Publications HAL du labo/EPI 122678

2026

Journal articles

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Cécile Mangavel, Chloé Gapp, Magda Corgneau, Alexis Dijamentiuk, Xincheng Liu, et al.. Harnessing ecological niche modeling of Listeria monocytogenes for biopreservation system engineering. Food Microbiology, 2026, 133, pp.104865. ⟨10.1016/j.fm.2025.104865⟩. ⟨hal-05212846⟩
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2025

Journal articles

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Anna Bencsik, Emmanuelle Chiffoleau. Laboratoire durable : plastique responsable, saurons-nous relever le défi. Revue Française d'Histotechnologie, 2025, 37 (1), pp.205-219. ⟨10.25830/afh.rfh.2025.37.1.205⟩. ⟨anses-05129641⟩
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https://anses.hal.science/anses-05129641/file/Bencsik%202025%20Laboratoire%20durable%20plastique%20responsable%2C%20saurons-nous%20relever%20le%20d%C3%A9fi.pdf BibTex
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Jean-Baptiste Maison, Fleur Boulet, Claire A.M. Becker, Mathieu Magnin. Thrombose aortique et thromboembolie chez les bovins. Le Point vétérinaire, 2025, 56 (470), pp.84-88. ⟨hal-05305305⟩
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Kristýna Brodíková, Thibault Destanque, Marisa Haenni, Renáta Karpíšková. Clonal Complex 398 Methicillin-Resistant Staphylococcus aureus Producing Panton-Valentine Leukocidin, Czech Republic, 2023. Emerging Infectious Diseases, 2025, 31 (1), pp.174-177. ⟨10.3201/eid3101.241323⟩. ⟨anses-04859059⟩
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https://anses.hal.science/anses-04859059/file/Brodikova_CC398PVL_EID2025.pdf BibTex
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Nicolas Desneux, Andrea Battisti, Anne-Sophie Brinquin, Rudy Caparros-Megido, Gilbert Gault, et al.. Opinion and report of the French Agency for Food, Environmental and Occupational Health & Safety (ANSES) relating to an analysis of the health risks associated with exposure to caterpillars with stinging hairs and the development of management recommendations. Food Risk Assess Europe, 2025, 3, pp.0060E. ⟨10.2903/fr.efsa.2025.FR-0060⟩. ⟨hal-05429126⟩
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https://hal.science/hal-05429126/file/2025_Desneux_Food%20Risk%20Assess%20Europe.pdf BibTex
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Séverine Fontaine-Laboureur. Eclairage sur les travaux de l'Anses et de l'ITB concernant la résistance de la cercosporiose. Betteravier Français, 2025, 1202, pp.22-23. ⟨anses-05128027⟩
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Johann Vulin, Fabien Chauveau, Chloé Duret, Muris Humo, Marco Valdebenito, et al.. Behavioural, biochemical and functional phenotyping of subchronic exposure to chlordecone in mice. NeuroToxicology, 2025, 111, pp.103334. ⟨10.1016/j.neuro.2025.103334⟩. ⟨anses-05327793⟩
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Nunzio Sarnino, Subhasish Basak, Lucie Collineau, Roswitha Merle. Recreational Water Risk from Extended-Spectrum Beta-Lactamase-Producing Escherichia coli of Broiler Origin: A Quantitative Microbial Risk Assessment. Environments, 2025, 12 (11), pp.403. ⟨10.3390/environments12110403⟩. ⟨anses-05354045⟩
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https://anses.hal.science/anses-05354045/file/Sarnino%20Nunzio%202025%20RecreationalWater%20Risk%20from%20Extended-Spectrum.pdf BibTex
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Giffona Loysell Justinia Hanitravelo, Guillaume Lhermie, Diego Manriquez, Viviane Henaux, Benoit Durand, et al.. Cost-effectiveness assessment of alternative surveillance measures for bovine tuberculosis using stochastic modeling simulation. Preventive Veterinary Medicine, 2025, 237, pp.106443. ⟨10.1016/j.prevetmed.2025.106443⟩. ⟨anses-04938845⟩
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Maryne Jaÿ, Sara Klose, Marco Bottinelli, Tiina Autio, Claire A.M. Becker, et al.. Advancing standardization of diagnostics and antimicrobial susceptibility testing for pathogenic mycoplasmas of livestock origin: insights from the MyMIC network. BMC Veterinary Research, 2025, 21 (1), pp.712. ⟨10.1186/s12917-025-05154-4⟩. ⟨anses-05465628⟩
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Maïssane Chikh, David Ngwa-Mbot, Eric Morignat, Sophie Memeteau, Jean-Philippe Amat. OASIS evaluation of the French laboratory diagnostic surveillance system: right people, right techniques but imperfect use. Frontiers in Veterinary Science, 2025, 12, pp.1419034. ⟨10.3389/fvets.2025.1419034⟩. ⟨anses-05265149⟩
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https://anses.hal.science/anses-05265149/file/Ma%C3%AFssane%20Chikh%202025%20OASIS%20evaluation%20of%20the%20French%20laboratory%20diagnostic%20surveillance%20system%20right%20people%2C%20right%20techniques%20but%20imperfect%20use.pdf BibTex
