Publications HAL

2021

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Eric Bapteste, Philippe Gerard, Catherine Larose, Manuel Blouin, Fabrice Not, et al.. The Epistemic Revolution Induced by Microbiome Studies: An Interdisciplinary View. Biology, MDPI 2021, 10 (7), pp.651. ⟨10.3390/biology10070651⟩. ⟨hal-03290801⟩
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Concepcion Sanchez-Cid, Alexandre Guironnet, Laure Wiest, Emmanuelle Vulliet, Timothy M. Vogel. Gentamicin Adsorption onto Soil Particles Prevents Overall Short-Term Effects on the Soil Microbiome and Resistome. Antibiotics, MDPI, 2021, Special Issue The Distribution of Antibiotic Resistance in Terrestrial Ecosystems, 10 (2), pp.191. ⟨10.3390/antibiotics10020191⟩. ⟨hal-03200197⟩
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Lisa Stein, Martin Klotz, Kyle Lancaster, Graeme W. Nicol, Wei Qin, et al.. Comment on“A Critical Review on Nitrous Oxide Production by Ammonia-Oxidizing Archaea” by Lan Wu, Xueming Chen, Wei Wei, Yiwen Liu, Dongbo Wang, and Bing-Jie Ni. Environmental Science and Technology, American Chemical Society, 2021, 55 (1), pp.797-798. ⟨10.1021/acs.est.0c06792⟩. ⟨hal-03100724⟩
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Francois Tavernier, Riccardo Scorretti, Noël Burais, Hubert Razik, Jean-Yves Gaspard. Real-time numerical dosimetry of low-frequency electromagnetic fields by using multipoles. IEEE Transactions on Magnetics, Institute of Electrical and Electronics Engineers, In press, ⟨10.1109/TMAG.2021.3065554⟩. ⟨hal-03189650⟩
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Alexandre Guironnet, Concepcion Sanchez-Cid, Timothy M. Vogel, Laure Wiest, Emmanuelle Vulliet. Aminoglycosides analysis optimization using Ion pairing Liquid Chromatography coupled to tandem Mass Spectrometry and application on wastewater samples. Journal of Chromatography A, Elsevier, 2021, pp.462133. ⟨10.1016/j.chroma.2021.462133⟩. ⟨hal-03200052⟩
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2020

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Romie Tignat-Perrier, Aurélien Dommergue, Alban Thollot, Christoph Keuschnig, Olivier Magand, et al.. Author Correction: Global airborne microbial communities controlled by surrounding landscapes and wind conditions. Scientific Reports, Nature Publishing Group, 2020, 10 (1), ⟨10.1038/s41598-020-59138-5⟩. ⟨hal-03080244⟩
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Romie Tignat-Perrier, Aurélien Dommergue, Timothy Vogel, Catherine Larose. Microbial Ecology of the Planetary Boundary Layer. Atmosphere, MDPI 2020, 11 (12), pp.1296. ⟨10.3390/atmos11121296⟩. ⟨hal-03080036⟩
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Johanna Donhauser, Pascal Niklaus, Johannes Rousk, Catherine Larose, Beat Frey. Temperatures beyond the community optimum promote the dominance of heat-adapted, fast growing and stress resistant bacteria in alpine soils. Soil Biology and Biochemistry, Elsevier, 2020, 148, pp.107873. ⟨10.1016/j.soilbio.2020.107873⟩. ⟨hal-03080145⟩
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Chengsheng Zhu, Maximilian Miller, Nicholas Lusskin, Benoît Bergk Pinto, Lorrie Maccario, et al.. Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds. MicrobiologyOpen, Wiley, 2020, 9 (9), ⟨10.1002/mbo3.1100⟩. ⟨hal-03080130⟩
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Pierfrancesco Nardi, Hendrikus Laanbroek, Graeme W. Nicol, Giancarlo Renella, Massimiliano Cardinale, et al.. Biological nitrification inhibition in the rhizosphere: determining interactions and impact on microbially mediated processes and potential applications. FEMS Microbiology Reviews, Wiley-Blackwell, 2020, 44 (6), pp.874-908. ⟨10.1093/femsre/fuaa037⟩. ⟨hal-03100712⟩
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Christoph Keuschnig, Markus Gorfer, Guofen Li, Daniel Mania, Åsa Frostegård, et al.. NO and N 2 O transformations of diverse fungi in hypoxia: evidence for anaerobic respiration only in Fusarium strains. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2020, 22 (6), pp.2182-2195. ⟨10.1111/1462-2920.14980⟩. ⟨hal-03080174⟩
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Alexandra Holland, Benoît Bergk Pinto, Rose Layton, Christopher Williamson, Alexandre Anesio, et al.. Over Winter Microbial Processes in a Svalbard Snow Pack: An Experimental Approach. Frontiers in Microbiology, Frontiers Media, 2020, 11, ⟨10.3389/fmicb.2020.01029⟩. ⟨hal-03080265⟩
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Damien Voyer, Sergio Corridore, Annabelle Collin, Riccardo Scorretti, Clair Poignard. Numerical modeling of floating potentials in electrokinetic problems using an asymptotic method. IEEE Transactions on Magnetics, Institute of Electrical and Electronics Engineers, 2020, ⟨10.1109/TMAG.2019.2951942⟩. ⟨hal-02467851⟩
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Laurent Krähenbühl, Riccardo Scorretti, Arnaud Bréard, Christian Vollaire, Jean Michel Guichon, et al.. Large Surface LC-resonant Metamaterials: from Circuit Model to Modal Theory and Efficient Numerical Methods. IEEE Transactions on Magnetics, Institute of Electrical and Electronics Engineers, 2020, 56 (2), pp.6701504. ⟨10.1109/TMAG.2019.2952541⟩. ⟨hal-02194948⟩
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Lorenza Pacini, Laetitia Bourgeat, Anatoli Serghei, Claire Lesieur. Analysis of Nanoconfined Protein Dielectric Signals Using Charged Amino Acid Network Models. Australian Journal of Chemistry, CSIRO Publishing, 2020, 73 (8), pp.803. ⟨10.1071/CH19502⟩. ⟨hal-03014334⟩
