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Noémie Pascault, Simon Roux, Joan Artigas, Stéphane Pesce, Julie Leloup, et al.. A high-throughput sequencing ecotoxicology study of freshwater bacterial communities and their responses to tebuconazole. FEMS Microbiology Ecology, Wiley-Blackwell, 2014, 90 (3), pp.25135322. 〈10.1111/1574-6941.12416〉. 〈hal-01110178〉
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Karine Frénal, Jean-Baptiste Marq, Damien Jacot, Valérie Polonais, Dominique Soldati-Favre, et al.. Plasticity between MyoC- and MyoA-Glideosomes: An Example of Functional Compensation in Toxoplasma gondii Invasion. PLoS Pathogens, Public Library of Science, 2014, 10 (11), pp.25393004. 〈10.1371/journal.ppat.1004504〉. 〈hal-01112526〉
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Céline Nourrisson, Julien Scanzi, Bruno Pereira, Christina Nkoudmongo, Ivan Wawrzyniak, et al.. Blastocystis Is Associated with Decrease of Fecal Microbiota Protective Bacteria: Comparative Analysis between Patients with Irritable Bowel Syndrome and Control Subjects. PLoS ONE, Public Library of Science, 2014, 9 (11), pp.25365580. 〈10.1371/journal.pone.0111868〉. 〈hal-01111985〉
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Karine Moche, Champlain Djieto Lordon, Marie Noel Melie Feyem, Zéphirin Tadu, Paul Alain Nana, et al.. AGRO-MORPHOLOGICAL CHARACTERIZATION OF TWO RICE VARIETIES FROM JAPAN; ORYSA SATIVA L. AND FOUR NERICAS VARIETIES IN AN AGRO-ECOLOGICAL ZONE OF THE TOWN OF YAOUNDE (CAMEROON); COMPARATIVE STUDY OF THEIR PERFORMANCES. International Journal of Current Research, T. Manikandan, 2014, 6 (11), pp.9941-9946. 〈hal-01091004〉
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Marion Roussel, Dominique Pontier, Mirdad Kazanji, Barthélémy Ngoubangoye, Renaud Mahieux, et al.. Quantifying transmission by stage of infection in the field: The example of SIV-1 and STLV-1 infecting mandrills.. American Journal of Primatology, Wiley, 2014, pp.0. 〈hal-01075462〉
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Guillaume Moulis, Haleh Bagheri, Laurent Sailler, Annie-Pierre Jonville-Bera, Emmanuelle Weber, et al.. Are adverse drug reaction patterns different between romiplostim and eltrombopag? 2009-2013 French PharmacoVigilance assessment.. European Journal of Internal Medicine, Elsevier, 2014, 25 (8), pp.777-80. 〈10.1016/j.ejim.2014.09.006〉. 〈hal-01078985〉
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Noémie Pascault, Valentin Loux, Sandra Derozier, Véronique Martin, Didier Debroas, et al.. Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems. Genetica, Springer Verlag, 2014, pp.25216965. 〈10.1007/s10709-014-9783-4〉. 〈hal-01110172〉
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Dupuy Christine, Clarisse Mallet, Katell Guizien, Hélène Montanié, Martine Bréret, et al.. Sequential resuspension of biofilm components (viruses, prokaryotes and protists) as measured by erodimetry experiments in the Brouage mudflat (French Atlantic coast). Journal of Sea Research, Elsevier, 2014, 92, pp.56-65. 〈10.1016/j.seares.2013.12.002〉. 〈hal-01104286〉
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Hélène Agogué, Clarisse Mallet, Francis Orvain, Margot De Crignis, Françoise Mornet, et al.. Bacterial dynamics in a microphytobenthic biofilm: A tidal mesocosm approach. Journal of Sea Research, Elsevier, 2014, Trophic significance of microbial biofilm in tidal flats, 92, pp.36 - 45. 〈10.1016/j.seares.2014.03.003〉. 〈hal-01086656〉
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Cyril Vidau, Johan Panek, Catherine Texier, David Georges Biron, Luc P Belzunces, et al.. Differential proteomic analysis of midguts from Nosema ceranae-infected honeybees reveals manipulation of key host functions.. Journal of Invertebrate Pathology, Elsevier, 2014, 121, pp.89-96. 〈10.1016/j.jip.2014.07.002〉. 〈hal-01071049〉
