Publications HAL

Article dans une revue

ref_biblio
Louis Carles, Florent Rossi, Pascale Besse-Hoggan, Christelle Blavignac, Martin Leremboure, et al.. Nicosulfuron Degradation by an Ascomycete Fungus Isolated From Submerged Alnus Leaf Litter. Frontiers in Microbiology, Frontiers Media, 2018, 9, pp.3167. ⟨10.3389/fmicb.2018.03167⟩. ⟨hal-02195481⟩
Accès au bibtex
BibTex
ref_biblio
Alexandre Bazin, Didier Debroas, Engelbert Mephu Nguifo. A De Novo Robust Clustering Approach for Amplicon-Based Sequence Data. Journal of Computational Biology, Mary Ann Liebert, 2018. ⟨hal-01990353⟩
Accès au bibtex
BibTex
ref_biblio
Cecilia Rad-Menéndez, Mélanie Gerphagnon, Andrea Garvetto, Paola Arce, Yacine Badis, et al.. Rediscovering Zygorhizidium affluens Canter: Molecular Taxonomy, Infectious Cycle, and Cryopreservation of a Chytrid Infecting the Bloom-Forming Diatom Asterionella formosa. Applied and Environmental Microbiology, American Society for Microbiology, 2018, 84 (23). ⟨hal-01981931⟩
Accès au bibtex
BibTex
ref_biblio
Nabil Majdi, Nicolas Hette-Tronquart, Etienne Auclair, Alexandre Bec, Tiphaine Chouvelon, et al.. There's no harm in having too much: A comprehensive toolbox of methods in trophic ecology. Food Webs, Elsevier, 2018, 17, pp.e00100-. ⟨10.1016/j.fooweb.2018.e00100⟩. ⟨hal-01926513⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01926513/file/FOOWEB_100.pdf BibTex
ref_biblio
Gabriel Carvalho, Damien Balestrino, Christiane Forestier, Jean-Denis Mathias. How do environment-dependent switching rates between susceptible and persister cells affect the dynamics of biofilms faced with antibiotics?. npj Biofilms and Microbiomes, [London?]: Springer Nature published in partnership with Nanyang Technological University, 2018, 4 (1), ⟨10.1038/s41522-018-0049-2⟩. ⟨hal-01739194⟩
Accès au bibtex
BibTex
ref_biblio
Jean-Pierre Bedos, Emmanuelle Varon, Raphaël Porcher, Pierre Asfar, Yves Le Tulzo, et al.. Host–pathogen interactions and prognosis of critically ill immunocompetent patients with pneumococcal pneumonia: the nationwide prospective observational STREPTOGENE study. Intensive Care Medicine, Springer Verlag, 2018, 44 (12), pp.2162-2173. ⟨10.1007/s00134-018-5444-x⟩. ⟨hal-02305043⟩
Accès au bibtex
BibTex
ref_biblio
Jeremy Lafolie, André Labbé, Anne Sophie l'Honneur, Fouad Madhi, Bruno Pereira, et al.. Assessment of blood enterovirus PCR testing in paediatric populations with fever without source, sepsis-like disease, or suspected meningitis: a prospective, multicentre, observational cohort study. The Lancet Infectious Diseases, New York, NY : Elsevier Science ; The Lancet Pub. Group, 2001-, 2018, 18 (12), pp.1385-1396. ⟨hal-01984194⟩
Accès au bibtex
BibTex
ref_biblio
René Robert, Denis Frasca, Bertrand Souweine, Jean-François Augusto, Carole Philipponnet, et al.. Histologically proven acute tubular necrosis in a series of 27 ICU patients. Journal of Critical Care, WB Saunders, 2018, 48, pp.130-134. ⟨10.1016/j.jcrc.2018.08.029⟩. ⟨hal-02305050⟩
Accès au bibtex
BibTex
ref_biblio
Yoann Seeleuthner, Samuel Mondy, Vincent Lombard, Quentin Carradec, Eric Pelletier, et al.. Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans. Nature Communications, Nature Publishing Group, 2018, 9, pp.310. ⟨10.1038/s41467-017-02235-3⟩. ⟨hal-01771839⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01771839/file/2018_%20Seeleuthner_Nature%20Communications_1.pdf BibTex
ref_biblio
Thomas Ruiz, Alexandre Bec, Michael Danger, Apostolos-Manuel Koussoroplis, Jean-Pierre Aguer, et al.. A microcalorimetric approach for investigating stoichiometric constraints on the standard metabolic rate of a small invertebrate. Ecology Letters, Wiley, 2018, 21 (11), pp.1714 - 1722. ⟨10.1111/ele.13137⟩. ⟨hal-01913839⟩