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A. Aigle, C. Gubry‐rangin, C. Thion, K. Estera‐molina, H. Richmond, et al.. Experimental testing of hypotheses for temperature‐ and pH ‐based niche specialization of ammonia oxidizing archaea and bacteria. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2020, 22 (9), pp.4032-4045. ⟨10.1111/1462-2920.15192⟩. ⟨hal-03100729⟩
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Lorenza Pacini, Laetitia Bourgeat, Anatoli Serghei, Claire Lesieur. Analysis of Nanoconfined Protein Dielectric Signals Using Charged Amino Acid Network Models. Australian Journal of Chemistry, CSIRO Publishing, 2020, 73 (8), pp.803. ⟨10.1071/CH19502⟩. ⟨hal-03060094⟩
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Romie Tignat-Perrier, Aurélien Dommergue, Alban Thollot, Olivier Magand, Timothy Vogel, et al.. Microbial functional signature in the atmospheric boundary layer. Biogeosciences, European Geosciences Union, 2020, 17 (23), pp.6081-6095. ⟨10.5194/bg-17-6081-2020⟩. ⟨hal-03079607⟩
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Nora Els, Marion Greilinger, Michael Reisecker, Romie Tignat-Perrier, Kathrin Baumann-Stanzer, et al.. Comparison of Bacterial and Fungal Composition and Their Chemical Interaction in Free Tropospheric Air and Snow Over an Entire Winter Season at Mount Sonnblick, Austria. Frontiers in Microbiology, Frontiers Media, 2020, 11, pp.980. ⟨10.3389/fmicb.2020.00980⟩. ⟨hal-03080180⟩
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2019

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Lorrie Maccario, Shelly Carpenter, Jody Deming, Timothy Vogel, Catherine Larose. Sources and selection of snow-specific microbial communities in a Greenlandic sea ice snow cover. Scientific Reports, Nature Publishing Group, 2019, 9 (1), ⟨10.1038/s41598-019-38744-y⟩. ⟨hal-02122082⟩
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Romie Tignat-Perrier, Aurélien Dommergue, Alban Thollot, Christoph Keuschnig, Olivier Magand, et al.. Global airborne microbial communities controlled by surrounding landscapes and wind conditions. Scientific Reports, Nature Publishing Group, 2019, 9 (1), ⟨10.1038/s41598-019-51073-4⟩. ⟨hal-02415112⟩
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Nora Els, Catherine Larose, Kathrin Baumann-Stanzer, Romie Tignat-Perrier, Christoph Keuschnig, et al.. Microbial composition in seasonal time series of free tropospheric air and precipitation reveals community separation. Aerobiologia, Springer Verlag, 2019, 35 (4), pp.671-701. ⟨10.1007/s10453-019-09606-x⟩. ⟨hal-02415098⟩
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Laëtitia Bourgeat, Anatoli Serghei, Claire Lesieur. Experimental protein Molecular Dynamics: Broadband Dielectric Spectroscopy coupled with nanoconfinement. Scientific Reports, Nature Publishing Group, 2019, ⟨10.1038/s41598-019-54562-8⟩. ⟨hal-02404528⟩
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James Prosser, Linda Hink, Cécile Gubry‐rangin, Graeme W. Nicol. Nitrous oxide production by ammonia oxidizers: Physiological diversity, niche differentiation and potential mitigation strategies. Global Change Biology, Wiley, 2019, ⟨10.1111/gcb.14877⟩. ⟨hal-02416635⟩
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Benoît Bergk Pinto, Lorrie Maccario, Aurélien Dommergue, Timothy Vogel, Catherine Larose. Do Organic Substrates Drive Microbial Community Interactions in Arctic Snow?. Frontiers in Microbiology, Frontiers Media, 2019, 10, ⟨10.3389/fmicb.2019.02492⟩. ⟨hal-02415106⟩
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Carolina Hoyos-Hernandez, Christelle Courbert, Caroline Simonucci, Sebastien David, Timothy Vogel, et al.. Community structure and functional genes in radionuclide contaminated soils in Chernobyl and Fukushima. FEMS Microbiology Letters, Wiley-Blackwell, 2019, ⟨10.1093/femsle/fnz180⟩. ⟨hal-02415116⟩
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Philipp Baloh, Nora Els, Róbert Dávid, Catherine Larose, Karin Whitmore, et al.. Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria. Frontiers in Microbiology, Frontiers Media, 2019, 10, ⟨10.3389/fmicb.2019.02278⟩. ⟨hal-02415149⟩
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Graeme W. Nicol, Linda Hink, Cécile Gubry-Rangin, James Prosser, Laura Lehtovirta-Morley. Genome Sequence of “ Candidatus Nitrosocosmicus franklandus” C13, a Terrestrial Ammonia-Oxidizing Archaeon. Microbiology Resource Announcements, American Society for Microbiology, 2019, 8 (40), ⟨10.1128/MRA.00435-19⟩. ⟨hal-02416637⟩
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Maria Longhitano, Fabien Sixdenier, Riccardo Scorretti, Laurent Krähenbühl, Christophe Geuzaine. Temperature-Dependent Hysteresis Model for Soft Magnetic Materials. COMPEL: The International Journal for Computation and Mathematics in Electrical and Electronic Engineering, Emerald, 2019, 38 (5), pp.1595-1613. ⟨10.1108/COMPEL-12-2018-0535⟩. ⟨hal-02122582⟩
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Quentin Avenas, Julien Moreau, Marion Costella, Arbi Maalaoui, Abdelkader Souifi, et al.. Performance improvement of plasmonic sensors using a combination of AC electrokinetic effects for (bio)target capture. Electrophoresis, Wiley-VCH Verlag, 2019, 40, pp.1426 - 1435. ⟨10.1002/elps.201800436⟩. ⟨hal-02073261⟩
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Aria Gheeraert, Lorenza Pacini, Victor Batista, Laurent Vuillon, Claire Lesieur, et al.. Exploring Allosteric Pathways of a V-Type Enzyme with Dynamical Perturbation Networks. Journal of Physical Chemistry B, American Chemical Society, 2019, 123 (16), pp.3452-3461. ⟨10.1021/acs.jpcb.9b01294⟩. ⟨hal-02134286⟩