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Nadia Jaidane, Wejdene Mansour, Lamia Tilouche, Pierre Châtre, Pauline François, et al.. OXA-204 Carbapenemase in Clinical Isolate of Pseudomonas guariconensis, Tunisia. Emerging Infectious Diseases, 2025, 31 (6), ⟨10.3201/eid3106.250131⟩. ⟨anses-05094097⟩
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Nadia Jaidane, Thierry Naas, Sameh Boughattas, Laetitia Du Fraysseix, Lamia Tilouche, et al.. Occurrence of mcr-1.1-producing Escherichia coli in clinical settings in Tunisia. Journal of Global Antimicrobial Resistance, 2025, 44, pp.149 - 151. ⟨10.1016/j.jgar.2025.06.011⟩. ⟨anses-05166544⟩
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https://anses.hal.science/anses-05166544/file/Jaidane_mcrTunisia_JGAR2025.pdf BibTex
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Marisa Haenni, Pierre Châtre, Antoine Drapeau, Géraldine Cazeau, Jonathan Troncy, et al.. Distinct molecular epidemiology of resistances to extended-spectrum cephalosporins and carbapenems in Enterobacter hormaechei in cats and dogs versus horses in France. Journal of Antimicrobial Chemotherapy, 2025, 80 (2), pp.567-575. ⟨10.1093/jac/dkae448⟩. ⟨anses-04926358⟩
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https://anses.hal.science/anses-04926358/file/Haenni_Enterobacter_JAC2025.pdf BibTex
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Leila Hamze, Estelle Saras, Sana Azaiez, Wejdene Mansour, Jean-Yves Madec, et al.. Susceptibility of Acinetobacter baumannii isolates from different sources to biocides: a matter of biofilm. Antimicrobial Resistance and Infection Control, 2025, 14 (1), pp.147. ⟨10.1186/s13756-025-01658-8⟩. ⟨anses-05391172⟩
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https://anses.hal.science/anses-05391172/file/Hamze_AbBiocides_ARIC2025.pdf BibTex
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Morgane Moustaghfir, Bernadette Espana, Karine Hauray, Rémi Charretier, Abdessalem Hammed, et al.. Pharmacokinetics Study and Modelling of Amoxicillin After Intramuscular Administration in Veal Calves Suffering From Omphalitis. Journal of Veterinary Pharmacology and Therapeutics, 2025, ⟨10.1111/jvp.70016⟩. ⟨hal-05218356⟩
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Imen Hmidi, Meriem Souguir, Véronique Métayer, Antoine Drapeau, Pauline François, et al.. Characterization of Enterobacterales Resistant to Extended-Spectrum Cephalosporins Isolated from Meat in Tunisia. Journal of Food Protection, 2025, 88 (11), pp.100610. ⟨10.1016/j.jfp.2025.100610⟩. ⟨anses-05288013⟩
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https://anses.hal.science/anses-05288013/file/Hmidi_ESBLmeat_JFP2025.pdf BibTex
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Lucie Collineau, Soukaina Ait Ali, Servane Bareille, Claire Chauvin, Marisa Haenni, et al.. Evaluating the impact of a 10 year reduction in critically important antibiotic use on the occurrence of antibiotic resistance in E. coli from cattle, dogs and cats in France. JAC-Antimicrobial Resistance, 2025, 7 (6), pp.1-8. ⟨10.1093/jacamr/dlaf207⟩. ⟨anses-05387624⟩
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Tristan Berger, Sonja Boland, Emmanuel Flahaut, Corinne Chanéac, Anna Bencsik. Towards a nuanced application of the established hierarchy integrating specific adaptations to nanomaterial risk management: comment on the article by Omari Shekaftik et al. (J Nanopart Res (2023) 25, 245) regarding an analysis of “hierarchy of controls” in workplaces and laboratories involving nanomaterials. Journal of Nanoparticle Research, 2025, 27 (11), pp.279. ⟨10.1007/S11051-025-06473-1⟩. ⟨hal-05329038⟩
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Lilian Bruyère-Ostells, Jérémy Verchère, Dominique Bétemps, Florian Almela, Thierry Baron, et al.. Subclinical detection of misfolded alpha-synuclein in the blood of M83 mice. Acta Neuropathologica, 2025, 150 (1), pp.2. ⟨10.1007/s00401-025-02909-z⟩. ⟨anses-05221652⟩
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Géraldine Cazeau, Briac Virey, Carole Sala, Renaud Lailler, Adeline Huneau-Salaün, et al.. Is a syndromic approach well suited to foodborne disease surveillance? Implication for salmonellosis surveillance and prevention in France from a “One Health” perspective. Preventive Veterinary Medicine, 2025, 236, pp.106422. ⟨10.1016/j.prevetmed.2025.106422⟩. ⟨anses-04926121⟩
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Marisa Haenni, Pierre Châtre, Racha Beyrouthy, Antoine Drapeau, Pauline François, et al.. No genetic link between E. coli isolates carrying mcr-1 in bovines and humans in France. Journal of Global Antimicrobial Resistance, 2025, 41, pp.111-116. ⟨10.1016/j.jgar.2024.12.021⟩. ⟨anses-04894989⟩
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https://anses.hal.science/anses-04894989/file/Haenni_mcrHumanBovine_JGAR2025.pdf BibTex
