antimicrobial susceptibility of isolates of Aeromonas spp. collected in a french river impacted by terrestrial and aquatic farming activities: a 17 months following up. 13. International Symposium on Aeromonas and Plesiomonas (ISAP), Jun 2023, Wroclaw, Poland. ⟨anses-04168500⟩
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Marianne Berthelot, Ariane Andrade, Manon Delalande, Raphaëlle Botreau, Véronique Deiss, et al.. Effets de l'enrichissement du milieu sur le comportement, la croissance et la santé des chevrettes avant sevrage. 52ème colloque de la Société Française pour l'Etude du Comportement Animal (SFECA), May 2023, Tours (FR), France. pp.69. ⟨hal-04210370⟩
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Florian Tomal, Hélène Esselin, Christophe Ripoll, Pierre-Yves Moalic, Rahma Attia El Hili, et al.. Développement d’un modèle in vitro pour cribler l’activité anticoccidienne d’extraits de plantes ou de composés innovants. 12. Colloque International du Consortium anti-Parasitaire et -Fongique (CaPF 2023), Consortium anti-Parasitaire et -Fongique (CaPF), Apr 2023, Tours, France. ⟨hal-04171761⟩
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Other publications

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Fabrice Béline, Annabelle Couvert, Francine de Quelen, Romain Girault, Sabine Houot, et al.. La méthanisation agricole en France : contribution à la transition agroécologique ou opportunité énergétique ?. 2023, pp.France. ⟨hal-04093266⟩
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Poster communications

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Sandrine Baron, Laetitia Le Devendec, Jean Lesne, Xavier Bellanger, Claudia Jäckel, et al.. ICEs in Vibrio cholerae from water samples from France: Occurrence, diversity and impact for human health. 9. Symposium on Antimicrobial Resistance in Animals and the Environment (ARAE), Jul 2023, Tours (France), France. 2023. ⟨anses-04167919⟩
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Garcia-Marin Clémence, Heckmann Aurélie, Lucas Pierrick, Blanchard Yannick, Karadjian Grégory, et al.. Discovery and characterization of genomes of new parasite viruses of interest to veterinary and medical public health: the example of Trichinella spp. viruses. Annual meeting of the European Veterinary Parasitology, Jun 2023, Maisons-Alfort, France. 2023. ⟨hal-04149587⟩
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Rachel Legrand, Camille Gerard, Nicolas Kolytcheff, Estelle Renault, Claire Chauvin. Dépenses de santé et exposition aux antibiotiques des élevages porcins bretons en 2021. 55èmes Journées de la Recherche Porcine, Jan 2023, Paris, France. , 2023. ⟨anses-04072361⟩
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Sandrine Baron, Laetitia Le Devendec, Claudia Jäckel, Jens Andre Hammerl, Claire Chauvin, et al.. Assessment of the diffusion of AMR in aquatic environments: specificity of river fish farming. 9. Symposium on Antimicrobial Resistance in Animals and the Environment (ARAE), Jul 2023, Tours (France), France. 2023. ⟨anses-04167875⟩
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Sandrine Baron, Laetitia Le Devendec, Emeline Larvor, Eric Jouy, Aurélien Tocqueville, et al.. One Health approach applied to the following up of antimicrobial resistance dissemination in freshwater fishfarms at the watershed level. 8. Symposium on Antimicrobial Resistance in Animals and the Environment (ARAE), Jul 2023, Tours (France), France. 2023. ⟨anses-04167901⟩
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Maud Contrant, Lionel Bigault, Ludivine Percevault, Camille Duschesne, Frédéric Paboeuf, et al.. Utilisation des organoïdes intestinaux porcins pour l’étude du virus de la gastro-entérite transmissible. 55. Journées de la Recherche Porcine (JRP), Jan 2023, Paris, France. Ifip, 55, pp.415-416, 2023, 55èmes Journées de la recherche porcine. ⟨anses-04072398⟩
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Sandrine Baron, V. E. Paquet, S. L. Bourque, T. N. V. Can, S. A. Attéré, et al.. Study of the diversity of strains of Aeromonas salmonicida isolated in the fish farming context in France. 13. International Symposium on Aeromonas and Plesiomonas (ISAP), Jun 2023, Wroclaw, Poland, Poland. 2023. ⟨anses-04168196⟩
