Publications HAL

Article dans une revue

ref_biblio
Frédéric Chamieh, Anne-Margaux Collignon, Benjamin R. Coyac, Julie Lesieur, Sandy Ribes, et al.. Accelerated craniofacial bone regeneration through dense collagen gel scaffolds seeded with dental pulp stem cells. Scientific Reports, 2016, 6 (1), ⟨10.1038/srep38814⟩. ⟨hal-01624254⟩
Accès au texte intégral et bibtex
https://u-paris.hal.science/hal-01624254/file/srep38814.pdf BibTex
ref_biblio
Ndongo Dia, Laurence Lavie, Ngor Faye, Guy Méténier, Edouard Yeramian, et al.. Subtelomere organization in the genome of the microsporidian Encephalitozoon cuniculi: patterns of repeated sequences and physicochemical signatures. BMC Genomics, 2016, 17 (1), pp.34. ⟨10.1186/s12864-015-1920-7⟩. ⟨hal-01983985⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01983985/file/Dia_2016_BMC_genomics.pdf BibTex
ref_biblio
Philippe Poirier, Cécile Doderer-Lang, Pascal Atchade, Marie-Louise Coquelin de L’isle, Ahmed Abou-Bacar, et al.. The hide and seek of Plasmodium vivax in West Africa: report from a large-scale study in Beninese asymptomatic subjects. Malaria Journal, 2016, 15 (1), ⟨10.1186/s12936-016-1620-z⟩. ⟨hal-01987765⟩
Accès au bibtex
BibTex
ref_biblio
Denise Antona, Manoëlle Guillemin Kossorotoff, Isabelle Schuffenecker, Audrey Mirand, Marianne Leruez-Ville, et al.. Severe paediatric conditions linked with EV-A71 and EV-D68, France, May to October 2016. Eurosurveillance, 2016, 21 (46), ⟨10.2807/1560-7917.ES.2016.21.46.30402⟩. ⟨hal-01883166⟩
Accès au bibtex
BibTex
ref_biblio
Benjamin Legrand, Amélie Lamarque, Marion Sabart, Delphine Latour. Characterization of akinetes from cyanobacterial strains and lake sediment: A study of their resistance and toxic potential. Harmful Algae, 2016, 59, pp.42 - 50. ⟨10.1016/j.hal.2016.09.003⟩. ⟨hal-01919205⟩
Accès au bibtex
BibTex
ref_biblio
Jeremy Lafolie, Audrey Mirand, Maud Salmona, Alexandre Lautrette, Christine Archimbaud, et al.. Severe Pneumonia Associated with Adenovirus Type 55 Infection, France, 2014. Emerging Infectious Diseases, 2016, 22 (11), pp.2012-2014. ⟨10.3201/eid2211.160728⟩. ⟨hal-01883168⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01883168/file/16-0728.pdf BibTex
ref_biblio
C. Jacomet, G. Illes, F. Kwiatkowski, M. Vidal, N. Mrozek, et al.. Prevalence of aortic valve dystrophy and insufficiency in a cohort of 255 HIV-positive patients followed-up in a cardiology department between 2012 and 2014. International Journal of Cardiology, 2016, 220, pp.82 - 86. ⟨10.1016/j.ijcard.2016.06.237⟩. ⟨hal-01675311⟩
Accès au bibtex
BibTex
ref_biblio
Anne-Catherine Lehours, Anne-Hélène Le Jeune, Jean-Pierre Aguer, Régis Céréghino, Bruno Corbara, et al.. Unexpectedly high bacteriochlorophyll a concentrations in neotropical tank bromeliads. Environmental Microbiology Reports, 2016, 8 (5), pp.689 - 698. ⟨10.1111/1758-2229.12426⟩. ⟨hal-01623623⟩
Accès au bibtex
BibTex
ref_biblio
Benjamin Legrand, Jerome Lesobre, Jonathan Colombet, Delphine Latour, Marion Sabart. Molecular tools to detect anatoxin-a genes in aquatic ecosystems: Toward a new nested PCR-based method. Harmful Algae, 2016, 58, ⟨10.1016/j.hal.2016.07.002⟩. ⟨hal-01360406⟩
Accès au bibtex
BibTex
ref_biblio
S. Samoudi, D. Latour, J. Robin, M. Sabart, Benjamin Misson, et al.. Horizontal distribution of the cell abundance and toxicity of Microcystis in a hypereutrophic Moroccan reservoir. Contemporary Problems of Ecology, 2016, 9 (5), pp.554 - 562. ⟨10.1134/S1995425516050139⟩. ⟨hal-01826036⟩
Accès au bibtex
BibTex
ref_biblio
Bernard Vigues, Jonathan Colombet, Raghida Damaj. Differential localization and functional specialization of centrin analogs in the parasitic ciliate Trichodina pediculus. Protoplasma, 2016, 253 (5), pp.1385-1388. ⟨hal-01984022⟩
Accès au bibtex
BibTex
ref_biblio
Dima El Safadi, Amandine Cian, Céline Nourrisson, Bruno Pereira, Christelle Morelle, et al.. Prevalence, risk factors for infection and subtype distribution of the intestinal parasite Blastocystis sp. from a large-scale multi-center study in France. BMC Infectious Diseases, 2016, 16 (1), pp.451. ⟨10.1186/s12879-016-1776-8⟩. ⟨hal-01368323⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01368323/file/s12879-016-1776-8.pdf BibTex
ref_biblio
Shengnan Li, Xiaoli Shi, Cécile Lepère, Mixue Li, Xiujuan Wang, et al.. Unexpected predominance of photosynthetic picoeukaryotes in shallow eutrophic lakes. Journal of Plankton Research, 2016, 38 (4), pp.830-842. ⟨10.1093/plankt/fbw042⟩. ⟨hal-01984159⟩
Accès au bibtex
BibTex
ref_biblio