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Nora Els, Kathrin Baumann‐stanzer, Catherine Larose, Timothy Vogel, Birgit Sattler. Beyond the planetary boundary layer: Bacterial and fungal vertical biogeography at Mount Sonnblick, Austria. Geo: Geography and Environment, Wiley, 2019, 6 (1), pp.e00069. ⟨10.1002/geo2.69⟩. ⟨hal-02122074⟩
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Marion Costella, Quentin Avenas, Marie Frénéa-Robin, Julien Marchalot, Pascal Bevilacqua, et al.. Dielectrophoretic cell trapping for improved surface plasmon resonance imaging sensing. Electrophoresis, Wiley-VCH Verlag, 2019, 40, pp.1417 - 1425. ⟨10.1002/elps.201800439⟩. ⟨hal-02074721⟩
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Aurélien Dommergue, Pierre Amato, Romie Tignat-Perrier, Olivier Magand, Alban Thollot, et al.. Methods to Investigate the Global Atmospheric Microbiome. Frontiers in Microbiology, Frontiers Media, 2019, 10, pp.243. ⟨10.3389/fmicb.2019.00243⟩. ⟨hal-02122072⟩
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Jonathan Cottet, Alexandre Kehren, Soufian Lasli, Harald van Lintel, François Buret, et al.. Dielectrophoresis-assisted creation of cell aggregates under flow conditions using planar electrodes. Electrophoresis, Wiley-VCH Verlag, 2019, ⟨10.1002/elps.201800435⟩. ⟨hal-02052550⟩
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Jonathan Cottet, Olivier Fabrègue, Charles Berger, François Buret, Philippe Renaud, et al.. MyDEP: a new computational tool for dielectric modeling of particles and cells. Biophysical Journal, Biophysical Society, 2019, 116 (1), pp.12-18. ⟨10.1016/j.bpj.2018.11.021⟩. ⟨hal-01944869⟩
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Jonathan Cottet, Alexandre Kehren, Harald van Lintel, François Buret, Marie Frénéa-Robin, et al.. How to improve the sensitivity of coplanar electrodes and micro channel design in electrical impedance flow cytometry: a study. Microfluidics and Nanofluidics, Springer Verlag, 2019, 23 (1), ⟨10.1007/s10404-018-2178-6⟩. ⟨hal-01970310⟩
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Feixiong Chen, Naoufel Haddour, Marie Frénéa-Robin, Yann Chevolot, Virginie Monnier. Electroactive magnetic nanoparticles under magnetic attraction on a microchip electrochemical device. Journal of Magnetism and Magnetic Materials, Elsevier, 2019, 475, pp.345-351. ⟨10.1016/j.jmmm.2018.11.091⟩. ⟨hal-01944845⟩
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Alice Gubernati, Fabio Freschi, Luca Giaccone, Riccardo Scorretti, Laurent Seppecher, et al.. Modeling of Exposure to Low Frequency Electromagnetic Fields of Workers in Arbitrary Posture. IEEE Transactions on Magnetics, Institute of Electrical and Electronics Engineers, 2019, 56 (2), ⟨10.1109/TMAG.2019.2949391⟩. ⟨hal-02415266⟩
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2018

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Charles Chatard, Andrei Sabac, Laura Moreno-Velasquez, Anne Meiller, Stéphane Marinesco. Minimally Invasive Microelectrode Biosensors Based on Platinized Carbon Fibers for in Vivo Brain Monitoring. ACS Central Science, ACS Publications, 2018, 4 (12), pp.1751-1760. ⟨10.1021/acscentsci.8b00797⟩. ⟨hal-01996690⟩
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Caroline Abreu, Yannig Nédellec, Olivier Ondel, François Buret, Serge Cosnier, et al.. Towards eco-friendly power sources: In series connected glucose biofuel cells power a disposable ovulation test. Sensors and Actuators B: Chemical, Elsevier, 2018, 277, pp.360 - 364. ⟨10.1016/j.snb.2018.09.033⟩. ⟨hal-01885614⟩
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Nogaye Niang, Sandrine Demanèche, Ibrahima Ndoye, Elisabeth Navarro, Saliou Fall. Genetic diversity of rhizobia and plant growth promoting rhizobacteria of soil under the influence of Piliostigma reticulatum (DC.) Hochst and their impact on shrub growth. African Journal of Agricultural Research, Academic Journals, 2018, ⟨10.5897/AJAR2018.13494⟩. ⟨ird-02497476⟩
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S. Vasileiadis, E. Puglisi, S. Papadopoulou, G. Pertile, N. Suciu, et al.. Blame It on the Metabolite: 3,5-Dichloroaniline Rather than the Parent Compound Is Responsible for the Decreasing Diversity and Function of Soil Microorganisms. Applied and Environmental Microbiology, American Society for Microbiology, 2018, 84 (22), ⟨10.1128/AEM.01536-18⟩. ⟨hal-01978387⟩
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David Royet, Nora Dempsey, Pascal Simonet, Marie Frénéa-Robin. A new magnetic cell fishing approach based on hybridization chain reaction: HCR-MISH. Sensors and Actuators B: Chemical, Elsevier, 2018, 273, pp.126 - 132. ⟨10.1016/j.snb.2018.05.150⟩. ⟨hal-01921213⟩
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Rodrigo Dorantes-Gilardi, Laëtitia Bourgeat, Lorenza Pacini, Laurent Vuillon, Claire Lesieur. In proteins, the structural responses of a position to mutation rely on the Goldilocks principle: not too many links, not too few. Physical Chemistry Chemical Physics, Royal Society of Chemistry, 2018, 20 (39), pp.25399 - 25410. ⟨10.1039/C8CP04530E⟩. ⟨hal-01921198⟩
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Alexis Fouineau, Marie-Ange Raulet, Bruno Lefebvre, Noël Burais, Fabien Sixdenier. Semi-Analytical Methods for Calculation of Leakage Inductance and Frequency-Dependent Resistance of Windings in Transformers. IEEE Transactions on Magnetics, Institute of Electrical and Electronics Engineers, 2018, 54 (10), pp.8400510. ⟨10.1109/TMAG.2018.2858743⟩. ⟨hal-01859899⟩