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Blanche Saint-Béat, Dupuy Christine, Hélène Agogué, Alexandre Carpentier, Julien Chalumeau, et al.. How does the resuspension of the biofilm alter the functioning of the benthos–pelagos coupled food web of a bare mudflat in Marennes-Oléron Bay (NE Atlantic)?. Journal of Sea Research, Elsevier, 2014, 92, pp.144-157. 〈http://www.sciencedirect.com/science/article/pii/S138511011400029X〉. 〈10.1016/j.seares.2014.02.003〉. 〈hal-01097877〉
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E Peyretaillade, D Boucher, N Parisot, C Gasc, R Butler, et al.. Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems. Heredity, Nature Publishing Group, 2014, pp.25182222. 〈10.1038/hdy.2014.78〉. 〈hal-01110134〉
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J. Sciauvaud, E. Rigal, J. Pascal, C. Nourrisson, P. Poirier, et al.. Transmission of infectious diseases from internationally adopted children to their adoptive families. Clinical Microbiology and Infection, Wiley, 2014, 20 (8), pp.24261464. 〈10.1111/1469-0691.12454〉. 〈hal-01112581〉
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Amparo Hidalgo-Galiana, Marta Monge, David Georges Biron, Francesc Canals, Ignacio Ribera, et al.. Reproducibility and Consistency of Proteomic Experiments on Natural Populations of a Non-Model Aquatic Insect. PLoS ONE, Public Library of Science, 2014, 9 (8), pp.25133588. 〈10.1371/journal.pone.0104734〉. 〈hal-01112552〉
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M Kaiser, D Biron, F Libersat. Abstracts: The 22nd Annual Meeting of the Israel Society for Neuroscience (ISFN) & The 2nd Bi national Italy-Israel Neuroscience Meeting. Journal of Molecular Neuroscience, Humana Press, 2014, 53 (S1), pp.53: S66. 〈10.1007/s12031-014-0252-4〉. 〈hal-01115258〉
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Marion Sabart, Benjamin Misson, Marlène Jobard, Gisèle Bronner, Florence Donnadieu-Bernard, et al.. Genetic diversity along the life cycle of the cyanobacterium Microcystis: highlight on the complexity of benthic and planktonic interactions. Applied and Environmental Microbiology, American Society for Microbiology, 2014, pp.1462-2920. 〈10.1111/1462-2920.12555〉. 〈hal-01112462〉
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G. Girault, N. Parisot, E. Peyretaillade, P. Peyret, S. Derzelle. Draft Genomes of Three Strains Representative of the Bacillus anthracis Diversity Found in France. Genome Announcements, American Society for Microbiology, 2014, 2 (4), pp.25081258. 〈10.1128/genomeA.00736-14〉. 〈hal-01110149〉
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Rebecca D. Oppenheim, Darren J. Creek, James I. Macrae, Katarzyna K. Modrzynska, Paco Pino, et al.. BCKDH: The Missing Link in Apicomplexan Mitochondrial Metabolism Is Required for Full Virulence of Toxoplasma gondii and Plasmodium berghei. PLoS Pathogens, Public Library of Science, 2014, 10 (7), pp.25032958. 〈10.1371/journal.ppat.1004263〉. 〈hal-01112521〉
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C. Nourrisson, Séverine Mathieu, J. Beytout, M. Cambon, P. Poirier. Lésion ostéolytique chez une patiente splénectomisée : à propos d’un cas d’échinococcose alvéolaire vertébrale. La Revue de Médecine Interne, Elsevier, 2014, 35 (6), pp.23890484. 〈10.1016/j.revmed.2013.06.004〉. 〈hal-01112550〉
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Michael Darmon, Christophe Clec'H, Christophe Adrie, Laurent Argaud, Bernard Allaouchiche, et al.. Acute Respiratory Distress Syndrome and Risk of AKI among Critically Ill Patients.. Clinical Journal of the American Society of Nephrology, American Society of Nephrology, 2014, epub ahead of print. 〈10.2215/CJN.08300813〉. 〈hal-01053792〉
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Mélanie Piroux, Chantal Thorin, Isabelle Farrera, Monique L’hostis, Bernard Vigues, et al.. A COMPARISON BETWEEN PLANT COMMUNITY COMPOSITION AND BOTANICAL SPECIESGATHERED BY HONEY BEES IN A CULTIVATED LANDSCAPE OF WESTERN FRANCE. International Journal of Current Research, T. Manikandan, 2014, Vol. 6, Issue, 05, pp.6699-6709. 〈hal-01114656〉