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Laetitia Le Devendec, Maï-Lan Tran, Emeline Larvor, Eric Jouy, Isabelle Kempf, et al.. Mechanism reducing carbapenem susceptibility of environmental E. coli isolates. 9. Symposium on Antimicrobial Resistance in Animals and the Environment (ARAE), Jul 2023, Tours (France), France. 2023. ⟨anses-04168112⟩
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Jean-Sébastien Py, Maureen Feucherolles, Yann Vanrobaeys, Eric Jouy, Laetitia Le Devendec, et al.. Improvement of maldi-tof for the identification of Aeromonas salmonicida and Aeromonas bestiarum : two important fish pathogen. 13. International Symposium on Aeromonas and Plesiomonas (ISAP), Jun 2023, Wroclaw, Poland. 2023. ⟨anses-04168208⟩
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Clémence Garcia-Marin, Aurélie Heckmann, Pierrick Lucas, Yannick Blanchard, Grégory Karadjan, et al.. Découverte et caractérisation de nouveaux virus de parasites. Journées francophone de Virologie, Apr 2023, Paris, France. ⟨anses-04142520⟩
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Maxime Delsart, Nicolas Rose, Barbara Dufour, Jean-Michel Répérant, Radi Blaga, et al.. Herd factors associated with levels of parasitism in alternative pig farms. Annual meeting of the European Veterinary Parasitology, Jun 2023, Maisons-Alfort, France. 2023. ⟨hal-04171240⟩
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Laura Warin, Maryse Guinebretière, Sophie Brajon, Emilie Gregorio, Estelle Guerin, et al.. Provision of enrichments to meet the behavioral needs of broilers. XI. European Symposium on Poultry Welfare, Jun 2023, Prague, Czech Republic. 2023. ⟨hal-04175175⟩
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Eric Jouy, Laetitia Le Devendec, Fabrice Touzain, Virginie Le Caër, Thomas Lemoine, et al.. Augmentation de la prévalence de Staphylococcus aureus résistant à la méticilline dans les élevages de porcs en France. 55èmes Journées de la Recherche Porcine, Jan 2023, Paris, France. , 55, pp.421-422, 2023. ⟨anses-04072441⟩
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Anne V. Gautier-Bouchardon, Maryne Jaÿ, Sara M. Klose, Annet Heuvelink, Inna Lysnyansky, et al.. MyMIC: a network for standardization of diagnostics, antimicrobial susceptibility testing and clinical interpretation in animal mycoplasmas. 9. Symposium on Antimicrobial Resistance in Animals and the Environment (ARAE), Jul 2023, Tours (France), France. 2023. ⟨anses-04168078⟩
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Reports

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Emmanuelle Gilot-Fromont, Isabelle Villena, Elsa Bonnaud, Claude Fischer, Etienne Giraud, et al.. Évaluation des impacts sur la santé publique de la dynamique des populations de renards. Saisine n°2022-SA-0049, Anses. 2023, 200 p. ⟨anses-04171242⟩
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Monique L'Hostis, Pierre Autef, Philippe Berny, Marc Delanoe, Jean-Claude Desfontis, et al.. Évaluation des risques pour la santé humaine et l’environnement et recommandations pour leur maîtrise, dans le cadre de l’administration des médicaments vétérinaires antiparasitaires externes sous forme de bains, douches et pulvérisations en élevages de ruminants. Saisine n°2018-SA-0269, Anses. 2023, 282 p. ⟨anses-04169848⟩
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Béatrice Grasland, Audrey Schmitz, Éric Niqueux, Rachel Busson, Nadège Morin, et al.. Expérimentation de vaccination des canards mulards en élevage contre un virus influenza aviaire hautement pathogène A(H5N1) clade 2.3.4.4b. ANSES; ENVT. 2023. ⟨hal-04158032⟩
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Barbara Dufour, Mariette, Ducatez, Benoit Durand, Nicolas Eterradossi, Hervé Juin, et al.. Avis de l'Anses relatif à l’élaboration d’une stratégie nationale de vaccination au regard de l’influenza aviaire hautement pathogène en France métropolitaine. Saisine n° 2022-SA-0165, Anses. 2023, 37 p. ⟨anses-04171558⟩
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Preprints, Working Papers, ...