Mathilde Jeanbille, Jérôme Gury, Robert Duran, Jacek Tronczynski, Jean-François Ghiglione, et al.. Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments. Frontiers in Microbiology, 2016, 7, pp.1303. ⟨10.3389/fmicb.2016.01303⟩. ⟨hal-01599382v2⟩
Accès au texte intégral et bibtex
https://hal.sorbonne-universite.fr/hal-01599382/file/fmicb-07-01303.pdf BibTex
ref_biblio
Alain Dejean, Frédéric Azémar, Régis Céréghino, Maurice Leponce, Bruno Corbara, et al.. The dynamics of ant mosaics in tropical rainforests characterized using the Self-Organizing Map algorithm. Insect Science, 2016, 23 (4), pp.630-637. ⟨hal-01983631⟩
Accès au bibtex
BibTex
ref_biblio
S. Pradeep Ram, S. Chaibi-Slouma, J. Keshri, J. Colombet, T. Sime-Ngando. Functional Responses of Bacterioplankton Diversity and Metabolism to Experimental Bottom-Up and Top-Down Forcings. Microbial ecology, 2016, 72 (2), pp.347 - 358. ⟨10.1007/s00248-016-0782-0⟩. ⟨hal-01623632⟩
Accès au bibtex
BibTex
ref_biblio
O. Lesens, O Baud, C. Henquell, A Lhermet, Nurse, J. J. Beytout. Varicella outbreak in Sudanese refugees from Calais. Journal of Travel Medicine, 2016, 23 (5), ⟨10.1093/jtm/taw042⟩. ⟨hal-01883179⟩
Accès au bibtex
BibTex
ref_biblio
Jérôme Ory, Geneviève Bricheux, Anne Togola, Jean Louis Bonnet, Florence Donnadieu-Bernard, et al.. Ciprofloxacin residue and antibiotic-resistant biofilm bacteria in hospital effluent. Environmental Pollution (1970), 2016, 214, ⟨10.1016/j.envpol.2016.04.033⟩. ⟨hal-01342460⟩
Accès au bibtex
BibTex
ref_biblio
David Biron, M. Giroux, A. Maire, Vincent Charles. Lethal Effects of Microwave Exposures on Eggs and Pupae of the Cabbage Maggot and Cabbage Plants. Journal of Microwave Power and Electromagnetic Energy, 2016, 31 (4), pp.228-237. ⟨10.1080/08327823.1996.11688314⟩. ⟨hal-02308088⟩
Accès au bibtex
BibTex
ref_biblio
A. Lhermet, Z. Lacombe, O. Baud, C. Henquell, J. J. Beytout, et al.. INF-04 - Épidémie de varicelle chez des migrants Soudanais en provenance de Calais. Médecine et Maladies Infectieuses (1971-2020), 2016, 46 (4), ⟨10.1016/S0399-077X(16)30590-X⟩. ⟨hal-01883174⟩
Accès au bibtex
BibTex
ref_biblio
Léo Chassiot, Emmanuel Chapron, Christian Di Giovanni, Patrick Albéric, Patrick Lajeunesse, et al.. Extreme events in the sedimentary record of maar Lake Pavin: Implications for natural hazards assessment in the French Massif Central. Quaternary Science Reviews, 2016, 141, pp.9-25. ⟨10.1016/j.quascirev.2016.03.020⟩. ⟨insu-01303646⟩
Accès au bibtex
BibTex
ref_biblio
G. Laurichesse, S. Casanova, V. V. Corbin, A. Mirand, C. Henquell, et al.. HEP-06 - Nouveaux antiviraux oraux contre le virus de l’hépatite C chez des patients co-infectés VIH-VHC : remarquables résultats des combinaisons orales sans interféron, 2014-2015. Médecine et Maladies Infectieuses (1971-2020), 2016, 46 (4), ⟨10.1016/S0399-077X(16)30383-3⟩. ⟨hal-01883177⟩
Accès au bibtex
BibTex
ref_biblio
Rafik Boudra, Rosyne Lagrafeuille, Corinne Lours-Calet, Cyrille de Joussineau, Gaëlle Loubeau-Legros, et al.. mTOR transcriptionally and post-transcriptionally regulates Npm1 gene expression to contribute to enhanced proliferation in cells with Pten inactivation. Cell Cycle, 2016, 15 (10), pp.1352 - 1362. ⟨10.1080/15384101.2016.1166319⟩. ⟨hal-01922092⟩
Accès au bibtex
BibTex
ref_biblio
Louis Carles, Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan, Muriel Joly, Armelle Vigouroux, Solange Moréra, et al.. Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione.. Biochemical Journal, 2016, 473 (10), pp.1443-1453. ⟨10.1042/BJ20151366⟩. ⟨hal-01457189⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01457189/file/Carles%20et%20al%202016.pdf BibTex
ref_biblio
P Flandre, P Pugliese, C Allavena, C Katlama, L Cotte, et al.. Comparative risk of failure of ABC/3TC or TDF/FTC based first-line regimens in patients with a high viral load.. HIV Medicine, 2016, 17 (5), pp.380-4. ⟨10.1111/hiv.12306⟩. ⟨hal-01309266⟩
Accès au bibtex
BibTex
ref_biblio
Marwan Osman, Dima El Safadi, Amandine Cian, Sadia Benamrouz, Céline Nourrisson, et al.. Correction: Prevalence and Risk Factors for Intestinal Protozoan Infections with Cryptosporidium, Giardia, Blastocystis and Dientamoeba among Schoolchildren in Tripoli, Lebanon. PLoS Neglected Tropical Diseases, 2016, 10 (4), ⟨10.1371/journal.pntd.0004643⟩. ⟨hal-01363187⟩
Accès au bibtex
BibTex
ref_biblio
M Krupovic, Be Dutilh, Em Adriaenssens, J Wittmann, Fk Vogensen, et al.. Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee.. Archives of Virology, 2016, 161 (4), pp.1095-1099. ⟨10.1007/s00705-015-2728-0⟩. ⟨hal-01557489⟩
Accès au bibtex