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F. Jaziri, N. Parisot, A. Abid, J. Denonfoux, C. Ribiere, et al.. PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification. Database Searcher, Meckler Corp., 2014, 2014, pp.24771669. 〈10.1093/database/bau036〉. 〈hal-01110161〉
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P. Poirier, D. Meloni, C. Nourrisson, I. Wawrzyniak, E. Viscogliosi, et al.. Molecular subtyping of Blastocystis spp. using a new rDNA marker from the mitochondria-like organelle genome.. Parasitology, Cambridge University Press (CUP), 2014, 141 (5), pp.670-81. 〈10.1017/S0031182013001996〉. 〈hal-01071887〉
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Damien Roux, Jean Reignier, Guillaume Thiery, Alexandre Boyer, Jan Hayon, et al.. Acquiring procedural skills in ICUs: a prospective multicenter study*.. Critical Care Medicine, Lippincott, Williams & Wilkins, 2014, 42 (4), pp.886-95. 〈10.1097/CCM.0000000000000049〉. 〈hal-01053800〉
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Michael Darmon, Matthias Pichon, Carole Schwebel, Stéphane Ruckly, Christophe Adrie, et al.. Influence of Early Dysnatraemia Correction on Survival of Critically Ill Patients.. Shock, Lippincott, Williams & Wilkins, 2014, epub ahead of print. 〈10.1097/SHK.0000000000000135〉. 〈hal-01053793〉
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Wanessa C Lima, Damien Balestrino, Christiane Forestier, Pierre Cosson. Two distinct sensing pathways allow recognition of Klebsiella pneumoniae by Dictyostelium amoebae.. Cellular Microbiology, Wiley, 2014, 16 (3), pp.311-23. 〈10.1111/cmi.12226〉. 〈hal-01053798〉
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Jean-François Brugère, Guillaume Borrel, Nadia Gaci, William Tottey, Paul W O’toole, et al.. Archaebiotics Proposed therapeutic use of archaea to prevent trimethylaminuria and cardiovascular disease. Gut microbes, Taylor & Francis, 2014, 5 (1), pp.5 - 10. 〈10.4161/gmic.26749〉. 〈hal-01612755〉
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Joan Artigas, N. Pascault, A. Bouchez, J. Chastaine, D. Debroas, et al.. Comparative sensitivity to the fungicide tebuconazole of biofilm and plankton microbial communities in freshwater ecosystems. Science of the Total Environment, Elsevier, 2014, 468-469, pp.326-336. 〈10.1016/j.scitotenv.2013.08.074〉. 〈hal-00995683v2〉
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Guillaume Borrel, Nicolas Parisot, Hugh Harris, Eric Peyretaillade, Nadia Gaci, et al.. Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.. BMC Genomics, BioMed Central, 2014, 15 (1), pp.679. 〈10.1186/1471-2164-15-679〉. 〈pasteur-01059404〉
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Paul Alain Nana, Zéphyrin Fokam, Pierre Ngassam, Gideon Aghaindum Ajeagah, Karine Moche, et al.. INFLUENCE OF IONIC CONTENTS ON THE STRATIFICATION OF ASTOMATIA AND HYSTEROCINETIDAE (CILIOPHORA, OLIGOHYMENOPHORA) ALONG THE DIGESTIVE TRACT OF ALMA EMINI (OLIGOCHAETE, GLOSSOSCOLECIDAE) FROM THE CENTER REGION OF CAMEROON. International Journal of Current Research, T. Manikandan, 2014, 6 (1), pp.4468-4474. 〈hal-01114626v2〉
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Zéphyrin Fokam, Paul Alain Nana, Pierre Ngassam, Geneviève Bricheux, Philippe Bouchard, et al.. Morphological description of four new species of Nyctotherus (Ciliophora: Nyctotheridae: Heterotri- chida), commensal ciliates of the digestive tract of a terrestrial Oligochaete (Megascolecidae) from the northwest region of Cameroon. Protistology, 2014, 8 (2), pp.62-70. 〈hal-01070952〉
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Dima El Safadi, Lobna Gaayeb, Dionigia Meloni, Amandine Cian, Philippe Poirier, et al.. Children of Senegal River Basin show the highest prevalence of Blastocystis sp. ever observed worldwide.. BMC Infectious Diseases, BioMed Central, 2014, 14 (1), pp.164. 〈10.1186/1471-2334-14-164〉. 〈inserm-00981310〉
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Francis Orvain, Margot De Crignis, Katell Guizien, Sébastien Lefebvre, Clarisse Mallet, et al.. Tidal and seasonal effects on the short-term temporal patterns of bacteria, microphytobenthos and exopolymers in natural intertidal biofilms (Brouage, France). Journal of Sea Research, Elsevier, 2014, 〈10.1016/j.seares.2014.02.018〉. 〈hal-01425772〉