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Marine Wasniewski, Franck Boué, Céline Richomme, Etienne Simon-Lorière, Sylvie van der Werf, et al.. Investigations on SARS-CoV-2 and other coronaviruses in mink farms in France at the end of the first year of COVID-19 pandemic. 2023. ⟨pasteur-04073331⟩
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2022

Journal articles

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Noemie Gloanec, Daniel Dory, Ségolène Quesne, Véronique Béven, Typhaine Poezevara, et al.. Impact of DNA Prime/Protein Boost Vaccination against Campylobacter jejuni on Immune Responses and Gut Microbiota in Chickens. Vaccines, 2022, 10 (6), pp.981. ⟨10.3390/vaccines10060981⟩. ⟨hal-03718350⟩
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Sophie Le Bouquin-Leneveu, Camille Lucas, Rozenn Souillard, Caroline Le Maréchal, Karine Petit, et al.. Human and animal botulism surveillance in France from 2008 to 2019. Frontiers in Public Health, 2022, 10, pp.1003917. ⟨10.3389/fpubh.2022.1003917⟩. ⟨anses-03899782⟩
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Evelyne Lemaitre, Stéphanie Bougeard, Chantal Allée, Nicolas Eterradossi, Céline Courtillon, et al.. Avian metapneumovirus: A five-plex digital droplet RT-PCR method for identification of subgroups A, B, C, and D. Frontiers in Veterinary Science, 2022, 9, pp.1058294. ⟨10.3389/fvets.2022.1058294⟩. ⟨anses-03965626⟩
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Megan Hahn, Agnes Piecyk, Fátima Jorge, Robert Cerrato, Martin Kalbe, et al.. Host phenotype and microbiome vary with infection status, parasite genotype, and parasite microbiome composition. Molecular Ecology, 2022, 31 (5), pp.1577-1594. ⟨10.1111/mec.16344⟩. ⟨hal-03778887⟩
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Gissandra F. Braz, Marcos Bryan Heinemann, Jenner K.P. Reis, Bruno M. Teixeira, Juliano C.M. Cruz, et al.. Genetic and antigenic characterization of Brazilian SRLV strains: Natural small ruminant interspecies transmission from mixed herds.. Infection, Genetics and Evolution, 2022, 103, pp.105322. ⟨10.1016/j.meegid.2022.105322⟩. ⟨anses-03799030⟩
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Aurore Fablet, Cindy Kundlacz, Juliette Dupré, Edouard Hirchaud, Lydie Postic, et al.. Comparative Virus-Host Protein Interactions of the Bluetongue Virus NS4 Virulence Factor. Viruses, 2022, 14 (2), pp.182. ⟨10.3390/v14020182⟩. ⟨anses-03659032⟩
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Mélanie Martignon, Christine Burel, Maryse Guinebretière, Gilbert Postollec, Didier Huonnic, et al.. Feeding behaviour of the growing rabbit fed freely or restricted, and impact on performances and digestive organs. World Rabbit Science, 2022, 30 (2), pp.119-130. ⟨10.4995/wrs.2022.14513⟩. ⟨hal-03714656⟩
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Alassane Keita, Laetitia Le Devendec, Michel Amelot, Julie Puterflam, Camille Lucas, et al.. Efficacy of passive immunization in broiler chicks via an inactivated Escherichia coli autogenous vaccine administered to broiler breeder hens. Avian Pathology, 2022, 51 (5), pp.445-456. ⟨10.1080/03079457.2022.2084362⟩. ⟨hal-03700012⟩
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Fátima Jorge, Jaelle Brealey, Paul Brindley, Marie Buysse, Cinzia Cantacessi, et al.. MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms. ISME Communications, 2022, 2 (1), pp.9. ⟨10.1038/s43705-022-00092-w⟩. ⟨hal-03701954⟩
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Benjamin Félix, Yann Sevellec, Federica Palma, Pierre Emmanuel Douarre, Arnaud Felten, et al.. A European-wide dataset to uncover adaptive traits of Listeria monocytogenes to diverse ecological niches. Scientific Data , 2022, 9 (1), pp.190. ⟨10.1038/s41597-022-01278-6⟩. ⟨anses-03665051⟩
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Anne Pohlmann, Jacqueline King, Alice Fusaro, Bianca Zecchin, Ashley C Banyard, et al.. Has Epizootic Become Enzootic? Evidence for a Fundamental Change in the Infection Dynamics of Highly Pathogenic Avian Influenza in Europe, 2021. mBio, 2022, 13 (4), pp.e0060922. ⟨10.1128/mbio.00609-22⟩. ⟨anses-03980454⟩