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D.G. Joakim Larsson, Antoine Andremont, Johan Bengtsson-Palme, Kristian Brandt, Ana Maria de Roda Husman, et al.. Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance. Environment International, Elsevier, 2018, 117, pp.132 - 138. ⟨10.1016/j.envint.2018.04.041⟩. ⟨hal-01923170⟩
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Caroline Abreu, Yannig Nédellec, Olivier Ondel, François Buret, Serge Cosnier, et al.. Glucose oxidase bioanodes for glucose conversion and H 2 O 2 production for horseradish peroxidase biocathodes in a flow through glucose biofuel cell design. Journal of Power Sources, Elsevier, 2018, 392, pp.176-180. ⟨10.1016/j.jpowsour.2018.04.104⟩. ⟨hal-02007133⟩
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Riccardo Scorretti. Travailleurs et champs électromagnétiques industriels : Exposition des travailleurs aux champs électromagnétiques industriels. Les cahiers de la Recherche. Santé, Environnement, Travail, ANSES, 2018, La santé au travail, pp.13-14. ⟨anses-01853636⟩
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Xinda Lu, Graeme W. Nicol, Josh Neufeld. Differential responses of soil ammonia-oxidizing archaea and bacteria to temperature and depth under two different land uses. Soil Biology and Biochemistry, Elsevier, 2018, 120, pp.272-282. ⟨10.1016/j.soilbio.2018.02.017⟩. ⟨hal-01968440⟩
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Yong-Guan Zhu, Michael Gillings, Pascal Simonet, Dov Stekel, Steven Banwart, et al.. Human dissemination of genes and microorganisms in Earth's Critical Zone. Global Change Biology, Wiley, 2018, 24 (4), pp.1488 - 1499. ⟨10.1111/gcb.14003⟩. ⟨hal-01923179⟩
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Feixiong Chen, Naoufel Haddour, Marie Frenea-Robin, Yann Chevolot, Virginie Monnier. Polyamidoamine Dendrimers as Crosslinkers for Efficient Electron Transfer between Redox Probes onto Magnetic Nanoparticles. ChemistrySelect, Wiley, 2018, 3 (10), pp.2823 - 2829. ⟨10.1002/slct.201703135⟩. ⟨hal-01849824⟩
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Damien Voyer, Aude Silve, Lluis M. Mir, Riccardo Scorretti, Clair Poignard. Dynamical modeling of tissue electroporation. Bioelectrochemistry, Elsevier, 2018, 119, pp.98 - 110. ⟨10.1016/j.bioelechem.2017.08.007⟩. ⟨hal-01598846⟩
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Christina Hazard, David Johnson. Does genotypic and species diversity of mycorrhizal plants and fungi affect ecosystem function?. New Phytologist, Wiley, 2018, 7 p. ⟨10.1111/nph.15010⟩. ⟨hal-01702234⟩
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Irini Djeran-Maigre, Philippe Dubujet, Timothy M. Vogel. Variation over time of excavated soil properties treated with surfactants. Environmental Earth Sciences, Springer, 2018, 77 (67), 12 p. ⟨10.1007/s12665-018-7230-z⟩. ⟨hal-01702264⟩
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Linda Hink, Cécile Gubry-Rangin, Graeme W. Nicol, James Prosser. The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions. ISME Journal, Nature Publishing Group, 2018, 12, pp.1084-1093. ⟨10.1038/s41396-017-0025-5⟩. ⟨hal-01970359⟩
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Rony Ibrahim, Damien Voyer, Mohamad El Zoghbi, Julien Huillery, Arnaud Bréard, et al.. Novel Design for a Rectenna to Collect Pulse Waves at 2.4 GHz. IEEE Transactions on Microwave Theory and Techniques, Institute of Electrical and Electronics Engineers, 2018, 66 (1), pp.357 - 365. ⟨10.1109/TMTT.2017.2749579⟩. ⟨hal-01614146⟩
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Yaying Li, Stephen Chapman, Graeme W. Nicol, Huaiying Yao. Nitrification and nitrifiers in acidic soils. Soil Biology and Biochemistry, Elsevier, 2018, 116, pp.290-301. ⟨10.1016/j.soilbio.2017.10.023⟩. ⟨hal-01970357⟩
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Benoit Brazey, Jonathan Cottet, A. Bolopion, H. van Lintel, P. Renaud, et al.. Impedance-based real-time position sensor for lab-on-a-chip devices. Lab on a Chip, Royal Society of Chemistry, 2018, 18 (5), pp.818 - 831. ⟨10.1039/C7LC01344B⟩. ⟨hal-01884119⟩
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2017

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Linda Hink, Pawel Lycus, Cécile Gubry-Rangin, Asa Frostegard, Graeme W. Nicol, et al.. Kinetics of NH3-oxidation, NO-turnover, N2O-production and electron flow during oxygen depletion in model bacterial and archaeal ammonia oxidisers. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2017, 19 (12), pp.4882-4896. ⟨10.1111/1462-2920.13914⟩. ⟨hal-01970339⟩
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Linda Hink, Graeme W. Nicol, James Prosser. Archaea produce lower yields of N 2 O than bacteria during aerobic ammonia oxidation in soil. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2017, 19 (12), pp.4829-4837. ⟨10.1111/1462-2920.13282⟩. ⟨hal-01985976⟩
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Craig Herbold, Laura Lehtovirta-Morley, Man-Young Jung, Nico Jehmlich, Bela Hausmann, et al.. Ammonia-oxidising archaea living at low pH: Insights from comparative genomics. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2017, 19 (12), pp.4939-4952. ⟨10.1111/1462-2920.13971⟩. ⟨hal-01970311⟩
