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- Jean-Louis Reyss, Arnaud Mangeret, Christelle Courbet, Sylvain Bassot, Gilles Alcalde, et al.. Estimation of sedimentation rates based on the excess of radium 228 in granitic reservoir sediments. Journal of Environmental Radioactivity, 2016, 162-163, pp.8 - 13. ⟨10.1016/j.jenvrad.2016.04.032⟩. ⟨hal-01587405⟩
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- Thomas G. Jephcott, Catharina Alves-De-Souza, Frank H. Gleason, Floris F. Van Ogtrop, Télesphore Sime-Ngando, et al.. Ecological impacts of parasitic chytrids, syndiniales and perkinsids on populations of marine photosynthetic dinoflagellates. Fungal Ecology, 2016, 19, pp.47-58. ⟨10.1016/j.funeco.2015.03.007⟩. ⟨hal-01253977⟩
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- Simon Roux, Francois Enault, Viviane Ravet, Jonathan Colombet, Yvan Bettarel, et al.. Analysis of metagenomic data reveals common features of halophilic viral communities across continents. Environmental Microbiology, 2016, 18 (3), pp.889 - 903. ⟨10.1111/1462-2920.13084⟩. ⟨pasteur-01375524⟩
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- Éric Capo, Didier Debroas, Fabien Arnaud, Typhaine Guillemot, Vincent Bichet, et al.. Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA. Molecular Ecology, 2016, 25 (23), pp.5925-5943. ⟨10.1111/mec.13893⟩. ⟨hal-01568922⟩
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- Cécile Lepère, Isabelle Domaizon, Mylène Hugoni, Agnès Vellet, Didier Debroas. Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France). Frontiers in Microbiology, 2016, 7 (130), ⟨10.3389/fmicb.2016.00130⟩. ⟨hal-01599386v2⟩
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Communication dans un congrès
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- Louis Carles. Devenir de mélanges de pesticides : étude des voies de biodégradation et développement d’une méthode préventive de bioremédiation. 3ème Webinar du RTP EcotoxicoMic, Dec 2016, Lyon, France. ⟨hal-04174095⟩
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- Louis Carles, Pascale Besse-Hoggan, Muriel Joly, Frédérique Bonnemoy, Isabelle Batisson. Herbicide mixture: biotransformation pathway and toxicity. 9th European Conference on Pesticides and Related Organic Micropollutants in the Environment, 15th Symposium on Chemistry and Fate of Modern Pesticides, Oct 2016, Santiago De Compostela, Espagne. ⟨hal-04174092⟩
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- Louis Carles, Pascale Besse-Hoggan, Muriel Joly, Armelle Vigouroux, Solange Moréra, et al.. NfsA-FRP nitroreductase enzyme family: a new tool to link biotransformation pathways and environmental contamination by mesotrione, a beta-triketone herbicide. Society of Environmental Toxicology and Chemistry (SETAC), May 2016, Nantes, France. ⟨hal-04174089⟩
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- Olivier Crouzet, Laurent Consentino, Christelle Marrauld, Clarisse Mallet, Pierre-Alain Maron, et al.. Les microalgues et cyanobactéries des sols : quels apports pour l’écotoxicologie terrestre. 3ème journée Ecotoxicomic, Mar 2016, Valence, France. ⟨hal-01608368⟩
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- Louis Carles, Pascale Besse-Hoggan, Muriel Joly, Armelle Vigouroux, Solange Moréra, et al.. Biotransformation et toxicité de mélanges de pesticides. 3èmes Journées d'Ecotoxicologie microbienne (EcotoxicoMic), Mar 2016, Valence TGV, France. ⟨hal-04174082⟩
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Chapitre d'ouvrage
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- Juan J Quereda, Martin Sachse, Damien Balestrino, Théodore Grenier, Jennifer Fredlund, et al.. Assessing Vacuolar Escape of Listeria Monocytogenes.. Collin M. Bacterial Pathogenesis, 1535, Humana Press, New York, NY, pp.173-195, 2016, Methods in Molecular Biology, 978-1-4939-6671-4. ⟨10.1007/978-1-4939-6673-8_11⟩. ⟨pasteur-01574133⟩
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- Jean-François Carrias, Christian C. Amblard, Gilles Bourdier, Telesphore Sime-Ngando. The importance of phagotrophic protists in Lake Pavin. Lac Pavin - History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake., 2016. ⟨hal-01624028⟩
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- Jean-François Carrias, Christian C. Amblard, Telesphore Sime-Ngando. The significance of transparent exopolymeric particles (TEP) for microorganisms in Lake Pavin.. Lac Pavin - History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake, 2016. ⟨hal-01623860⟩
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- Anne Catherine Lehours, Guillaume Borrel, Nicole Morel-Desrosiers, Corinne Bardot, Vincent Grossi, et al.. Anaerobic microbial communities and processes involved in the methane cycle in freshwater lakes - a focus on lake Pavin.. Lake Pavin: History, biogeochemistry and sedimentology of a deep meromictic crater lake, 2016. ⟨hal-01623844⟩
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- Telesphore Sime-Ngando, Yvan Bettarel, Jonathan Colombet, Stéphanie Palesse, Angia Sriram Pradeep Ram, et al.. Lake Pavin: A pioneer site for ecological studies of freshwater viruses. Lake Pavin: History, biogeochemistry and sedimentology of a deep meromictic crater lake, 2016. ⟨hal-01623848⟩
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- Telesphore Sime-Ngando, Mélanie Gerphagnon, Jonathan Colombet, Marlène M. Jobard, Emilie E. Lefèvre, et al.. Molecular diversity studies in Lake Pavin reveal the ecological importance of parasitic true fungi in the plankton. Lac Pavin - History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake, 2016. ⟨hal-01623857⟩