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Rachel Contarin, Séverine Murri, Antoine Drapeau, Tom Cayssials, Jean-Yves Madec, et al.. Comprehensive genomic analysis of antibiotic resistance plasmids in animal-associated Staphylococcus aureus in France. Microbiology Spectrum, 2025, 13 (10), ⟨10.1128/spectrum.00772-25⟩. ⟨anses-05316144⟩
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https://anses.hal.science/anses-05316144/file/Contarin_SAplasmids_MicrobSpectrum2025.pdf BibTex
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Sandra Martínez-Álvarez, Ursula Höfle, Pierre Châtre, Carla Andrea Alonso, María Ángeles Asencio-Egea, et al.. One Health bottom-up analysis of the dissemination pathways concerning critical priority carbapenemase- and ESBL-producing Enterobacterales from storks and beyond. Journal of Antimicrobial Chemotherapy, 2025, 80 (1), pp.68-78. ⟨10.1093/jac/dkae371⟩. ⟨anses-04869228⟩
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Sandra Martínez-Álvarez, Pierre Châtre, Pauline François, Myriam Zarazaga, Jean-Yves Madec, et al.. Comparative phylogenomics of extended-spectrum beta-lactamase-producing Escherichia coli revealed a wide diversity of clones and plasmids in Spanish chicken meat. International Journal of Food Microbiology, 2025, 426, pp.110900. ⟨10.1016/j.ijfoodmicro.2024.110900⟩. ⟨anses-04704434⟩
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https://anses.hal.science/anses-04704434/file/Martinez-Alvarez_ChickenSpain_IJFM2024.pdf BibTex
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Subhasish Basak, Nunzio Sarnino, Roswitha Merle, Lucie Collineau. Quantification of the risk of Extended-Spectrum Beta-Lactamase producing Escherichia coli colonization in humans through occupational exposure in broiler production. Microbial Risk Analysis, 2025, 30, pp.100349. ⟨10.1016/j.mran.2025.100349⟩. ⟨anses-05219564⟩
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Philippe Gourlay, Caroline Lefrère, Julie Botman, Dianjara Rakotoharisoa, Nadine Brisseau, et al.. Epidemiological and Clinical Profile of Methicillin-Resistant Staphylococcus aureus (MRSA) Infections in European Hedgehogs (Erinaceus europaeus) Treated at a Wildlife Health Center in Northwestern France. Journal of wildlife diseases, 2025, 61 (2), ⟨10.7589/JWD-D-24-00128⟩. ⟨anses-05074345⟩
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Julie Teresa Shapiro, Géraldine Cazeau, Romane Dibiagio, Céline Dupuy, Eric Morignat, et al.. Current practice and future directions in syndromic surveillance for animal health: A scoping review and analysis. Preventive Veterinary Medicine, 2025, 241, pp.106532. ⟨10.1016/j.prevetmed.2025.106532⟩. ⟨anses-05061802⟩
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Manon Vastel, Patrice Gaurivaud, Florence Tardy, Anne V. Gautier-Bouchardon. Standardized analysis of nuclease activities in Mycoplasma species colonizing swine, poultry, and small ruminants. FEMS Microbiology Letters, 2025, 372, pp.fnaf057. ⟨10.1093/femsle/fnaf057⟩. ⟨anses-05129486⟩
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A. Bencsik, Nathalie Accart. L’histologie se met au parfum de l’olfaction ou comment les odeurs nous font parfois tourner la tête. Revue Française d'Histotechnologie, 2025, 37 (1), pp.13-31. ⟨anses-05129599⟩
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Morgane Moustaghfir, Thibault Destanque, Pauline François, Pierre Châtre, Vanessa Louzier, et al.. Changes in fecal microbiota after therapeutic exposure to amoxicillin-clavulanic acid in veal calves receiving multiple antibiotics. Microbiology Spectrum, 2025, 13 (12), pp.e0131625. ⟨10.1128/spectrum.01316-25⟩. ⟨anses-05422125⟩
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https://anses.hal.science/anses-05422125/file/Moustaghfir_MicrobioteCalves_MicroSpectrum2025.pdf BibTex
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Sergio Gabriel Olvera-Vazquez, Xilong Chen, Aurélie Mesnil, Camille Meslin, Fabricio Almeida-Silva, et al.. Comprehensive annotation of olfactory and gustatory receptor genes and transposable elements revealed their evolutionary dynamics in aphids. Molecular Biology and Evolution, 2025, 42 (12), pp.msaf238. ⟨10.1093/molbev/msaf238⟩. ⟨anses-05299488⟩
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Marisa Haenni, Séverine Murri, Antoine Drapeau, Iarimino Rafidinarivo, Stéphanie Gilles, et al.. Emergence of MRSA ST612 in horses and of MSSA CC398 in cats in France. Journal of Antimicrobial Chemotherapy, 2025, ⟨10.1093/jac/dkaf027⟩. ⟨hal-04974631⟩
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Sofia Mlala, Sébastien Picault, Carole Sala, Pierre Villard, Jean-Luc Vinard, et al.. Assessing the efficiency of the bovine brucellosis surveillance-control system in a disease-free context through agent-based modelling. Veterinary Research, 2025, 56 (1), pp.120. ⟨10.1186/s13567-025-01549-1⟩. ⟨hal-05118048⟩
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https://hal.inrae.fr/hal-05118048/file/Mlala%20et%20al.%20-%202025%20-%20Assessing%20the%20efficiency%20of%20the%20bovine%20brucellosis.pdf BibTex