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Elisa Cp Catão, Cécile Thion, R.H. Krüger, James Prosser. Ammonia oxidisers in a non-nitrifying Brazilian savanna soil. FEMS Microbiology Ecology, Wiley-Blackwell, 2017, 93 (11), pp.fix122. ⟨10.1093/femsec/fix122⟩. ⟨hal-01970332⟩
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Jonathan Cottet, Clarisse Vaillier, François Buret, Marie Frenea-Robin, Philippe Renaud. A reproducible method for μ m precision alignment of PDMS microchannels with on-chip electrodes using a mask aligner. Biomicrofluidics, American Institute of Physics, 2017, 11 (6), ⟨10.1063/1.5001145⟩. ⟨hal-01884118⟩
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Heiko Nacke, Ingo Schöning, Malte Schindler, Marion Schrumpf, Rolf Daniel, et al.. Links between seawater flooding, soil ammonia oxidiser communities and their response to changes in salinity. FEMS Microbiology Ecology, Wiley-Blackwell, 2017, 93 (11), ⟨10.1093/femsec/fix144⟩. ⟨hal-01985981⟩
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Christina Hazard, Laura Kruitbos, Hazel Davidson, Fatou Mbow, Andy Taylor, et al.. Strain Identity of the Ectomycorrhizal Fungus Laccaria bicolor Is More Important than Richness in Regulating Plant and Fungal Performance under Nutrient Rich Conditions. Frontiers in Microbiology, Frontiers Media, 2017, 8, pp.1874. ⟨10.3389/fmicb.2017.01874⟩. ⟨hal-01970327⟩
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Yong-Guan Zhu, Michael Gillings, Pascal Simonet, Dov Stekel, Steve Banwart, et al.. Microbial mass movements. Science, American Association for the Advancement of Science, 2017, 357 (6356), pp.1099 - 1100. ⟨10.1126/science.aao3007⟩. ⟨hal-01629531⟩
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Tue Kjærgaard Nielsen, Morten Rasmussen, Sandrine Demanèche, Sébastien Cecillon, Timothy Vogel, et al.. Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2017, 9 (9), pp.2477-2490. ⟨10.1093/gbe/evx185⟩. ⟨hal-01970342⟩
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Jean-Michel Hily, Sandrine Demanèche, Nils Poulicard, Mélanie Tannières, Samia Djennane, et al.. Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnology Journal, Wiley, 2017, 16 (1), pp.208-220. ⟨10.1111/pbi.12761⟩. ⟨hal-01588179⟩
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Albert Pereira, Fabien Sixdenier, Marie-Ange Raulet, Bruno Lefebvre, Noël Burais. Comparison Between Numerical and Analytical Methods of AC Resistance Evaluation for Medium-Frequency Transformers: Validation on a Prototype and Thermal Impact Analysis. Canadian Journal of Electrical and Computer Engineering, Institute of Electrical and Electronics Engineers, 2017, 40 (2), pp.101 - 109. ⟨10.1109/CJECE.2016.2594118⟩. ⟨hal-01900682⟩
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Caroline Abreu, Yannig Nedellec, Andrew J. Gross, Olivier Ondel, François Buret, et al.. Assembly and Stacking of Flow-through Enzymatic Bioelectrodes for High Power Glucose Fuel Cells. ACS Applied Materials & Interfaces, Washington, D.C. : American Chemical Society, 2017, 9 (28), pp.23836 - 23842. ⟨10.1021/acsami.7b06717⟩. ⟨hal-01617973⟩
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Andrew Gross, Xiaohong Chen, Fabien Giroud, Caroline Abreu, Alan Le Goff, et al.. A High Power Buckypaper Biofuel Cell: Exploiting 1,10-Phenanthroline-5,6-dione with FAD-Dependent Dehydrogenase for Catalytically-Powerful Glucose Oxidation. ACS Catalysis, American Chemical Society, 2017, 7 (7), pp.4408 - 4416. ⟨10.1021/acscatal.7b00738⟩. ⟨hal-01616374⟩
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Agathe Paitier, Alexiane Godain, Delina Lyon, Naoufel Haddour, Timothy M. Vogel, et al.. Microbial fuel cell anodic microbial population dynamics during MFC start-up. Biosensors and Bioelectronics, Elsevier, 2017, 92, pp.357 - 363. ⟨10.1016/j.bios.2016.10.096⟩. ⟨hal-01588970⟩
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Julien Pezard, Véronique Soulière, Mihai Lazar, Naoufel Haddour, François Buret, et al.. Realization and Characterization of Carbonic Layers on 4H-SiC for Electrochemical Detections. Materials Science Forum, Trans Tech Publications Inc., 2017, 897, pp.739 - 742. ⟨10.4028/www.scientific.net/MSF.897.739⟩. ⟨hal-01644735⟩
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Felix J Elling, Martin Könneke, Graeme W Nicol, Michaela Stieglmeier, Barbara Bayer, et al.. Chemotaxonomic characterisation of the thaumarchaeal lipidome. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2017, 19, pp.2681-2700. ⟨10.1111/1462-2920.13759⟩. ⟨hal-01970306⟩
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Juliana B. Müller, Débora T. Ramos, Catherine Larose, Marilda Fernandes, Helen S.C. Lazzarin, et al.. Combined iron and sulfate reduction biostimulation as a novel approach to enhance BTEX and PAH source-zone biodegradation in biodiesel blend-contaminated groundwater. Journal of Hazardous Materials, Elsevier, 2017, 326, pp.229 - 236. ⟨10.1016/j.jhazmat.2016.12.005⟩. ⟨hal-01588965⟩
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Cécile Gubry-Rangin, Breda Novotnik, Ines Mandič-Mulec, Graeme W. Nicol, James I. Prosser. Temperature responses of soil ammonia-oxidising archaea depend on pH. Soil Biology and Biochemistry, Elsevier, 2017, 106, pp.61 - 68. ⟨10.1016/j.soilbio.2016.12.007⟩. ⟨hal-01588948⟩
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Lin Wang, Brice Gautier, Andrei Sabac, Georges Bremond. Investigation of tip-depletion-induced fail in scanning capacitance microscopy for the determination of carrier type. Ultramicroscopy, Elsevier, 2017, 174, pp.46-49. ⟨10.1016/j.ultramic.2016.12.016⟩. ⟨hal-02073070⟩