BibTex
ref_biblio
Marwan Osman, Dima El Safadi, Amandine Cian, Sadia Benamrouz, Céline Nourrisson, et al.. Prevalence and Risk Factors for Intestinal Protozoan Infections with Cryptosporidium, Giardia, Blastocystis and Dientamoeba among Schoolchildren in Tripoli, Lebanon. PLoS Neglected Tropical Diseases, 2016, 10 (3), ⟨10.1371/journal.pntd.0004496⟩. ⟨hal-01363185⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01363185/file/file.pdf BibTex
ref_biblio
Thomas Jephcott, Télesphore Sime-Ngando, Frank H. Gleason, Deborah J. Macarthur. Host–parasite interactions in food webs: Diversity, stability, and coevolution. Food Webs, 2016, 6, pp.1 - 8. ⟨10.1016/j.fooweb.2015.12.001⟩. ⟨hal-01623614⟩
Accès au bibtex
BibTex
ref_biblio
M. Jobard, J. Pessiot, R. Nouaille, G. Fonty, T. Sime-Ngando. Microbial diversity in support of anaerobic biomass valorization. Critical Reviews in Biotechnology, 2016, 37 (1), pp.1 - 10. ⟨10.3109/07388551.2015.1100584⟩. ⟨hal-01624065⟩
Accès au bibtex
BibTex
ref_biblio
Julien Aniort, Ali Ait Hssain, Bruno Pereira, Elisabeth Coupez, Pierre Antoine Pioche, et al.. Daily urinary urea excretion to guide intermittent hemodialysis weaning in critically ill patients. Critical Care, 2016, 20, pp.43. ⟨10.1186/s13054-016-1225-5⟩. ⟨hal-04126999⟩
Accès au texte intégral et bibtex
https://uca.hal.science/hal-04126999/file/13054_2016_Article_1225.pdf BibTex
ref_biblio
Angia Sriram Pradeep Ram, Jonathan Colombet, Fanny Perrière, Antoine Thouvenot, Télesphore Sime-Ngando. Viral Regulation of Prokaryotic Carbon Metabolism in a Hypereutrophic Freshwater Reservoir Ecosystem (Villerest, France). Frontiers in Microbiology, 2016, 7, ⟨10.3389/fmicb.2016.00081⟩. ⟨hal-01623641⟩
Accès au bibtex
BibTex
ref_biblio
C. Lontsi Djimeli, A. Tamsa Arfao, V Rossi, N Nsulem, V. Raspal, et al.. Impact of two disinfectants on detachment of Enterococcus faecalis from polythene in aquatic microcosm. Research in Biotechnology, 2016, 7 (1), ⟨10.19071/rib.2016.v7.2981⟩. ⟨hal-01626931⟩
Accès au bibtex
BibTex
ref_biblio
A. Laude, S. Valot, Guillaume Desoubeaux, N. Argy, C. Nourrisson, et al.. Is real-time PCR-based diagnosis similar in performance to routine parasitological examination for the identification of Giardia intestinalis , Cryptosporidium parvum / Cryptosporidium hominis and Entamoeba histolytica from stool samples? Evaluation of a new commercial multiplex PCR assay and literature review. Clinical Microbiology and Infection, 2016, 22 (2), pp.190.e1-190.e8. ⟨10.1016/j.cmi.2015.10.019⟩. ⟨hal-01698271⟩
Accès au bibtex
BibTex
ref_biblio
M. Vidal, J.P. Genillon, E. Forestier, S. Trouiller, B. Pereira, et al.. Outcome of totally implantable venous-access port-related infections. Médecine et Maladies Infectieuses (1971-2020), 2016, 46 (1), pp.32-38. ⟨hal-01983517⟩
Accès au bibtex
BibTex
ref_biblio
Ines Othman, Romain Volle, Aida Elargoubi, Mohamed Guediche, Mohamed Chakroun, et al.. Enterovirus meningitis in Tunisia (Monastir, Mahdia, 2011–2013): identification of virus variants cocirculating in France. Diagnostic Microbiology and Infectious Disease, 2016, 84 (2), pp.116 - 122. ⟨10.1016/j.diagmicrobio.2015.10.019⟩. ⟨hal-01883192⟩
Accès au bibtex
BibTex
ref_biblio
Damien Bouvier, Thomas Duret, Paul Rouzaire, Matthieu Jabaudon, Marion Rouzaire, et al.. Preanalytical, analytical, gestational and pediatric aspects of the S100B immuno-assays. Clinical Chemistry and Laboratory Medicine, 2016, 54 (5), ⟨10.1515/cclm-2015-0771⟩. ⟨hal-04885666⟩
Accès au bibtex
BibTex
ref_biblio
Imen Louati, Noémie Pascault, Didier Debroas, Cécile Bernard, Jean-François Humbert, et al.. Correction: Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus. PLoS ONE, 2016, 11 (1), pp.e0146866. ⟨10.1371/journal.pone.0146866⟩. ⟨hal-01360257⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01360257/file/pone.0146866.pdf BibTex
ref_biblio
Alain Dejean, Jérôme Orivel, Frédéric Azémar, Bruno Hérault, Bruno Corbara. A cuckoo-like parasitic moth leads African weaver ant colonies to their ruin. Scientific Reports, 2016, 6, ⟨10.1038/srep23778⟩. ⟨hal-02630869⟩
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02630869/file/2016_Dejean_Scientific%20Reports_1.pdf BibTex
ref_biblio
Isabelle Schuffenecker, Audrey Mirand, Laurence Josset, Cécile Henquell, Denise Hecquet, et al.. Epidemiological and clinical characteristics of patients infected with enterovirus D68, France, July to December 2014. Eurosurveillance, 2016, 21 (19), ⟨10.2807/1560-7917.es.2016.21.19.30226⟩. ⟨hal-01883183⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01883183/file/eurosurv-21-30226-2.pdf BibTex