Accès au bibtex
BibTex
ref_biblio
Ammini Parvathi, Vijayan Jasna, Sreekumar Aparna, Angia Pradeep Ram, Vijaya Aswathy, et al.. High Incidence of Lysogeny in the Oxygen Minimum Zones of the Arabian Sea (Southwest Coast of India). Viruses, MDPI, 2018, 10 (11), pp.588. ⟨hal-01981930⟩
Accès au bibtex
BibTex
ref_biblio
F. Morio, S. Valot, A. Laude, G. Desoubeaux, N. Argy, et al.. Evaluation of a new multiplex PCR assay (ParaGENIE G-Amoeba Real-Time PCR kit) targeting Giardia intestinalis, Entamoeba histolytica and Entamoeba dispar/Entamoeba moshkovskii from stool specimens: evidence for the limited performances of microscopy-based approach for amoeba species identification. Clinical Microbiology and Infection, Elsevier for the European Society of Clinical Microbiology and Infectious Diseases, 2018, 24 (11), pp.1205-1209. ⟨10.1016/j.cmi.2018.02.007⟩. ⟨hal-01987706⟩
Accès au bibtex
BibTex
ref_biblio
Evanthia Mantzouki, James Campbell, Emiel van Loon, Petra Visser, Iosif Konstantinou, et al.. A European Multi Lake Survey dataset of environmental variables, phytoplankton pigments and cyanotoxins. Scientific Data , Nature Publishing Group, 2018, 5, ⟨10.1038/sdata.2018.226⟩. ⟨hal-01919388⟩
Accès au bibtex
BibTex
ref_biblio
Florent Rossi, Stéphane Pesce, Clarisse Mallet, Christelle Margoum, Arnaud Chaumot, et al.. Interactive Effects of Pesticides and Nutrients on Microbial Communities Responsible of Litter Decomposition in Streams. Frontiers in Microbiology, Frontiers Media, 2018, 9, pp.13. ⟨10.3389/fmicb.2018.02437⟩. ⟨hal-01906322⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01906322/file/fmicb-09-02437.pdf BibTex
ref_biblio
Valentin Greigert, Ahmed Abou-Bacar, Julie Brunet, Céline Nourrisson, Alexander Pfaff, et al.. Human intestinal parasites in Mahajanga, Madagascar: The kingdom of the protozoa. PLoS ONE, Public Library of Science, 2018, 13 (10), pp.e0204576. ⟨10.1371/journal.pone.0204576⟩. ⟨hal-02150619⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-02150619/file/2018_Mada.pdf BibTex
ref_biblio
O. Lesens, T. Ferry, E. Forestier, E. Botelho-Nevers, P. Pavese, et al.. Should we expand the indications for the DAIR (debridement, antibiotic therapy, and implant retention) procedure for Staphylococcus aureus prosthetic joint infections? A multicenter retrospective study. European Journal of Clinical Microbiology and Infectious Diseases, Springer Verlag, 2018, 37 (10), pp.1949-1956. ⟨10.1007/s10096-018-3330-7⟩. ⟨hal-02063743⟩
Accès au bibtex
BibTex
ref_biblio
Laurent Mandelbrot, Francois Kieffer, Rémi Sitta, Hélène Laurichesse-Delmas, Anne-Gaëlle Cordier, et al.. Prenatal therapy with pyrimethamine + sulfadiazine vs spiramycin to reduce placental transmission of toxoplasmosis: a multicenter, randomized trial. American Journal of Obstetrics and Gynecology, Elsevier, 2018, 219 (4), pp.386.e1-386.e9. ⟨10.1016/j.ajog.2018.05.031⟩. ⟨hal-01987714⟩
Accès au bibtex
BibTex
ref_biblio
Rainer Kurmayer, Shoko Ueki, Qinglu Zeng, Andrew Millard, Kevin Zhong, et al.. A New Freshwater Cyanosiphovirus Harboring Integrase. Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.02204⟩. ⟨hal-02916338⟩
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02916338/file/Zhong_FiM_2018.pdf BibTex
ref_biblio
Corinne Biderre-Petit, Najwa Taib, Hélène Gardon, Corentin Hochart, Didier Debroas. New insights into the pelagic microorganisms involved in the methane cycle in the meromictic Lake Pavin through metagenomics. FEMS Microbiology Ecology, Wiley-Blackwell, 2018, ⟨10.1093/femsec/fiy183⟩. ⟨hal-01984730⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01984730/file/Biderre-Petit%202018%20FEMS.pdf BibTex