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Zhao Li, François Tavernier, Arnaud Bréard, Laurent Krähenbühl, Damien Voyer, et al.. Error analysis for near-field EMC problems based on multipolar expansion approach. IEEE Transactions on Magnetics, Institute of Electrical and Electronics Engineers, 2017, 53 (6), pp.1 - 4. ⟨10.1109/TMAG.2017.2664985⟩. ⟨hal-01496540⟩
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Arnaud Bréard, Olivier Chadebec, Laurent Krähenbühl, Carlos Sartori, Christian Vollaire, et al.. Overview on the Evolution of Near Magnetic Field Coupling Prediction Using Equivalent Multipole Spherical Harmonic Sources. IEEE Transactions on Electromagnetic Compatibility, Institute of Electrical and Electronics Engineers, 2017, 59 (2), pp.584-592. ⟨10.1109/TEMC.2016.2638960⟩. ⟨hal-01432166⟩
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Franciele Fedrizzi, Débora T. Ramos, Helen S. C. Lazzarin, Catherine Larose, Timothy M. Vogel, et al.. A Modified Approach for in Situ Chemical Oxidation Coupled to Biodegradation Enhances Light Nonaqueous Phase Liquid Source-Zone Remediation. Environmental Science and Technology, American Chemical Society, 2017, 51 (1), pp.463 - 472. ⟨10.1021/acs.est.6b03604⟩. ⟨hal-01588980⟩
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Sandrine Demanèche, Leif Schauser, Lorna Dawson, Laure Franqueville, Pascal Simonet. Microbial soil community analyses for forensic science: Application to a blind test. Forensic Science International, Elsevier, 2017, 270, pp.153 - 158. ⟨10.1016/j.forsciint.2016.12.004⟩. ⟨hal-01588951⟩
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Habteab Habtom, Sandrine Demanèche, Lorna Dawson, Chen Azulay, Ofra Matan, et al.. Soil characterisation by bacterial community analysis for forensic applications: A quantitative comparison of environmental technologies. Forensic Science International: Genetics , Elsevier, 2017, 26, pp.21 - 29. ⟨10.1016/j.fsigen.2016.10.005⟩. ⟨hal-01588958⟩
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Charles Chatard, Olivier Pascual, Yves Jourlin, Stéphane Marinesco, Daniel Barbier, et al.. Multiphysics Probe for Deep Brain Monitoring of Glioblastoma Environment. Proceedings, MDPI, 2017, 1 (4), 502 (4 p.). ⟨10.3390/proceedings1040502⟩. ⟨hal-01917672⟩
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Christina Hazard, Laura Kruitbos, Hazel Davidson, Andy Taylor, David Johnson. Contrasting effects of intra- and interspecific identity and richness of ectomycorrhizal fungi on host plants, nutrient retention and multifunctionality. New Phytologist, Wiley, 2017, 213 (2), pp.852-863. ⟨10.1111/nph.14184⟩. ⟨hal-01970312⟩
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Fabien Sixdenier, Riccardo Scorretti. Numerical model of static hysteresis taking into account temperature. International Journal of Numerical Modelling: Electronic Networks, Devices and Fields, Wiley, 2017, ⟨10.1002/jnm.2221⟩. ⟨hal-01497369⟩
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Laurine S Blanchard, Anaïs Monin, Hounaïda Ouertani, Lamia Touaibia, Elisa Michel, et al.. Survival and electrotransformation of Pseudomonas syringae strains under simulated cloud-like conditions.. FEMS Microbiology Ecology, Wiley-Blackwell, 2017, 93 (5), pp.fix057. ⟨10.1093/femsec/fix057⟩. ⟨hal-01608828⟩
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David Royet, Yoann Hériveaux, Julien Marchalot, Riccardo Scorretti, André Dias, et al.. Using injection molding and reversible bonding for easy fabrication of magnetic cell trapping and sorting devices. Journal of Magnetism and Magnetic Materials, Elsevier, 2017, 427, pp.306-313. ⟨10.1016/j.jmmm.2016.10.102⟩. ⟨hal-01389920⟩
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2016

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Lotfi Mhamdi, Nejib Mhamdi, Naceur Mhamdi, Philippe Lejeune, Nicole Jaffrezic-Renault, et al.. Effect of a static magnetic field on Escherichia coli adhesion and orientation. Canadian Journal of Microbiology, NRC Research Press, 2016, 62 (11), pp.944-952. ⟨10.1139/cjm-2015-0839⟩. ⟨hal-01546555⟩
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Débora Toledo Ramos, Helen Simone Chiaranda Lazzarin, Pedro J.J. Alvarez, Timothy M. Vogel, Marilda Fernandes, et al.. Biodiesel presence in the source zone hinders aromatic hydrocarbons attenuation in a B20-contaminated groundwater. Journal of Contaminant Hydrology, Elsevier, 2016, 193, pp.48 - 53. ⟨10.1016/j.jconhyd.2016.09.002⟩. ⟨hal-01588990⟩
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Thibaut Masy, Sandrine Demanèche, Olivier Tromme, Philippe Thonart, Philippe Jacques, et al.. Hydrocarbon biostimulation and bioaugmentation in organic carbon and clay-rich soils. Soil Biology and Biochemistry, Elsevier, 2016, 99, pp.66 - 74. ⟨10.1016/j.soilbio.2016.04.016⟩. ⟨hal-01589025⟩
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Jéssica Subirats, Alexandre Sànchez-Melsió, Carles Borrego, José Luis Balcázar, Pascal Simonet. Metagenomic analysis reveals that bacteriophages are reservoirs of antibiotic resistance genes. International Journal of Antimicrobial Agents, Elsevier, 2016, 48 (2), pp.163-167. ⟨10.1016/j.ijantimicag.2016.04.028⟩. ⟨hal-01589019⟩
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Samia Ighilhariz, Philippe de Lajudie, Abdelkader Bekki, Zohra Ighilhariz, Robin Duponnois, et al.. Effect of anthropisation and revegetation efforts on soil bacterial community structure in Terga sandpit, Algeria. Journal of Biodiversity and Environmental Sciences, 2016, 9 (1), pp.283-296. ⟨hal-01969961⟩