ref_biblio
Olivier Crouzet, Franck Poly, Frédérique Bonnemoy, David Bru, Isabelle Batisson, et al.. Functional and structural responses of soil N-cycling microbial communities to the herbicide mesotrione: a dose-effect microcosm approach. Environmental Science and Pollution Research, 2016, 23 (5), pp.4207 - 4217. ⟨10.1007/s11356-015-4797-8⟩. ⟨hal-01394067⟩
Accès au bibtex
BibTex
ref_biblio
Anne Mercier, Joanne Bertaux, Jérôme Lesobre, Kevin Gravouil, Julien Verdon, et al.. Characterization of biofilm formation in natural water subjected to low-frequency electromagnetic fields.. Biofouling, 2016, 32 (3), pp.287-99. ⟨10.1080/08927014.2015.1137896⟩. ⟨hal-01427807⟩
Accès au bibtex
BibTex
ref_biblio
Flore Ballaud, Alexis Dufresne, Andre-Jean Francez, Jonathan Colombet, Télesphore Sime-Ngando, et al.. Dynamics of Viral Abundance and Diversity in a Sphagnum-Dominated Peatland: Temporal Fluctuations Prevail Over Habitat. Frontiers in Microbiology, 2016, 6, pp.1494. ⟨10.3389/fmicb.2015.01494⟩. ⟨hal-01263117⟩
Accès au texte intégral et bibtex
https://univ-rennes.hal.science/hal-01263117/file/fmicb-06-01494.pdf BibTex
ref_biblio
Thomas Bertran, Patrick Brachet, Marjolaine Vareille, Julie Falenta, Annie Dosgilbert, et al.. Slight Pro-Inflammatory Immunomodulation Properties of Dendritic Cells byGardnerella vaginalis: The “Invisible Man” of Bacterial Vaginosis?. Journal of Immunology Research, 2016, pp.1-13. ⟨10.1155/2016/9747480⟩. ⟨hal-01595704⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01595704/file/2016_Bertran_Slight%20_J%20Immunol%20Res_%7B53C02D9C-AD6B-41A4-B94B-C1623ED7D67C%7D.pdf BibTex
ref_biblio
Claire Marquès, Christine Franceschi, Valérie Collin, Frédéric Laurent, Sonia Chatellier, et al.. Genome Sequence of a Clinical Staphylococcus aureus Strain from a Prosthetic Joint Infection. Genome Announcements, 2016, 4 (2), pp.e00198-16. ⟨10.1128/genomeA.00198-16⟩. ⟨hal-01394081⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01394081/file/Genome%20Announc.-2016-Marqu%C3%A8s-.pdf BibTex
ref_biblio
M. Kurtis Trzcinski, Diane Srivastava, Bruno Corbara, Olivier Dézerald, Céline Leroy, et al.. The effects of food web structure on ecosystem function exceeds those of precipitation. Journal of Animal Ecology, 2016, 85 (5), pp.1147-1160. ⟨10.1111/1365-2656.12538⟩. ⟨hal-01933190⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01933190/file/Trzcinski%20et%20al.%202016.pdf BibTex
ref_biblio
Lin Zhu, Anouk Zancarini, Imen Louati, Silvia de Cesare, Charlotte Duval, et al.. Bacterial communities associated with four cyanobacterial genera display structural and functional differences: evidence from an experimental approach. Frontiers in Microbiology, 2016, 7, pp.1-11. ⟨10.3389/fmicb.2016.01662⟩. ⟨hal-01602443⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01602443/file/2016_Zhu_Frontiers%20in%20Microbiology_1.pdf BibTex
ref_biblio
C. Nourrisson, I. Wawrzyniak, A. Cian, Valerie Livrelli, F. Viscogliosi, et al.. On Blastocystis secreted cysteine proteases: a legumain-activated cathepsin B increases paracellular permeability of intestinal Caco-2 cell monolayers. Parasitology, 2016, 143 (13), pp.1713-1722. ⟨10.1017/S0031182016001396⟩. ⟨hal-01606978⟩
Accès au bibtex
BibTex
ref_biblio
Alexandra Chapuis, Cécile Chabrot, Audrey Mirand, Philippe Poirier, Céline Nourrisson. Encephalitis caused by an unusual human herpes virus type 6 and Toxoplasma gondii co-infection in a cord blood transplant recipient. International Journal of Infectious Diseases, 2016, 46, pp.79-81. ⟨10.1016/j.ijid.2016.04.002⟩. ⟨hal-01883191⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01883191/file/1-s2.0-S1201971216310153-main%20%281%29.pdf BibTex
ref_biblio
Nathanael Lampe, David Biron, Jeremy M. C. Brown, Sébastien Incerti, Pierre Marin, et al.. Simulating the Impact of the Natural Radiation Background on Bacterial Systems: Implications for Very Low Radiation Biological Experiments. PLoS ONE, 2016, 11 (11), pp.e0166364. ⟨10.1371/journal.pone.0166364⟩. ⟨hal-01610267⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01610267/file/file%20%283%29.pdf BibTex
ref_biblio
Florence Donnadieu, Pascale Pascale Besse, P. Besse-Hoggan Besse-Hoggan, Christiane Forestier, Joan Artigas. Influence of streambed substratum composition on stream microbial communities exposed to the fungicide tebuconazole. Freshwater Biology, 2016, 61, pp.2026-2036. ⟨10.1111/fwb.12679⟩. ⟨hal-01479184⟩
Accès au bibtex
BibTex
ref_biblio