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Elissa Khamisse, Xavier Bertrand, Damien Bouchard, Lucie Collineau, Olivier Fortineau, et al.. Rethinking the role of animals in antimicrobial resistance. The Lancet Microbe, 2025, 29, pp.101248. ⟨10.1016/j.lanmic.2025.101248⟩. ⟨anses-05298875⟩
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https://anses.hal.science/anses-05298875/file/Khamisse_Lancet%20Microbe_Comment_2025.pdf BibTex
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Domenic Burger, Marianna Kashyrina, Lukas van den Heuvel, Hortense de la Seiglière, Amanda J Lewis, et al.. Synthetic α-synuclein fibrils replicate in mice causing MSA-like pathology. Nature, 2025, ⟨10.1038/s41586-025-09698-1⟩. ⟨hal-05356048⟩
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Claire Chauvin, Eric Jouy, Anne Chevance, Corinne Jaureguy, Xavier Sauzea, et al.. Decrease in colistin resistance among young bovine and pig productions in France: relationship with colistin usage and stewardship measures. Journal of Antimicrobial Chemotherapy, 2025, 80 (12), pp.3227-3235. ⟨10.1093/jac/dkaf322⟩. ⟨anses-05333428⟩
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Marlène Roy, Sandra Lacôte, Sophie Desloire, Adrien Thiesson, Coralie Pulido, et al.. Two strains of Toscana virus show different virulence and replication capacity in mice and cell culture models. Virulence, 2025, 16 (1), pp.2535470. ⟨10.1080/21505594.2025.2535470⟩. ⟨hal-05177310⟩
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Sandra Martínez-Álvarez, Susana Sanz, Pierre Châtre, María de Toro, Carmen Olarte, et al.. Interplay between bacterial clones and plasmids in the spread of blaSHV-12- and blaCTX-M-14-carrying Escherichia coli from the livestock environment. One Health, 2025, 20, pp.101058. ⟨10.1016/j.onehlt.2025.101058⟩. ⟨anses-05130362⟩
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https://anses.hal.science/anses-05130362/file/Martinez_ESBLlivestock_OneHealth2025.pdf BibTex
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Lucie Collineau. Épidémiologie de la résistance aux antibiotiques chez l’animal. Bulletin de l'Académie Vétérinaire de France, 2025, 178, ⟨10.3406/bavf.2025.71142⟩. ⟨anses-05302287⟩
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Jean-Baptiste Maison, Fleur Boulet, Claire A.M. Becker, Mathieu Magnin. Thrombose et thromboembolie aortiques chez deux veaux. Le Point vétérinaire, 2025, 56 (470), pp.74-79. ⟨hal-05305182⟩
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Corentin Blanchais, Carine Pages, Manuel Campos, Kenza Boubekeur, Rachel Contarin, et al.. Interplay between the Xer recombination system and the dissemination of antibioresistance in Acinetobacter baumannii. Nucleic Acids Research, 2025, 53 (1), ⟨10.1093/nar/gkae1255⟩. ⟨hal-04888847⟩
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Nunzio Sarnino, Subhasish Basak, Lucie Collineau, Roswitha Merle. Pathways of Escherichia coli transfer from animal manure: risks and mitigation in agriculture. Frontiers in Public Health, 2025, 13, ⟨10.3389/fpubh.2025.1568621⟩. ⟨anses-05107415⟩
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https://anses.hal.science/anses-05107415/file/Sarnino%20Nunzio%202025%20Pathways%20of%20Escherichia%20coli.pdf BibTex

Conference papers

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Matthieu Martineau, Eléna Kokabi, Chervin Hassel, Florence Tardy, Albertine Léon. Mycoplasma equirhinis, a disregarded player in equine respiratory disorders?. Connecting Equine health research, LABEO, Sep 2025, Caen, France. ⟨hal-05271741⟩
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Mélanie Colomb-Cotinat, Jean-Philippe Rasigade, Sylvie Nazaret, Marisa Haenni, Claire Harpet, et al.. Une approche One Health transdisciplinaire pour comprendre et prévenir l’antibiorésistance à l’échelle de la métropole de Lyon. 45ème Réunion Interdisciplinaire de Chimiothérapie Anti-infectieuse (RICAI), Europa Organisation, Dec 2025, Paris, France. ⟨anses-05422509⟩
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Nunzio Sarnino, Subhasish Basak, Lucie Collineau, Roswitha Merle. Transmission and mitigation of ESBL-producing E. coli from broiler production to the environment. SVEPM 2025, Mar 2025, Berlin, Germany. pp.Poster. ⟨anses-05022821⟩
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https://anses.hal.science/anses-05022821/file/Nunzio%20Sarnino%202025%20Transmission%20and%20mitigation%20of%20ESBL-producing%20E.%20coli%20from%20broiler%20production%20to%20the%20environment.pdf BibTex
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Chrun Tiphany, Katta Kirankumar, Renson Patricia, Pinsard Gaëtan, Mahé Sophie, et al.. DNA priming and MLV boosting against PRRSV improves the immunogenicity over a single dose of MLV in the presence of maternal antibodies. 2ème congrès du CIVVet, Apr 2025, Nantes, France. ⟨anses-05465984⟩