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François‐xavier Briand, Eric Niqueux, Audrey Schmitz, Claire Martenot, Martine Cherbonnel, et al.. Multiple independent introductions of highly pathogenic avian influenza H5 viruses during the 2020–2021 epizootic in France. Transboundary and emerging diseases, 2022, 69 (6), pp.4028-4033. ⟨10.1111/tbed.14711⟩. ⟨anses-03966161⟩
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Rozenn Souillard, Jeanne Laurentie, Isabelle Kempf, Virginie Le Caër, Sophie Le Bouquin, et al.. Increasing incidence of Enterococcus-associated diseases in poultry in France over the past 15 years. Veterinary Microbiology, 2022, 269, pp.109426. ⟨10.1016/j.vetmic.2022.109426⟩. ⟨anses-03658970⟩
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Annonciade Molinet, Céline Courtillon, Maryvonne Le Men, Nadia Amenna-Bernard, Charlotte Retaux, et al.. Full-Length Genome Sequence of a Novel European Antigenic Variant Strain of Infectious Bursal Disease Virus. Microbiology Resource Announcements, 2022, 11 (7), pp.e0010222. ⟨10.1128/mra.00102-22⟩. ⟨anses-03815400⟩
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Peter Walker, Laurent Bigarré, Gael Kurath, Laurent Dacheux, Laurane Pallandre. Revised Taxonomy of Rhabdoviruses Infecting Fish and Marine Mammals. Animals, 2022, 12 (11), pp.1363. ⟨10.3390/ani12111363⟩. ⟨anses-03798567⟩
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Juliette Dupré, Marie-Frédérique Le Potier, Damien Vitour, Grégory Caignard. Modulation de la réponse immunitaire innée par le virus de la peste porcine africaine. Virologie, 2022, 26 (5), pp.387-400. ⟨10.1684/vir.2022.0974⟩. ⟨anses-03878835⟩
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Rima El Hage, Youssef El Rayess, Laetitia Bonifait, Bassam El Hafi, Louise Baugé, et al.. A national study through a ‘Farm‐to‐fork’ Approach to determine Salmonella dissemination along with the Lebanese poultry production chain. Zoonoses and Public Health, 2022, 69 (5), pp.499-513. ⟨10.1111/zph.12939⟩. ⟨anses-03659090⟩
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Charlotte Valat, Marisa Haenni, Youssef Arnaout, Antoine Drapeau, Edouard Hirchaud, et al.. F74 plasmids are major vectors of virulence genes in bovine NTEC2. Letters in Applied Microbiology, 2022, 75 (2), pp.355-362. ⟨10.1111/lam.13733⟩. ⟨anses-03715577⟩
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Valérie Courboulay, B. Barbier, T. Bellec, Xavier Boivin, M. Delion, et al.. RHAPORC - Améliorer la relation homme animal en élevage porcin au bénéfice de l’homme et de ses animaux.. Innovations Agronomiques, 2022, 85, pp.323-334. ⟨10.17180/ciag-2022-vol85-art25⟩. ⟨hal-03784093⟩
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Lu Luo, Lisette E van Der Zande, Manon a Van Marwijk, Egbert Frank Knol, T. Bas Rodenburg, et al.. Impact of enrichment and repeated mixing on resilience in pigs. Frontiers in Veterinary Science, 2022, 9, ⟨10.3389/fvets.2022.829060⟩. ⟨hal-03837309⟩
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Arnaud Fichant, Arnaud Felten, Armel Gallet, Olivier Firmesse, Mathilde Bonis. Identification of Genetic Markers for the Detection of Bacillus thuringiensis Strains of Interest for Food Safety. Foods, 2022, 11 (23), pp.3924. ⟨10.3390/foods11233924⟩. ⟨hal-04043411⟩
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Delphine Urban, Anne Chevance, Damien Bouchard, Claire Chauvin, Jean-Pierre Orand, et al.. Réduction de l’utilisation des antibiotiques en filières animales : Quelles mesures, quels résultats, quelles perspectives ?. INRAE Productions Animales, 2022, 35 (4), pp.7189. ⟨10.20870/productions-animales.2022.35.4.7189⟩. ⟨anses-03978108⟩
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Laetitia Bonifait, Hélène Marfaing, Anne Le Roux, Hervé Jaunet, Ronan Pierre, et al.. Research Note: Effect of a phlorotannin extract of the brown seaweed Ascophyllum nodosum as a potential control strategy against Campylobacter in broilers. Poultry Science, 2022, 101 (9), pp.101994. ⟨10.1016/j.psj.2022.101994⟩. ⟨anses-03799140⟩
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Isabelle Kempf, Laetitia Le Devendec, Pierrick Lucas, Céline Druilhe, Anne-Marie Pourcher. Impact of mesophilic anaerobic digestion and post-treatment of digestates on the transfer of conjugative antimicrobial resistance plasmids. Waste Management, 2022, 152, pp.1-5. ⟨10.1016/j.wasman.2022.08.002⟩. ⟨anses-03879183⟩