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Charif Dehchar, Rochdi Kherrat, Saida Zougar, Naoufel Haddour. Electrocatalytic Reduction of Hydrogen Peroxide at Nanocrystalline Silver Film Electroless Deposited on Epoxy Glass Substrate. Sensor letters, American Scientific Publishers, 2016, 14 (7), pp.678-684. ⟨10.1166/sl.2016.3682⟩. ⟨hal-01997324⟩
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Qiongli Bao, Yizong Huang, Fenghua Wang, Sanan Nie, Graeme W. Nicol, et al.. Effect of nitrogen fertilizer and/or rice straw amendment on methanogenic archaeal communities and methane production from a rice paddy soil. Applied Microbiology and Biotechnology, Springer Verlag, 2016, 100 (13), pp.5989 - 5998. ⟨10.1007/s00253-016-7377-z⟩. ⟨hal-01589066⟩
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Rony Ibrahim, Damien Voyer, Arnaud Bréard, Julien Huillery, Christian Vollaire, et al.. Experiments of Time-Reversed Pulse Waves for Wireless Power Transmission in an Indoor Environment. IEEE Transactions on Microwave Theory and Techniques, Institute of Electrical and Electronics Engineers, 2016, 64 (7), pp.2159 - 2170. ⟨10.1109/TMTT.2016.2572679⟩. ⟨hal-01388381⟩
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Laura Lehtovirta-Morley, Jenna Ross, Linda Hink, Eva Weber, Cécile Gubry-Rangin, et al.. Isolation of ‘ Candidatus Nitrosocosmicus franklandus’, a novel ureolytic soil archaeal ammonia oxidiser with tolerance to high ammonia concentration. FEMS Microbiology Ecology, Wiley-Blackwell, 2016, 92 (5), pp.fiw057. ⟨10.1093/femsec/fiw057⟩. ⟨hal-01986008⟩
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Mounia Achoch, Rodrigo Dorantes-Gilardi, Chris Wymant, Giovanni Feverati, Kavé Salamatian, et al.. Protein structural robustness to mutations: an in silico investigation. Physical Chemistry Chemical Physics, Royal Society of Chemistry, 2016, Phys. Chem. Chem. Phys., 16, pp.13770-13780. ⟨10.1039/C5CP06091E⟩. ⟨hal-01237924⟩
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Joseph Nesme, Wafa Achouak, Spiros Agathos, Mark Bailey, Petr Baldrian, et al.. Back to the Future of Soil Metagenomics. Frontiers in Microbiology, Frontiers Media, 2016, 7, ⟨10.3389/fmicb.2016.00073⟩. ⟨hal-01923285⟩
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Laura E. Lehtovirta-Morley, Luis A. Sayavedra-Soto, Nicolas Gallois, Stefan Schouten, Lisa Y. Stein, et al.. Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon “Candidatus Nitrosotalea devanaterra”. Applied and Environmental Microbiology, American Society for Microbiology, 2016, 82 (9), pp.2608 - 2619. ⟨10.1128/AEM.04031-15⟩. ⟨hal-01589048⟩
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Assia Kaci, Fabienne Petit, Matthieu Fournier, Sébastien Cecillon, Dominique Boust, et al.. Diversity of active microbial communities subjected to long-term exposure to chemical contaminants along a 40-year-old sediment core. Environmental Science and Pollution Research, Springer Verlag, 2016, 23 (5), pp.4095-4110. ⟨10.1007/s11356-015-4506-7⟩. ⟨hal-02110969⟩
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Eduard Vico Oton, Christopher Quince, Graeme W Nicol, James I Prosser, Cécile Gubry-Rangin. Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota. ISME Journal, Nature Publishing Group, 2016, 10 (1), pp.85 - 96. ⟨10.1038/ismej.2015.101⟩. ⟨hal-01589185⟩
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Kornelia Smalla, Pascal Simonet, James Tiedje, Edward Topp. Editorial: Special section of FEMS Microbiology Ecology on the environmental dimension of antibiotic resistance. FEMS Microbiology Ecology, Wiley-Blackwell, 2016, 92 (11), 4 p. ⟨10.1093/femsec/fiw172⟩. ⟨hal-01604882⟩
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Julien Pézard, Mihai Lazar, Naoufel Haddour, Claude Botella, Pascale Roy, et al.. Realization of a graphene gate field effect transistor for electrochemical detection and biosensors. Thin Solid Films, Elsevier, 2016, ⟨10.1016/j.tsf.2016.04.031⟩. ⟨hal-01389621⟩
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Fabien Sixdenier, Oualid Messal, Alaa Hilal, Christian Martin, Marie-Ange Raulet, et al.. Temperature dependent extension of a static hysteresis model. IEEE Transactions on Magnetics, Institute of Electrical and Electronics Engineers, 2016, 52 (3), ⟨10.1109/TMAG.2015.2481090⟩. ⟨hal-01295334⟩
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2015

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Jérémy Pivetal, Marie Frénéa-Robin, Naoufel Haddour, C. Vézy, L.-F. Zanini, et al.. Development and applications of a DNA labeling method with magnetic nanoparticles to study the role of horizontal gene transfer events between bacteria in soil pollutant bioremediation processes. Environmental Science and Pollution Research, Springer Verlag, 2015, 22 (24), pp.20322-20327. ⟨10.1007/s11356-015-5614-0⟩. ⟨hal-01389933⟩
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Lorrie Maccario, Laura Sanguino Casado, Timothy Vogel, Catherine Larose. Snow and ice ecosystems: not so extreme. Research in Microbiology, Elsevier, 2015, 166 (10), pp.782-795. ⟨10.1016/j.resmic.2015.09.002⟩. ⟨hal-01986288⟩
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Allaoua Kedjadja, Elhadj Kolli, Abdelmalek Bouraiou, Rachid Merdès, Naoufel Haddour. 1,1′-{1,4-Phenylene bis[3-(6-chloro-2-methyl-4-phenylquinolin-3-yl)-4,5-dihydro-1H-pyrazole-5,1-diyl]}dibutan-1-one. Molbank, MDPI, 2015, 2015 (4), ⟨10.3390/M868⟩. ⟨hal-01921337⟩