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Rachel Contarin, Séverine Murri, Antoine Drapeau, Tom Cayssials, Jean-Yves Madec, et al.. Plasmids in Staphylococcus aureus: key vectors of antibiotic resistance genes dissemination. 10th Symposium on Antimicrobial Resistance in Animals and the Environment (ARAE), Freie Universität Berlin, Jun 2025, Berlin, Germany. ⟨anses-05142726⟩
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Marisa Haenni. Apport des approches moléculaires dans la recherche et la surveillance des bactéries résistantes aux antibiotiques en médecine vétérinaire. Colloque International Francophone en Maladies Infectieuses Animales (CIFMIA 2025), Centre de Recherche Infectiologie Porcine et Avicole (CRIPA). Université de Montréal; Institut Agronomique et Vétérinaire Hassan II. Rabat, May 2025, Rabat, Morocco. ⟨anses-05084118⟩
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Wilfried Kpebesane Meda Mituorle, Mélanie Colomb-Cotinat, Lucie Collineau, Claire Harpet, Romane Lux, et al.. Hétérogénéité territoriale de la résistance aux antibiotiques : une étude écologique dans la métropole de Lyon. 45ème Réunion Interdisciplinaire de Chimiothérapie Anti-infectieuse (RICAI), Europa Organisation, Dec 2025, Paris, France. ⟨anses-05422518⟩
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Anaïs Bompard, Nathalie Jarrige, Séverine Barry, Géraldine Cazeau, Lucie Collineau, et al.. Tracking Escherichia coli, resistance genes, and virulence markers in dairy farm effluents. MedVetPathogens 2025, May 2025, Prato, Italy. pp.Communication orale. ⟨anses-05096730⟩
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Anna Bencsik. Nanoparticules, cerveau et règlementation. 41è Congrès de la Société Française d'Endocrinologie (SFE), Sep 2025, Lille, France. ⟨anses-05299315⟩
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Séverine Fontaine, Lucile Blouquy, Laetitia Caddoux, Benoit Barrès, Anne-Sophie Walker. Investigating genetic diversity and DMI resistance in French Cercospora beticola populations with both neutral and selected genetic markers. Journées de l’IIRB (International Institute of Sugar Beet Research) Study Group Meeting Pests and Diseases, Oct 2025, Paris, France. ⟨anses-05322028⟩
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Sandra Martínez-Álvarez, Pierre Châtre, Teresa Cardona-Cabrera, Pauline François, Ursula Höfle, et al.. Decoding the role of blaCPE-carrying plasmids on wings: A holistic view using the One Health approach. Congress of the European Society of Clinical Microbiology and Infectious Diseases (ESCMID Global), ECCMID, Apr 2025, Vienna, Austria. ⟨anses-05044951⟩
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Norman Daurelle, Anne Quillévéré-Hamard, Gaël Thébaud, Olivier Cotto. Estimation des nombres de reproduction de base et effectif de la sharka. 20. Rencontres de Virologie Végétale (RVV 2025), Jan 2025, Aussois, France. ⟨anses-04926055⟩
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Jean-Philippe Amat, Eric Morignat, Maïssane Chikh, David Ngwa-Mbot. Réactosurveillance en santé animale en France : Bilan de la thèse et perspectives. 11e Journée nationale de la référence professionnelle, Feb 2025, Maisons-Alfort, France. ⟨anses-04980293⟩
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Rachel Contarin, Marisa Haenni, Emilie Dordet-Frisoni. Mobile genetic elements in Staphylococcus aureus, vectors of antibiotic resistance. ESKAPE-2025, SCIREASE PVT LTD, Feb 2025, On-line event, United States. ⟨anses-04926430⟩
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Nunzio Sarnino, Subhasish Basak, Lucie Collineau, Roswitha Merle. Multi-pathway Quantitative Microbial Risk Assessment Model for Evaluating Human Exposure to ESBL-Producing E. coli from Broiler Production. 10th Symposium on Antimicrobial Resistance in Animals and the Environment (ARAE), Jun 2025, Berlin, Germany. ⟨anses-05337213⟩
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Chrun Tiphany, Katta Kirankumar, Renson Patricia, Pinsard Gaëtan, Mahé Sophie, et al.. DNA priming and MLV boosting against PRRSV improves the immunogenicity over a single dose of MLV in the presence of maternal antibodies. 16th European Symposium of Porcine Health Management (ESPHM), May 2025, Bern, Switzerland. ⟨anses-05466103⟩
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Benoit Barrès. Monitoring pesticide resistance in a changing world. Symposium International Plant-microbe biodiversity under global change, Jun 2025, Helsinki, Finland. ⟨anses-05151373⟩
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Christophe Plantamp, Neil Audsley, Barbara Egger, Bénédicte Gautier, Franziska Straubinger, et al.. Post approval monitoring of effectiveness of alternative methods in arthropod control. International and interdisciplinary meeting on non-target effects of biocontrolS, Oct 2025, Montpellier, France. ⟨anses-05353932⟩
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Book sections