Damien Costa, Anne Mercier, Kevin Gravouil, Jérôme Lesobre, Julien Verdon, et al.. Occurrence and diversity of both bacterial and fungal communities in dental unit waterlines subjected to disinfectants.. Foodborne Pathogens and Disease, 2016, 74 (7), ⟨10.1093/femspd/ftw094⟩. ⟨hal-01427811⟩
Accès au bibtex
BibTex
ref_biblio
S. Pesce, O. Zoghlami, C. Margoum, J. Artigas, Arnaud Chaumot, et al.. Combined effects of drought and the fungicide tebuconazole on aquatic leaf litter decomposition. Aquatic Toxicology, 2016, 173, pp.120-131. ⟨10.1016/j.aquatox.2016.01.012⟩. ⟨hal-01804836⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01804836/file/ly2016-pub00046834.pdf BibTex
ref_biblio
Corinne Biderre-Petit, Eric Dugat-Bony, Mickaël Mege, Nicolas Parisot, Lorenz Adrian, et al.. Distribution of dehalococcoidia in the anaerobic deep water of a remote meromictic crater lake and detection of dehalococcoidia-derived reductive dehalogenase homologous genes. PLoS ONE, 2016, 11 (1), ⟨10.1371/journal.pone.0145558⟩. ⟨hal-01599389v2⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01599389/file/journal.pone.0145558_%7BCD5A8714-A800-4F9F-A650-EF9BCAE6A869%7D.pdf BibTex
ref_biblio
Nyree J. West, Cécile Lepère, Carmem-Lara de O. Manes, Philippe Catala, David J. Scanlan, et al.. Distinct Spatial Patterns of SAR11, SAR86, and Actinobacteria Diversity along a Transect in the Ultra-oligotrophic South Pacific Ocean. Frontiers in Microbiology, 2016, 7, pp.234. ⟨10.3389/fmicb.2016.00234⟩. ⟨hal-01294340⟩
Accès au texte intégral et bibtex
https://hal.sorbonne-universite.fr/hal-01294340/file/fmicb-07-00234.pdf BibTex
ref_biblio
Cyril Guilhen, Nicolas Charbonnel, Nicolas Parisot, Nathalie Gueguen, Agnès Iltis, et al.. Transcriptional profiling of Klebsiella pneumoniae defines signatures for planktonic, sessile and biofilm-dispersed cells. BMC Genomics, 2016, 17 (1), ⟨10.1186/s12864-016-2557-x⟩. ⟨hal-01394069⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01394069/file/2016_Guilhen_BMC%20Genomics_1.pdf BibTex
ref_biblio
O. B. Mobili, C. Lontsi Djimeli, L. M. Moungang, O Allaadhin, A Tamsa Arfao, et al.. Microbial treatment of water containing the bacteria Enterococcus faecalis and Escherichia coli in microcosm using Artemesia annua plant extract: Hierarchical order of some abiotic factors affecting cell’s cultivability. European Journal of Biotechnology and Bioscience, 2016, 4 (9), pp.16-26. ⟨hal-01392643⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01392643/file/Mobili%20et%20al%2C%202016%20%28Europ%20J%20Biotechnol%20Biosc%29%29.pdf BibTex
ref_biblio
Sylvie Miquel, Rosyne Lagrafeuille, Bertrand Souweine, Christiane Forestier. Anti-biofilm Activity as a Health Issue. Frontiers in Microbiology, 2016, 7, pp.592. ⟨10.3389/fmicb.2016.00592⟩. ⟨hal-01394090⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01394090/file/main.pdf BibTex
ref_biblio
Charles Vorilhon, Christophe Massard, Vincent Raspal, Yves Sibaud, Christiane Forestier, et al.. Feasibility of a Chronic Foreign Body Infection Model Studying the Influence of TiO2 Nanotube Layers on Bacterial Contamination. Journal of Biomaterials and Nanobiotechnology, 2016, 07 (01), pp.45 - 54. ⟨10.4236/jbnb.2016.71006⟩. ⟨hal-01829437⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01829437/file/JBNB_2016CV.pdf BibTex
ref_biblio
Céline Leroy, Jean-François Carrias, Régis Céréghino, Bruno Corbara. The contribution of microorganisms and metazoans to mineral nutrition in bromeliads. Journal of Plant Ecology, 2016, 9 (3), pp.241-255. ⟨10.1093/jpe/rtv052⟩. ⟨hal-01532637⟩
Accès au bibtex
BibTex
ref_biblio
Damien Balestrino, Mercédès Quintana, Nicolas Charbonnel, Christiane Forestier, Claire Lartigue, et al.. Compatibility of Injectable Anticoagulant Agents in Ethanol; In Vitro Antibiofilm Activity and Impact on Polyurethane Catheters of Enoxaparin 400 U/mL in 40% v/v Ethanol. PLoS ONE, 2016, 11 (7), ⟨10.1371/journal.pone.0159475⟩. ⟨hal-01394030⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01394030/file/main.pdf BibTex
ref_biblio
Benoit Keraval, Anne Catherine Lehours, Jonathan Colombet, Christian Amblard, Gaël Alvarez, et al.. Soil carbon dioxide emissions controlled by an extracellular oxidative metabolism identifiable by its isotope signature. Biogeosciences, 2016, 13 (22), pp.6353 - 6362. ⟨10.5194/bg-13-6353-2016⟩. ⟨hal-01595310⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01595310/file/Keraval_B_2016_Biogeosciences_%7BD828EBE8-97C8-48F3-B4C4-81E0736A1373%7D.pdf BibTex
ref_biblio