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Clarisse Mallet, Hélène Agogué, Frédérique Bonnemoy, Katell Guizien, Francis Orvain, et al.. Structures of benthic prokaryotic communities and their hydrolytic enzyme activities resuspended from samples of intertidal mudflats: An experimental approach. Journal of Sea Research, Elsevier, 2014, Trophic significance of microbial biofilm in tidal flats, 92, pp.158-169. 〈10.1016/j.seares.2014.01.005〉. 〈hal-01356084〉
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Simon Roux, Jeremy Tournayre, Antoine Mahul, Didier Debroas, François Enault. Metavir 2: new tools for viral metagenome comparison and assembled virome analysis.. BMC Bioinformatics, BioMed Central, 2014, 15, pp.76. 〈10.1186/1471-2105-15-76〉. 〈hal-01017832〉
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Hélène Masclaux, Gilles Bourdier, Pascal Riera, Martin J. Kainz, Lionel Jouve, et al.. Resource partitioning among cladocerans in a littoral macrophyte zone: implications for the transfer of essential compounds. Aquatic Sciences - Research Across Boundaries, Springer Verlag, 2014, 76 (1), pp.73-81. 〈10.1007/s00027-013-0314-7〉. 〈hal-01255945〉
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Faouzi Jaziri, Nicolas Parisot, Anis Abid, Jérémie Denonfoux, C. Ribière, et al.. PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification. Database - The journal of Biological Databases and Curation, Oxford University Press, 2014, 2014, pp.bau036. 〈10.1093/database/bau036〉. 〈hal-01612766〉
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Johan Panek, Hicham El Alaoui, Anne Mone, Serge Urbach, Edith Demettre, et al.. Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae.. PLoS ONE, Public Library of Science, 2014, 9 (6), pp.e100791. 〈10.1371/journal.pone.0100791〉. 〈hal-01053924〉
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F. Rodrigues, G. Ferru, L. Berthon, N. Boubals, P. Guilbaud, et al.. New insights into the extraction of uranium(VI) by an N,N-dialkylamide. Molecular Physics, Taylor & Francis, 2014, 112, pp.1362-1374. 〈10.1080/00268976.2014.902139〉. 〈hal-01010443〉
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Nicolas Parisot, Adrian Pelin, Cyrielle Gasc, Valérie Polonais, Abdel Belkorchia, et al.. Microsporidian Genomes Harbor a Diverse Array of Transposable Elements that Demonstrate an Ancestry of Horizontal Exchange with Metazoans.. Genome Biol Evol, Oxford University Press, 2014, 6 (9), pp.2289-300. 〈10.1093/gbe/evu178〉. 〈hal-01071789〉
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Kévin Tocquard, Clément Lafon-Placette, Daniel Auguin, Beatriz Muries Bosch, Gisèle Bronner, et al.. In silico study of wall-associated kinase family reveals large-scale genomic expansion potentially connected with functional diversification in Populus. Tree Genetics and Genomes, Springer Verlag, 2014, 10 (5), pp.1135-1147. 〈10.1007/s11295-014-0748-7〉. 〈hal-01114446v2〉
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Faouzi Jaziri, Eric Peyretaillade, Mohieddine Missaoui, Nicolas Parisot, Sébastien Cipière, et al.. Large Scale Explorative Oligonucleotide Probe Selection for Thousands of Genetic Groups on a Computing Grid: Application to Phylogenetic Probe Design Using a Curated Small Subunit Ribosomal RNA Gene Database. The Scientific World Journal, Hindawi Publishing Corporation, 2014, 2014, pp.350487. 〈10.1155/2014/350487〉. 〈hal-01110169v2〉
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Mélanie Piroux, Olivier Lambert, Sophie Puyo, Isabelle Farrera, Chantal Thorin, et al.. Correlating the pollens gathered by Apis mellifera with the landscape features in western France. Applied Ecology and Environmental Research, ALOKI Ltd, 2014, 12 (2), pp.423-439. 〈hal-01506347〉