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Benno ter Kuile, Vangelis Economou, Monika Dolejska, Marisa Haenni. Animal Movements and Food as Driving Factors for the Spread of Antimicrobial Resistance. Antimicrobial Resistance and Antibiotics Usage in Livestock, Springer Nature Switzerland, pp.63-88, 2025, ⟨10.1007/978-3-032-04598-0_4⟩. ⟨anses-05356601⟩
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Poster communications

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Sabine Delannoy, Corine Hoffer, Mai-Lan Tran, Jean-Yves Madec, Anne Brisabois, et al.. HT-qPCR suggests that Enterobacterales of French sheep and cow cheese rarely carry genes conferring resistances to critically important antibiotics for human medicine. 10th Symposium on Antimicrobial Resistance in Animals and the Environment, Jun 2025, Berlin, Germany. ⟨anses-05147896⟩
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Moutar Seydi, Lucie Collineau, Aida Diop, Sophie Granier, Alpha Diallo. Towards a national antimicrobial resistance surveillance system in food-producing animals in Senegal. 10th Symposium on Antimicrobial Resistance in Animals and the Environment (ARAE), Jun 2025, Berlin, Germany. ⟨anses-05337054⟩
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Sandra Martínez-Álvarez, Soraya Herrera-Espejo, Myriam Zarazaga, Jean-Yves Madec, Marisa Haenni, et al.. Genomic insights into CRISPR-Cas systems vs. virulence platforms and drug resistance among Escherichia coli isolates. Congress of the European Society of Clinical Microbiology and Infectious Diseases (ESCMID Global), Apr 2025, Vienna, Austria. ⟨10.13039/501100011033⟩. ⟨anses-05047149⟩
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https://anses.hal.science/anses-05047149/file/1_MARTINEZ_ALVAREZ_S_CRISPER_ESCMID_2025.pdf BibTex
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Anna Bencsik, Emmanuelle Chiffoleau. Optimiser l’usage des plastiques dans les laboratoires : Guide et fiches pratiques. 38e Congrès de l’AFH, Jun 2025, Grasse, France. . ⟨anses-05129559⟩
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https://anses.hal.science/anses-05129559/file/posterAFHGrasseJuin202510062025VF.pdf BibTex
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Meriem Maher Mtibaa, Sana Azaiez, Ahlem Mahjoub, Maha Dardouri, Meriem Souguir, et al.. Use of essential oils in managing ESBL E.coli colonization in broiler chicks: a nature-based solution to mitigate antimicrobial resistance. 10th Symposium on Antimicrobial Resistance in Animals and the Environment (ARAE), Jun 2025, Berlin, Germany. ⟨anses-05142776⟩
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Marisa Haenni, Nicolas Keck, Pauline François, Antoine Drapeau, Véronique Métayer, et al.. Resistance to extended-spectrum cephalosporins and carbapenems in wildlife in France. 14th International Meeting on Microbial Epidemiological Markers (XIVth IMMEM), Sep 2025, Porto, Portugal. ⟨anses-05270172⟩
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Alisia Chiadò Rana, Géraldine Cazeau, Stéphanie Bougeard, Kevin Bethune, Vincent Chochois, et al.. Bacterial and farm management risk factors in raw milk cheese production. Conference Society for Veterinary Epidemiology and Preventive Medicine (SVEPM), Mar 2025, Berlin, Germany. 86, 2018. ⟨anses-05151336⟩
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Florian Giudici, Estelle Saras, Marie-Noëlle Pons, Aïcha Hamieh, Agnese Lupo, et al.. Dissemination of antibiotic resistance in a constructed wetland. Antimicrobial Resistance in Animals & the Environment (ARAE), Jun 2025, Berlin, Germany. ⟨hal-05147716⟩
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Nibangue Lare, Charlotte Rüger, Julie Teresa Shapiro, Renaud Lailler, Jean-Philippe Amat, et al.. Unusual event algorithms for the surveillance of Salmonella of non-human origin. I3S 2025, Jun 2025, Saint Malo, France. . ⟨anses-05148159⟩
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Morgane Moustaghfir, Thibault Destanque, Pauline François, Pierre Châtre, Vanessa Louzier, et al.. Impact of amoxicillin/clavulanic acid on the gut microbiota composition of calves and on selection of antibiotic resistance genes. Federation of European Microbiological Societies (FEMS) Micro, Jul 2025, Milan, Italy. ⟨anses-05168524⟩
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Caroline Lebeaux, Emmanuel Bettler. Cross-kingdom resistance selection due to shared molecular targets: the case of accase inhibitors. International and interdisciplinary meeting on non-target effects of biocontrolS, Oct 2025, Montpellier, France. ⟨anses-05327347⟩
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Marisa Haenni, Laetitia Du Fraysseix, Pauline François, Antoine Drapeau, Pierre Châtre, et al.. Epidemiology of Klebsiella pneumoniae resistant to extended-spectrum cephalosporins and carbapenems in French companion animals. 14th International Meeting on Microbial Epidemiological Markers (XIVth IMMEM), Sep 2025, Porto, Portugal. ⟨anses-05270162⟩