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Mathilde Paul, Mily Leblanc-Maridor, Nathalie Rousset, Anne Hemonic, Jocelyn Marguerie, et al.. Evolution of antimicrobial usages in monogastric species industries: state of progress and prospects. INRAE Productions Animales, 2022, 35 (4), pp.293-306. ⟨10.20870/productions-animales.2022.35.4.7322⟩. ⟨hal-04058446⟩
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Anqi Wang, Xiaolei Liu, Aurélie Heckmann, Grégory Caignard, Damien Vitour, et al.. A Trichinella spiralis new born larvae-specific protein, Ts-NBL1, interacts with host’s cell vimentin. Parasitology Research, 2022, 121 (5), pp.1369-1378. ⟨10.1007/s00436-022-07479-7⟩. ⟨anses-03659181⟩
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Maarten Nauta, Declan Bolton, Matteo Crotta, Johanne Ellis-Iversen, Thomas Alter, et al.. An updated assessment of the effect of control options to reduce Campylobacter concentrations in broiler caeca on human health risk in the European Union. Microbial Risk Analysis, 2022, 21, pp.100197. ⟨10.1016/j.mran.2021.100197⟩. ⟨anses-03594995⟩
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Mathieu Andraud, Pachka Hammami, Brandon Hastings Hayes, Jason A. Galvis, Timothée Vergne, et al.. Modelling African swine fever virus spread in pigs using time‐respective network data: Scientific support for decision makers. Transboundary and emerging diseases, 2022, 69 (5), pp.e2132-e2144. ⟨10.1111/tbed.14550⟩. ⟨anses-03888302⟩
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Virginie Guérin, Alban Farchi, Frédéric Cawez, Paola Mercuri, Pierrick Lucas, et al.. A three-year evolution and comparison of the bla genes in pathogenic and non-pathogenic Escherichia coli isolated from young diarrheic and septicaemic calves in Belgium. Research in Veterinary Science, 2022, 152, pp.647-650. ⟨10.1016/j.rvsc.2022.09.037⟩. ⟨anses-03980264⟩
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Jennifer Tardiveau, Lerica Leroux-Pullen, Ronette Gehring, Gaël Touchais, Marie-Pierre Chotard, et al.. A physiologically based pharmacokinetic (PBPK) model exploring the blood-milk barrier in lactating species - A case study with oxytetracycline administered to dairy cows and goats. Food and Chemical Toxicology, 2022, 161, pp.112848. ⟨10.1016/j.fct.2022.112848⟩. ⟨hal-03615752⟩
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Cornelia Adlhoch, Alice Fusaro, José L Gonzales, Thijs Kuiken, Stefano Marangon, et al.. Avian influenza overview May – September 2021. EFSA Journal, 2022, 20 (1), pp.e07122. ⟨10.2903/j.efsa.2022.7122⟩. ⟨anses-03980226⟩
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Nolwenn Dheilly, Pierrick Lucas, Yannick Blanchard, Karyna Rosario. A World of Viruses Nested within Parasites: Unraveling Viral Diversity within Parasitic Flatworms (Platyhelminthes). Microbiology Spectrum, 2022, 10 (3), pp.e00138-22. ⟨10.1128/spectrum.00138-22⟩. ⟨hal-03778735⟩
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Debapriyo Chakraborty, Claire Guinat, Nicola F. Müller, Francois-Xavier Briand, Mathieu Andraud, et al.. Phylodynamic analysis of the highly pathogenic avian influenza H5N8 epidemic in France, 2016–2017. Transboundary and emerging diseases, 2022, 69 (5), pp.e1574-e1583. ⟨10.1111/tbed.14490⟩. ⟨anses-03659141⟩
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Gustavo Machado, Trevor Farthing, Mathieu Andraud, Francisco Paulo Nunes Lopes, Cristina Lanzas. Modelling the role of mortality‐based response triggers on the effectiveness of African swine fever control strategies. Transboundary and emerging diseases, 2022, 69 (4), pp.e532-e546. ⟨10.1111/tbed.14334⟩. ⟨anses-03815003⟩
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Pachka Hammami, Stefan Widgren, Vladimir Grosbois, Andrea Apolloni, Nicolas Rose, et al.. Complex network analysis to understand trading partnership in French swine production. PLoS ONE, 2022, 17 (4), pp.e0266457. ⟨10.1371/journal.pone.0266457⟩. ⟨hal-03652449⟩
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