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Marina dos Santos Goncalves, Cédric Delattre, Damien Balestrino, Nicolas Charbonnel, Redouan Elboutachfaiti, et al.. Anti-biofilm activity: a function of Klebsiella pneumoniae capsular polysaccharide.. PLoS ONE, Public Library of Science, 2014, 9 (6), pp.e99995. 〈10.1371/journal.pone.0099995〉. 〈hal-01053796〉
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Guillaume Borrel, Nadia Gaci, Pierre Peyret, Paul W. O'Toole, Simonetta Gribaldo, et al.. Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette. Archaea, Hindawi Publishing Corporation, 2014, 2014, pp.1 - 11. 〈10.1155/2014/374146〉. 〈hal-01612761〉
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Julie Aufauvre, Barbara Misme-Aucouturier, Bernard Viguès, Catherine Texier, Frédéric Delbac, et al.. Transcriptome analyses of the honeybee response to Nosema ceranae and insecticides.. PLoS ONE, Public Library of Science, 2014, 9 (3), pp.e91686. 〈10.1371/journal.pone.0091686〉. 〈hal-01071042〉
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Communication dans un congrès

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Léo Chassiot, Emmanuel Chapron, Aude Beauger, Yannick Miras, Patrick Albéric, et al.. Impact of Environmental changes of lacustrine dynamics in the Lake Pavin over the 7,000 years (French Massif Central). 5th International MAAR Conference, Nov 2014, Queretaro, Mexico. 〈hal-01112194〉
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Yannick Miras, Aude Beauger, Marlène Lavrieux, Karen K. Serieyssol, Valérie Andrieu-Ponel, et al.. Tracking long-term human impacts on landscape, vegetal biodiversity and water quality in the Lake Aydat catchment (Auvergne, France) using pollen, NPP and diatom assemblages.. QuickLakeH2014, an international workshop on Lakes and Human interactions, Sep 2014, Ankara, Turkey. 〈hal-01112215〉
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Léo Chassiot, Emmanuel Chapron, Aude Beauger, Yannick Miras, Patrick Albéric, et al.. Lake Pavin paleolimnology and sedimentary records of regional Natural Hazards over the last 7000 years (French Massif Central). International Congress of Sedimentology, Aug 2014, Genève, Switzerland. 〈hal-01109426〉
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Chapitre d'ouvrage

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Lm Weiss, Frédéric Delbac, Jr Hayman, G Pan, Z Zhou. .The Microsporidian Polar Tube and Spore Wall in “Microsporidia: Pathogens of Opportunity. .Microsporidia: Pathogens of Opportunity, 2014. 〈hal-01114436〉
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Poster

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Marie-Paule Lofe, Marc Saudreau, Samuel Guyot, David Georges Biron. Effet de l'infection par la microsporidie Nosema Ceranae sur la régulation de la température par l'abeille domestique. 2ème Journées de la recherche apicole, Feb 2014, Paris, France. ITSAP, pp.19, 2014. 〈hal-01268585〉
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Thèse

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Mélanie Piroux. Ressources pollinifères et mellifères de l'Abeille domestique, Apis Mellifera, en paysage rural du nord-ouest de la France. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2014. Français. 〈NNT : 2014CLF22501〉. 〈tel-01135137〉
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Nicolas Parisot. Détermination de sondes oligonucléotidiques pour l'exploration à haut débit de la diversité taxonomique et fonctionnelle d'environnements complexes. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2014. Français. 〈NNT : 2014CLF22498〉. 〈tel-01086970〉
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Faouzi Jaziri. Conception et analyse des biopuces à ADN en environnements parallèles et distribués. Autre [cs.OH]. Université Blaise Pascal - Clermont-Ferrand II, 2014. Français. 〈NNT : 2014CLF22465〉. 〈tel-01276669〉
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Pierre Joly. Maize herbicides mixtures effects on soil microbial communities : microcosms studies. Agricultural sciences. Université Blaise Pascal - Clermont-Ferrand II, 2014. English. 〈NNT : 2014CLF22440〉. 〈tel-01020037〉
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