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Séverine Murri, Pauline François, Jean-Yves Madec, Marisa Haenni. Isolation and characterization of a phage collection against Pseudomonas aeruginosa of veterinary origin. 10ème colloque Phages.fr, Nov 2025, Nancy, France. ⟨anses-05372631⟩
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Domenic Burger, Marianna Kashyrina, Amanda J Lewis, Francesco de Nuccio, Inayathulla Mohammed, et al.. 1.94 Å structure of synthetic α-synuclein fibrils seeding MSA neuropathology. Congrès Synuclein 2025, Apr 2025, Cambridge, United Kingdom. pp.Poster, ⟨10.1101/2024.07.01.601498⟩. ⟨hal-05027345⟩
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Sandra Martínez-Álvarez, Soraya Herrera-Espejo, Myriam Zarazaga, Jean-Yves Madec, Marisa Haenni, et al.. Distribution of virulence factors associated with Escherichia coli under the One Health concept. Congress of the European Society of Clinical Microbiology and Infectious Diseases (ESCMID Global), Apr 2025, Vienna, Austria. ⟨10.13039/501100011033⟩. ⟨anses-05047165⟩
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Nadia Jaidane, Wejdene Mansour, Yomna Ben Lamine, Sana Azaiez, Saoussen Oueslati, et al.. Colistin and carbapenem-resistant Klebsiella pneumoniae isolates from Tunisia: a decade of rising resistance (2012-2023). Congress of the European Society of Clinical Microbiology and Infectious Diseases (ESCMID Global), Apr 2025, Vienna, Austria. ⟨anses-05043256⟩
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Imen Hmidi, Meriem Souguir, Véronique Métayer, Antoine Drapeau, Pauline François, et al.. High proportions of Enterobacterales resistant to extended-spectrum cephalosporins in meat samples in Tunisia. 10th Symposium on Antimicrobial Resistance in Animals and the Environment (ARAE), Jun 2025, Berlin, Germany. ⟨anses-05142738⟩
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Claire Chauvin, Laurence Lacmago-Tchofor, Florine Kempf, Valentine Berthier, Mael Guinguene, et al.. Multi-Susceptibility: A Validated One Health Indicator of Antimicrobial Resistance. 10th Symposium on Antimicrobial Resistance in Animals and the Environment (ARAE), Jun 2025, Berlin, Germany. ⟨anses-05337306⟩
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Wejdene Mansour, Nadia Jaidane, Lamia Tilouche, Pauline François, Yomna Ben Lamine, et al.. First Report of OXA-204-Producing Pseudomonas guariconensis: Expanding the Horizon of Carbapenemase Dissemination. Congress of the European Society of Clinical Microbiology and Infectious Diseases (ESCMID Global), Apr 2025, Vienna, Austria. ⟨anses-05043237⟩
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Reports

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Jean-Noël Arsac, Vincent Béringue, Jean Carré, Christophe Dagot, Fabienne Petit, et al.. Avis de l'Anses relatif à une évaluation des risques sanitaires liés aux prions pour les consommateurs humains d’eau destinée à la consommation humaine en provenance de la prise d’eau superficielle de Sérignac-sur-Garonne. Saisine n°2024-AST-0062, Anses. 2025, 85 p. ⟨anses-05175557⟩
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Preprints, Working Papers, ...

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Johann Vulin, Fabien Chauveau, Chloé Dure, Muris Humo, Marco Valdebenito, et al.. Behavioural, biochemical and functional phenotyping of chronic exposure to chlordecone in mice. 2025. ⟨hal-05136870⟩
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Domenic Burger, Marianna Kashyrina, Amanda J Lewis, Francesco de Nuccio, Inayathulla Mohammed, et al.. 1.94 Å structure of synthetic α-synuclein fibrils seeding MSA neuropathology. 2025. ⟨hal-04728136v2⟩
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2024

Journal articles

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Alisia Chiado Rana, Géraldine Cazeau, Stéphanie Bougeard, Kevin Bethune, Vincent Chochois, et al.. A retrospective multivariate case-control approach to investigate factors influencing the sanitary quality of raw milk cheeses. Applied Food Research, 2024, 4 (2), pp.100617. ⟨10.1016/j.afres.2024.100617⟩. ⟨anses-04816878⟩
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Céline Dupuy, Célia Locquet, Christophe Brard, Laure Dommergues, Eva Faure, et al.. The French National Animal Health Surveillance Platform: an innovative, cross-sector collaboration to improve surveillance system e ciency in France and a tangible example of the One Health approach. Frontiers in Veterinary Science, 2024, 11, pp.1249925. ⟨10.3389/fvets.2024.1249925⟩. ⟨hal-04674181⟩
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Guillaume Girault, Luca Freddi, Maryne Jay, Ludivine Perrot, Alexandre Dremeau, et al.. Combination of in silico and molecular techniques for discrimination and virulence characterization of marine Brucella ceti and Brucella pinnipedialis. Frontiers in Microbiology, 2024, 15, ⟨10.3389/fmicb.2024.1437408⟩. ⟨anses-04723865⟩