Christophe Audebert, Gaël Even, Amandine Cian, Dima El Safadi, Gabriela Certad, et al.. Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota. Scientific Reports, 2016, 6, pp.25255. ⟨10.1038/srep25255⟩. ⟨hal-01363189⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01363189/file/Colonization%20with%20the%20enteric%20protozoa%20Blastocystis%20is%20associated%20with%20increased%20diversity%20of%20human%20gut%20bacterial%20microbiota.pdf BibTex
ref_biblio
E. Quévrain, M.A. Maubert, C. Michon, F. Chain, R. Marquant, et al.. Identification of an anti-inflammatory protein from Faecalibacterium prausnitzii, a commensal bacterium deficient in Crohn's disease. Gut, 2016, 65 (3), pp.415-425. ⟨10.1136/gutjnl-2014-307649⟩. ⟨hal-02046235⟩
Accès au texte intégral et bibtex
https://normandie-univ.hal.science/hal-02046235/file/nihms-830235.pdf BibTex
ref_biblio
Kada Klouche, Samir Jaber, Jean-Louis Trouillet, Fabrice Bruneel, Laurent Argaud, et al.. Empirical Micafungin Treatment and Survival Without Invasive Fungal Infection in Adults With ICU-Acquired Sepsis, Candida Colonization, and Multiple Organ Failure The EMPIRICUS Randomized Clinical Trial. Journal of the American Medical Association, 2016, 316 (15), pp.1555--1564. ⟨10.1001/jama.2016.14655⟩. ⟨hal-01405822⟩
Accès au bibtex
BibTex
ref_biblio
P. Duval, C. Chatelard-Chauvin, C. Gayard, E. Rifa, P. Bouchard, et al.. Microbial dynamics in industrial blue veined cheeses in different packaging. International Dairy Journal, 2016, 56, pp.198 - 207. ⟨10.1016/j.idairyj.2016.01.024⟩. ⟨hal-01393545⟩
Accès au bibtex
BibTex
ref_biblio
Antoine Tamsa Arfao, Chrétien Lontsi Djimeli, Olive V Noah Ewoti, Geneviève Bricheux, Moïse Nola, et al.. Detachment of adhered enteropathogenic Escherichia coli cells from polythene fragments immersed in aquatic microcosm using Eucalyptus microcorys extract (Myrtaceae). Current Research in Microbiology and Biotechnology, 2016, 4 (3), pp.847-857. ⟨hal-01392650⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01392650/file/crmb847-857.pdf BibTex
ref_biblio
Patrice Baa-Puyoulet, Nicolas Parisot, Gérard Febvay, Jaime Huerta-Cepas, Augusto F Vellozo, et al.. ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. Database - The journal of Biological Databases and Curation, 2016, pp.1-9. ⟨10.1093/database/baw081⟩. ⟨hal-01352558⟩
Accès au texte intégral et bibtex
https://inria.hal.science/hal-01352558/file/BaaPuyoulet-2016.pdf BibTex
ref_biblio
Jean-Louis Reyss, Arnaud Mangeret, Christelle Courbet, Sylvain Bassot, Gilles Alcalde, et al.. Estimation of sedimentation rates based on the excess of radium 228 in granitic reservoir sediments. Journal of Environmental Radioactivity, 2016, 162-163, pp.8 - 13. ⟨10.1016/j.jenvrad.2016.04.032⟩. ⟨hal-01587405⟩
Accès au bibtex
BibTex
ref_biblio
Thomas G. Jephcott, Catharina Alves-De-Souza, Frank H. Gleason, Floris F. Van Ogtrop, Télesphore Sime-Ngando, et al.. Ecological impacts of parasitic chytrids, syndiniales and perkinsids on populations of marine photosynthetic dinoflagellates. Fungal Ecology, 2016, 19, pp.47-58. ⟨10.1016/j.funeco.2015.03.007⟩. ⟨hal-01253977⟩
Accès au bibtex
BibTex
ref_biblio
Simon Roux, Francois Enault, Viviane Ravet, Jonathan Colombet, Yvan Bettarel, et al.. Analysis of metagenomic data reveals common features of halophilic viral communities across continents. Environmental Microbiology, 2016, 18 (3), pp.889 - 903. ⟨10.1111/1462-2920.13084⟩. ⟨pasteur-01375524⟩
Accès au bibtex
BibTex
ref_biblio
Éric Capo, Didier Debroas, Fabien Arnaud, Typhaine Guillemot, Vincent Bichet, et al.. Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA. Molecular Ecology, 2016, 25 (23), pp.5925-5943. ⟨10.1111/mec.13893⟩. ⟨hal-01568922⟩
Accès au bibtex
BibTex
ref_biblio
Cécile Lepère, Isabelle Domaizon, Mylène Hugoni, Agnès Vellet, Didier Debroas. Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France). Frontiers in Microbiology, 2016, 7 (130), ⟨10.3389/fmicb.2016.00130⟩. ⟨hal-01599386v2⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01599386/file/fmicb-07-00130.pdf BibTex

Communication dans un congrès

ref_biblio
Louis Carles. Devenir de mélanges de pesticides : étude des voies de biodégradation et développement d’une méthode préventive de bioremédiation. 3ème Webinar du RTP EcotoxicoMic, Dec 2016, Lyon, France. ⟨hal-04174095⟩
Accès au bibtex
BibTex
ref_biblio
Louis Carles, Pascale Besse-Hoggan, Muriel Joly, Frédérique Bonnemoy, Isabelle Batisson. Herbicide mixture: biotransformation pathway and toxicity. 9th European Conference on Pesticides and Related Organic Micropollutants in the Environment, 15th Symposium on Chemistry and Fate of Modern Pesticides, Oct 2016, Santiago De Compostela, Espagne. ⟨hal-04174092⟩