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- Gisèle Bronner, Didier Debroas, Francois Enault, Mylène Hugoni, Isabelle Jouan-Dufournel, et al.. Study of microorganisms and virus in aquatic ecosystems by metagenetic and metagenomic approaches.. Lake Pavin: History, biogeochemistry and sedimentology of a deep meromictic crater lake, 2016. ⟨hal-01623825⟩
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- Léo Chassiot, Emmanuel Chapron, Yannick Miras, Markus J. Schwab, Patrick Albéric, et al.. Lake Pavin Paleolimnology and Event Stratigraphy. Lake Pavin, history, geology, biogeochemistry and sedimentology of a deep meromictic maar lake, Springer, pp.381 - 406, 2016, ⟨10.1007/978-3-319-39961-4_23⟩. ⟨hal-01447131⟩
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- Eric Dugat-Bony, Pierre Peyret, Corinne Biderre-Petit. New insights into the microbial contribution to the chlorine cycle in aquatic ecosystems. Lake Pavin, Springer International Publishing, 2016, 978-3-319-39960-7. ⟨10.1007/978-3-319-39961-4_17⟩. ⟨hal-01533913⟩
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- Dov Jean-François Corenblit, Bruno Corbara, Johannes Steiger. Biogeomorphic ecosystems within stressful and disturbed environments: a focus on termites and pioneer plants. Johnson E.; Martin Y. A Biogeoscience Approach to Ecosystems, Cambridge University Press, pp.456-474, 2016. ⟨hal-01576286⟩
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Ouvrages
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- Telesphore Sime-Ngando, Pierre Boivin, Emmanuel Chapron, Didier Jezequel, Michel Meybeck. Lac Pavin – History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake. . 2016. ⟨hal-01623853⟩
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Poster de conférence
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- Louis Carles, Pascale Besse-Hoggan, Isabelle Batisson. Reduction of pesticide contamination in agricultural soils: a bioprophylactic approach. 9th European Conference on Pesticides and Related Organic Micropollutants in the Environment, 15th Symposium on Chemistry and Fate of Modern Pesticides, Oct 2016, Santiago de compostela, Spain. ⟨hal-04174310⟩
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- Louis Carles, Pascale Besse-Hoggan, Isabelle Batisson. Bioprophylaxis - how to reduce pesticide contamination in agricultural soils. International Society for Microbial Ecology (ISME), Aug 2016, Montreal, Canada. ⟨hal-04174307⟩
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- Bérénice Batut, Clémence Defois, Kevin Gravouil, Cyrielle Gasc, Thomas Eymard, et al.. Analyze your microbiota sequencing data using a Galaxy-based framework References. JOBIM 2016 - Journées Ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. ⟨hal-04763064⟩
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- Kevin Gravouil, Corentin Hochart, Bérénice Batut, Clémence Defois, Cyrielle Gasc, et al.. Stratégies de reconstruction de génomes microbiens à partir de métagenomes. JOBIM 2016 - Journées Ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. ⟨hal-04763072⟩
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- Milka Popova, Maxence Tillier, Dominique Graviou, Diego Morgavi, Gérard Fonty, et al.. Rumen methanogens display species-specific methane production kinetics. 10. Joint Symposium Inra Rowett, Jun 2016, Clermont-Ferrand, France. 2016. ⟨hal-02742850⟩
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- Olivier Crouzet, Christelle Marrauld, Clarisse Mallet, Pierre-Alain Maron, Frédéric Rimet, et al.. The significance of soil microalgae and cyanobacteria to assess pesticide stresses, in agricultural soils. SETAC Europe 26th Annual Meeting, May 2016, Nantes, France. , 2016. ⟨hal-01531658⟩
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- Louis Carles, Pascale Besse-Hoggan, Muriel Joly, Armelle Vigouroux, Solange Moréra, et al.. Mélanges d’herbicides : étude des voies de biotransformation et détermination de la toxicité des métabolites. 46ème congrès du Groupe Français des Pesticides (GFP), May 2016, Versailles, France. ⟨hal-04174301⟩
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- Louis Carles, Florent Rossi, Muriel Joly, Pascale Besse-Hoggan, Isabelle Batisson, et al.. Biotransformation of three maize herbicides by aquatic microbial communities associated to submerged leaf litter. 4th Biofilm Workshop, Apr 2016, Girona, Spain. ⟨hal-04174298⟩
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Thèse
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- Louis Carles. Devenir de mélanges de pesticides : étude des voies de biodégradation et développement d'une méthode préventive de bioremédiation. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2016. Français. ⟨NNT : 2016CLF22759⟩. ⟨tel-01544582⟩
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- Benoît Keraval. Les métabolismes oxydatifs extracellulaires : une nouvelle vision des processus de minéralisation du carbone organique du sol. Biodiversité et Ecologie. Université Blaise Pascal - Clermont-Ferrand II, 2016. Français. ⟨NNT : 2016CLF22740⟩. ⟨tel-01882691v2⟩
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- Damien Mouly. Ecologie de la santé humaine : contribution à l'étude et à la surveillance des épidémies de gastro-entérite aigüe d'origine hydrique. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2016. Français. ⟨NNT : 2016CLF22706⟩. ⟨tel-01479931⟩
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- Nadia Gaci. Archaea methanogènes autochtones du microbiote intestinal de la personne âgée : Etude in vitro de leurs fonctions métaboliques dans l'écosystème colique. Médecine humaine et pathologie. Université d'Auvergne - Clermont-Ferrand I, 2016. Français. ⟨NNT : 2016CLF1MM02⟩. ⟨tel-04496099⟩
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