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Sandra Martínez-Álvarez, Pierre Châtre, Pauline François, Idris Nasir Abdullahi, Carmen Simón, et al.. Unexpected role of pig nostrils in the clonal and plasmidic dissemination of extended-spectrum beta-lactamase-producing Escherichia coli at farm level. Ecotoxicology and Environmental Safety, 2024, 273, pp.116145. ⟨10.1016/j.ecoenv.2024.116145⟩. ⟨anses-04496957⟩
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A. Bencsik, Nathalie Accart. L’histologie face aux enjeux de l’intelligence artificielle. Revue Française d'Histotechnologie, 2024, 36 (1), pp.15-34. ⟨10.25830/afh.rfh.2024.36.1.15⟩. ⟨anses-04621743⟩
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Eric Morignat, Jean-Philippe Amat, Thomas Maignien, Thierry Baron, Laurent Méry. Bilan de la surveillance de l’ESB en France en 2023. Bulletin Epidémiologique, 2024, 103 (1), pp.1-4. ⟨anses-04829696⟩
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Pauline Lavainne, Charlotte Rüger, Jean-Philippe Amat, Viviane Hénaux, Eric Morignat, et al.. Estimation de la date présumée d’une mortalité massive aigue d’abeilles à partir de la masse d’un échantillon de cadavres d’abeilles adultes : étude pilote. Bulletin Epidémiologique, 2024, 101 (4), pp.1-9. ⟨anses-04598740⟩
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Margot Bärenstrauch, Alex Drouin, Sylvie Dauguet, Florence Lacoste, Isabelle de la Borde, et al.. Évaluation du Plan de Surveillance des Oléoprotéagineux (PSO) par la méthode OASIS. Bulletin Epidémiologique, 2024, 101 (Article 5), pp.1-5. ⟨anses-04689365⟩
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Lilian A Cloarec, Thomas Bacchetta, Maxime Bruto, Christophe Leboulanger, Vincent Grossi, et al.. Lineage-dependent partitioning of activities in chemoclines defines Woesearchaeota ecotypes in an extreme aquatic ecosystem. Microbiome, 2024, 12 (1), pp.249. ⟨10.1186/s40168-024-01956-0⟩. ⟨hal-04811121⟩
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Marwan Osman, Iman Yassine, Monzer Hamze, Hiba Al Mir, Anahita Ghorbani Tajani, et al.. Emergence of Extended-Spectrum Cephalosporin- and Colistin-Resistant Enterobacterales in Otherwise Healthy University Students. Microbial Drug Resistance, 2024, 30 (2), pp.101-107. ⟨10.1089/mdr.2023.0213⟩. ⟨anses-04456447⟩
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Sana Ncir, Marisa Haenni, Pierre Châtre, Antoine Drapeau, Pauline François, et al.. Occurrence and persistence of multidrug-resistant Enterobacterales isolated from urban, industrial and surface water in Monastir, Tunisia. Science of the Total Environment, 2024, 926, pp.171562. ⟨10.1016/j.scitotenv.2024.171562⟩. ⟨anses-04531709⟩
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Emmanuelle Chiffoleau, Tristan Ménard, A. Bencsik. Transition écologique dans les laboratoires d'histologie : pourquoi et comment aller vers un usage raisonné des plastiques. Revue Française d'Histotechnologie, 2024, 36 (1), pp.287-336. ⟨10.25830/afh.rfh.2024.36.1.287⟩. ⟨anses-04621700⟩
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Marisa Haenni, Séverine Murri, Caroline Lefrère, Jesper Larsen, Antoine Drapeau, et al.. Methicillin-resistant and methicillin-susceptible Staphylococcus aureus in French hedgehogs admitted to a wildlife health center. One Health, 2024, pp.100938. ⟨10.1016/j.onehlt.2024.100938⟩. ⟨anses-04799392⟩
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Claire Mottet, Laëtitia Caddoux, Séverine Fontaine, Christophe Plantamp, Chris Bass, et al.. Myzus persicae resistance to neonicotinoids—unravelling the contribution of differentmechanisms to phenotype. Pest Management Science, 2024, 80 (11), pp.5852-5863. ⟨10.1002/ps.8316⟩. ⟨anses-04680957⟩
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Manon Vastel, Corinne Pau-Roblot, Séverine Ferré, Véronique Tocqueville, Chloé Ambroset, et al.. Capsular Polysaccharide Production in Bacteria of the Mycoplasma Genus: A Huge Diversity of Pathways and Synthases for So‐Called Minimal Bacteria. Molecular Microbiology, 2024, 122 (6), pp.866-878. ⟨10.1111/mmi.15325⟩. ⟨hal-04762175⟩
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https://u-picardie.hal.science/hal-04762175/file/Vastel%202024%20Capsular%20Polysaccharide%20Production%20in%20Bacteria%20of%20the%20Mycoplasma%20Genus%20A%20Huge%20Diversity%20of%20Pathways%20and%20Synthases%20for%20So-Called%20Minimal%20Bacteria.pdf BibTex
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Florian Besnard, Ana Guintard, Cécile Grohs, Laurence Guzylack-Piriou, Margarita Cano, et al.. Massive detection of cryptic recessive genetic defects in dairy cattle mining millions of life histories. Genome Biology, 2024, 25 (1), pp.248. ⟨10.1186/s13059-024-03384-7⟩. ⟨hal-04714371⟩
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