Accès au bibtex
BibTex
ref_biblio
Louis Carles, Pascale Besse-Hoggan, Muriel Joly, Armelle Vigouroux, Solange Moréra, et al.. NfsA-FRP nitroreductase enzyme family: a new tool to link biotransformation pathways and environmental contamination by mesotrione, a beta-triketone herbicide. Society of Environmental Toxicology and Chemistry (SETAC), May 2016, Nantes, France. ⟨hal-04174089⟩
Accès au bibtex
BibTex
ref_biblio
Olivier Crouzet, Laurent Consentino, Christelle Marrauld, Clarisse Mallet, Pierre-Alain Maron, et al.. Les microalgues et cyanobactéries des sols : quels apports pour l’écotoxicologie terrestre. 3ème journée Ecotoxicomic, Mar 2016, Valence, France. ⟨hal-01608368⟩
Accès au bibtex
BibTex
ref_biblio
Louis Carles, Pascale Besse-Hoggan, Muriel Joly, Armelle Vigouroux, Solange Moréra, et al.. Biotransformation et toxicité de mélanges de pesticides. 3èmes Journées d'Ecotoxicologie microbienne (EcotoxicoMic), Mar 2016, Valence TGV, France. ⟨hal-04174082⟩
Accès au bibtex
BibTex

Chapitre d'ouvrage

ref_biblio
Juan J Quereda, Martin Sachse, Damien Balestrino, Théodore Grenier, Jennifer Fredlund, et al.. Assessing Vacuolar Escape of Listeria Monocytogenes.. Collin M. Bacterial Pathogenesis, 1535, Humana Press, New York, NY, pp.173-195, 2016, Methods in Molecular Biology, 978-1-4939-6671-4. ⟨10.1007/978-1-4939-6673-8_11⟩. ⟨pasteur-01574133⟩
Accès au texte intégral et bibtex
https://pasteur.hal.science/pasteur-01574133/file/Quereda%20et%20al._editor%20JPC.pdf BibTex
ref_biblio
Jean-François Carrias, Christian C. Amblard, Gilles Bourdier, Telesphore Sime-Ngando. The importance of phagotrophic protists in Lake Pavin. Lac Pavin - History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake., 2016. ⟨hal-01624028⟩
Accès au bibtex
BibTex
ref_biblio
Jean-François Carrias, Christian C. Amblard, Telesphore Sime-Ngando. The significance of transparent exopolymeric particles (TEP) for microorganisms in Lake Pavin.. Lac Pavin - History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake, 2016. ⟨hal-01623860⟩
Accès au bibtex
BibTex
ref_biblio
Anne Catherine Lehours, Guillaume Borrel, Nicole Morel-Desrosiers, Corinne Bardot, Vincent Grossi, et al.. Anaerobic microbial communities and processes involved in the methane cycle in freshwater lakes - a focus on lake Pavin.. Lake Pavin: History, biogeochemistry and sedimentology of a deep meromictic crater lake, 2016. ⟨hal-01623844⟩
Accès au bibtex
BibTex
ref_biblio
Telesphore Sime-Ngando, Yvan Bettarel, Jonathan Colombet, Stéphanie Palesse, Angia Sriram Pradeep Ram, et al.. Lake Pavin: A pioneer site for ecological studies of freshwater viruses. Lake Pavin: History, biogeochemistry and sedimentology of a deep meromictic crater lake, 2016. ⟨hal-01623848⟩
Accès au bibtex
BibTex
ref_biblio
Telesphore Sime-Ngando, Mélanie Gerphagnon, Jonathan Colombet, Marlène M. Jobard, Emilie E. Lefèvre, et al.. Molecular diversity studies in Lake Pavin reveal the ecological importance of parasitic true fungi in the plankton. Lac Pavin - History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake, 2016. ⟨hal-01623857⟩
Accès au bibtex
BibTex
ref_biblio
Gisèle Bronner, Didier Debroas, Francois Enault, Mylène Hugoni, Isabelle Jouan-Dufournel, et al.. Study of microorganisms and virus in aquatic ecosystems by metagenetic and metagenomic approaches.. Lake Pavin: History, biogeochemistry and sedimentology of a deep meromictic crater lake, 2016. ⟨hal-01623825⟩
Accès au bibtex
BibTex
ref_biblio
Léo Chassiot, Emmanuel Chapron, Yannick Miras, Markus J. Schwab, Patrick Albéric, et al.. Lake Pavin Paleolimnology and Event Stratigraphy. Lake Pavin, history, geology, biogeochemistry and sedimentology of a deep meromictic maar lake, Springer, pp.381 - 406, 2016, ⟨10.1007/978-3-319-39961-4_23⟩. ⟨hal-01447131⟩
Accès au texte intégral et bibtex
https://univ-tlse2.hal.science/hal-01447131/file/Chapter_23_Chassiot_et_al_cor.pdf BibTex
ref_biblio
Eric Dugat-Bony, Pierre Peyret, Corinne Biderre-Petit. New insights into the microbial contribution to the chlorine cycle in aquatic ecosystems. Lake Pavin, Springer International Publishing, 2016, 978-3-319-39960-7. ⟨10.1007/978-3-319-39961-4_17⟩. ⟨hal-01533913⟩
Accès au bibtex
BibTex
ref_biblio
Dov Jean-François Corenblit, Bruno Corbara, Johannes Steiger. Biogeomorphic ecosystems within stressful and disturbed environments: a focus on termites and pioneer plants. Johnson E.; Martin Y. A Biogeoscience Approach to Ecosystems, Cambridge University Press, pp.456-474, 2016. ⟨hal-01576286⟩