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Elisabeth Navarro, Olivier Fabrègue, Riccardo Scorretti, Jérémy Reboulet, Pascal Simonet, et al.. RisaAligner software for aligning fluorescence data between Agilent 2100 Bioanalyzer chips: Application to soil microbial community analysis. Biotechniques, Eaton Publishing, 2015, 59 (6), pp.347-358. ⟨10.2144/000114363⟩. ⟨hal-01245371⟩
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Bertrand Reuillard, Caroline Abreu, Noémie Lalaoui, Alan Le Goff, Michael Holzinger, et al.. One-year stability for a glucose/oxygen biofuel cell combined with pH reactivation of the laccase/carbon nanotube biocathode. Bioelectrochemistry, Elsevier, 2015, 106, pp.73 - 76. ⟨10.1016/j.bioelechem.2015.04.009⟩. ⟨hal-01388118⟩
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Chengsheng Zhu, Tom O. Delmont, Timothy M. Vogel, Yana Bromberg. Functional Basis of Microorganism Classification. PLoS Computational Biology, Public Library of Science, 2015, 11 (8), ⟨10.1371/journal.pcbi.1004472⟩. ⟨hal-01589154⟩
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Firas Khaled, Olivier Ondel, Bruno Allard, François Buret. Voltage balancing strategies for serial connection of microbial fuel cells. European Physical Journal: Applied Physics, EDP Sciences, 2015, 71 (1), ⟨10.1051/epjap/2015150044⟩. ⟨hal-01388114⟩
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Barbara Stempfhuber, Marion Engel, Doreen Fischer, Ganna Neskovic-Prit, Tesfaye Wubet, et al.. pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils. Microbial Ecology, Springer Verlag, 2015, 69 (4), pp.879-883. ⟨10.1007/s00248-014-0548-5⟩. ⟨hal-01986023⟩
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Tom O. Delmont, A. Murat Eren, Lorrie Maccario, Emmanuel Prestat, Özcan C. Esen, et al.. Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics. Frontiers in Microbiology, Frontiers Media, 2015, 6, ⟨10.3389/fmicb.2015.00358⟩. ⟨hal-01589179⟩
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Samia Menad, Laure Franqueville, Naoufel Haddour, François Buret, Marie Frénéa-Robin. nDEP-driven cell patterning and bottom-up construction of cell aggregates using a new bioelectronic chip. Acta Biomaterialia, Elsevier, 2015, 17, pp.107-114. ⟨10.1016/j.actbio.2015.01.011⟩. ⟨hal-01113992⟩
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Laura Sanguino Casado, Laure Franqueville, Timothy M. Vogel, Catherine Larose. Linking environmental prokaryotic viruses and their host through CRISPRs. FEMS Microbiology Ecology, Wiley-Blackwell, 2015, 91 (5), ⟨10.1093/femsec/fiv046⟩. ⟨hal-01589168⟩
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Jérémy Pivetal, David Royet, Georgeta Ciuta, Marie Frenea-Robin, Naoufel Haddour, et al.. Micro-magnet arrays for specific single bacterial cell positioning. Journal of Magnetism and Magnetic Materials, Elsevier, 2015, 380, pp.72-77. ⟨10.1016/j.jmmm.2014.09.068⟩. ⟨hal-01113985⟩
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Marie Breton, François Buret, Laurent Krähenbühl, Michael Leguèbe, Lluis M. Mir, et al.. Non-Linear Steady-State Electrical Current Modeling for the Electropermeabilization of Biological Tissue. IEEE Transactions on Magnetics, Institute of Electrical and Electronics Engineers, 2015, 51 (3), pp.7402104. ⟨10.1109/TMAG.2014.2351836⟩. ⟨hal-01153095⟩
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Luca Zilberti, Damien Voyer, Oriano Bottauscio, Mario Chiampi, Riccardo Scorretti. Effect of Tissue Parameters on Skin Heating Due to Millimeter EM Waves. IEEE Transactions on Magnetics, Institute of Electrical and Electronics Engineers, 2015, 51 (3), ⟨10.1109/TMAG.2014.2363898⟩. ⟨hal-01495148⟩
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M Benouis, Nicole Jaffrezic-Renault, Claude Martelet, Isabelle Dumazet-Bonnamour, R. Lamartine. High Sensitive Surface Plasmon Resonance (SPR) Sensor Based on Modified Calix(4)arene Self Assembled Monolayer for Cadmium Ions Detection. Materials Transactions, Nihon Kinzoku Gakkai, 2015, 56 (4), pp.539-544. ⟨10.2320/matertrans.M2014366⟩. ⟨hal-01165287⟩
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2014

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Oualid Messal, Fabien Sixdenier, Laurent Morel, Noël Burais, Thierry Waeckerle. Simulation of Low Nickel Content Alloys For Industrial Ground Fault Circuit-Breaker Relays. IEEE Transactions on Magnetics, Institute of Electrical and Electronics Engineers, 2014, 51 (6), pp.6991580. ⟨10.1109/TMAG.2014.2384004⟩. ⟨hal-01374152⟩
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Tom Delmont, Davide Francioli, Sophie Jacquesson, Sandra Laoudi, Alban Mathieu, et al.. Microbial community development and unseen diversity recovery in inoculated sterile soil. Biology and Fertility of Soils, Springer Verlag, 2014, 50 (7), pp.1069 - 1076. ⟨10.1007/s00374-014-0925-8⟩. ⟨hal-01928111⟩
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Joseph Nesme, Sébastien Cecillon, Tom Delmont, Jean-Michel Monier, Timothy Vogel, et al.. Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment. Current Biology - CB, Elsevier, 2014, pp.voir DOI. ⟨10.1016/j.cub.2014.03.036⟩. ⟨hal-00988678⟩
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Samuel Jacquiod, Sandrine Demanèche, Laure Franqueville, Luka Ausec, Zhuofei Xu, et al.. Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library. Journal of Biotechnology, Elsevier, 2014, epub ahead of print. ⟨10.1016/j.jbiotec.2014.03.036⟩. ⟨hal-00989480⟩
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