Accès au bibtex
BibTex

Ouvrages

ref_biblio
Telesphore Sime-Ngando, Pierre Boivin, Emmanuel Chapron, Didier Jezequel, Michel Meybeck. Lac Pavin – History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake. . 2016. ⟨hal-01623853⟩
Accès au bibtex
BibTex

Poster de conférence

ref_biblio
Louis Carles, Pascale Besse-Hoggan, Isabelle Batisson. Reduction of pesticide contamination in agricultural soils: a bioprophylactic approach. 9th European Conference on Pesticides and Related Organic Micropollutants in the Environment, 15th Symposium on Chemistry and Fate of Modern Pesticides, Oct 2016, Santiago de compostela, Spain. ⟨hal-04174310⟩
Accès au bibtex
BibTex
ref_biblio
Louis Carles, Pascale Besse-Hoggan, Isabelle Batisson. Bioprophylaxis - how to reduce pesticide contamination in agricultural soils. International Society for Microbial Ecology (ISME), Aug 2016, Montreal, Canada. ⟨hal-04174307⟩
Accès au bibtex
BibTex
ref_biblio
Bérénice Batut, Clémence Defois, Kevin Gravouil, Cyrielle Gasc, Thomas Eymard, et al.. Analyze your microbiota sequencing data using a Galaxy-based framework References. JOBIM 2016 - Journées Ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. ⟨hal-04763064⟩
Accès au texte intégral et bibtex
https://hal.science/hal-04763064/file/poster.pdf BibTex
ref_biblio
Kevin Gravouil, Corentin Hochart, Bérénice Batut, Clémence Defois, Cyrielle Gasc, et al.. Stratégies de reconstruction de génomes microbiens à partir de métagenomes. JOBIM 2016 - Journées Ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. ⟨hal-04763072⟩
Accès au bibtex
BibTex
ref_biblio
Milka Popova, Maxence Tillier, Dominique Graviou, Diego Morgavi, Gérard Fonty, et al.. Rumen methanogens display species-specific methane production kinetics. 10. Joint Symposium Inra Rowett, Jun 2016, Clermont-Ferrand, France. 2016. ⟨hal-02742850⟩
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02742850/file/Popova_Milka_1.pdf BibTex
ref_biblio
Olivier Crouzet, Christelle Marrauld, Clarisse Mallet, Pierre-Alain Maron, Frédéric Rimet, et al.. The significance of soil microalgae and cyanobacteria to assess pesticide stresses, in agricultural soils. SETAC Europe 26th Annual Meeting, May 2016, Nantes, France. , 2016. ⟨hal-01531658⟩
Accès au texte intégral et bibtex
https://hal.science/hal-01531658/file/16-SETAC-Crouzet.pdf BibTex
ref_biblio
Louis Carles, Pascale Besse-Hoggan, Muriel Joly, Armelle Vigouroux, Solange Moréra, et al.. Mélanges d’herbicides : étude des voies de biotransformation et détermination de la toxicité des métabolites. 46ème congrès du Groupe Français des Pesticides (GFP), May 2016, Versailles, France. ⟨hal-04174301⟩
Accès au bibtex
BibTex
ref_biblio
Louis Carles, Florent Rossi, Muriel Joly, Pascale Besse-Hoggan, Isabelle Batisson, et al.. Biotransformation of three maize herbicides by aquatic microbial communities associated to submerged leaf litter. 4th Biofilm Workshop, Apr 2016, Girona, Spain. ⟨hal-04174298⟩
Accès au bibtex
BibTex

Thèse

ref_biblio
Louis Carles. Devenir de mélanges de pesticides : étude des voies de biodégradation et développement d'une méthode préventive de bioremédiation. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2016. Français. ⟨NNT : 2016CLF22759⟩. ⟨tel-01544582⟩
Accès au texte intégral et bibtex
https://theses.hal.science/tel-01544582/file/CARLES_2016CLF22759.pdf BibTex
ref_biblio
Benoît Keraval. Les métabolismes oxydatifs extracellulaires : une nouvelle vision des processus de minéralisation du carbone organique du sol. Biodiversité et Ecologie. Université Blaise Pascal - Clermont-Ferrand II, 2016. Français. ⟨NNT : 2016CLF22740⟩. ⟨tel-01882691v2⟩
Accès au texte intégral et bibtex
https://theses.hal.science/tel-01882691/file/KERAVAL_2016CLF22740.pdf BibTex
ref_biblio
Damien Mouly. Ecologie de la santé humaine : contribution à l'étude et à la surveillance des épidémies de gastro-entérite aigüe d'origine hydrique. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2016. Français. ⟨NNT : 2016CLF22706⟩. ⟨tel-01479931⟩
Accès au texte intégral et bibtex
https://theses.hal.science/tel-01479931/file/MOULY_2016CLF22706.pdf BibTex
ref_biblio
Nadia Gaci. Archaea methanogènes autochtones du microbiote intestinal de la personne âgée : Etude in vitro de leurs fonctions métaboliques dans l'écosystème colique. Médecine humaine et pathologie. Université d'Auvergne - Clermont-Ferrand I, 2016. Français. ⟨NNT : 2016CLF1MM02⟩. ⟨tel-04496099⟩
Accès au texte intégral et bibtex
https://theses.hal.science/tel-04496099/file/2016CLF1MM02.pdf BibTex