ref_biblio
Damien Costa, Romy Razakandrainibe, Marc Sautour, Stéphane Valot, Louise Basmaciyan, et al.. Human cryptosporidiosis in immunodeficient patients in France (2015–2017). Experimental Parasitology, Elsevier, 2018, 192, pp.108-112. ⟨10.1016/j.exppara.2018.08.001⟩. ⟨hal-02902544⟩
Accès au bibtex
BibTex
ref_biblio
Andreza Rochelle, Vale Morais, André Silva, Andreza Rochelle Do Vale Morais, André Leandro Silva, et al.. In-vitro and in-vivo antileishmanial activity of inexpensive Amphotericin B formulations: Heated Amphotericin B and Amphotericin B-loaded microemulsion. Experimental Parasitology, Elsevier, 2018, 192, pp.85-92. ⟨10.1016/j.exppara.2018.07.017⟩. ⟨hal-02370461⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-02370461/file/Do%20Vale%20Morais%20et%20al%20Experimental%20Parasitology.pdf BibTex
ref_biblio
C. Imbert, C. Hennequin, A. Coste. One fungus, several microbes. Journal de Mycologie Médicale, Elsevier Masson, 2018, 28 (3), pp.413. ⟨hal-02057141⟩
Accès au bibtex
BibTex
ref_biblio
Marina Seder-Colomina, Arnaud Mangeret, Lucie Stetten, Pauline Merrot, Olivier Diez, et al.. Carbonate Facilitated Mobilization of Uranium from Lacustrine Sediments under Anoxic Conditions. Environmental Science & Technology, American Chemical Society, 2018, 52 (17), pp.9615-9624. ⟨10.1021/acs.est.8b01255⟩. ⟨hal-02343450⟩
Accès au bibtex
BibTex
ref_biblio
Radhe Shyam, Nicolas Charbonnel, Aurélie Job, Christelle Blavignac, Christiane Forestier, et al.. 1,2,3-Triazolium-Based Cationic Amphipathic Peptoid Oligomers Mimicking Antimicrobial Helical Peptides. ChemMedChem, Wiley-VCH Verlag, 2018, 13 (15), pp.1513 - 1516. ⟨10.1002/cmdc.201800273⟩. ⟨hal-01875150⟩
Accès au bibtex
BibTex
ref_biblio
L Lambert-Niclot, C Grude, L. Chaix, L Charpentier, C Reigadas, et al.. Emerging resistance mutations in PI-naive patients failing an atazanavir-based regimen (ANRS multicentre observational study). Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2018, 73 (8), pp.2147 - 2151. ⟨10.1093/jac/dky142⟩. ⟨hal-01899927⟩
Accès au bibtex
BibTex
ref_biblio
J. Keshri, A. Pradeep Ram, P. Nana, T. Sime-Ngando. Taxonomical Resolution and Distribution of Bacterioplankton Along the Vertical Gradient Reveals Pronounced Spatiotemporal Patterns in Contrasted Temperate Freshwater Lakes. Microbial Ecology, Springer Verlag, 2018, 76 (2), pp.372-386. ⟨10.1007/s00248-018-1143-y⟩. ⟨hal-02388988⟩
Accès au bibtex
BibTex
ref_biblio
Claire Hennequin, Alexandre Chlilek, Racha Beyrouthy, Richard Bonnet, Frédéric Robin. Diversity of DHA-1-encoding plasmids in Klebsiella pneumoniae isolates from 16 French hospitals. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2018, 73 (11), pp.2981-2989. ⟨10.1093/jac/dky285⟩. ⟨hal-01899133⟩
Accès au bibtex
BibTex
ref_biblio
Yvan Bettarel, Marine Combe, Antoinette Adingra, Awa Ndiaye, Thierry Bouvier, et al.. Hordes of Phages in the Gut of the Tilapia Sarotherodon melanotheron. Scientific Reports, Nature Publishing Group, 2018, 8 (1), ⟨10.1038/s41598-018-29643-9⟩. ⟨hal-01892916⟩
Accès au bibtex
BibTex
ref_biblio
Sergey Melnikov, Keith Rivera, Denis Ostapenko, Arthur Makarenko, Neil Sanscrainte, et al.. Error-prone protein synthesis in parasites with the smallest eukaryotic genome. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2018, 115 (27), pp.E6245 - E6253. ⟨10.1073/pnas.1803208115⟩. ⟨hal-01867872⟩
Accès au bibtex
BibTex
ref_biblio
Louis Carles, Muriel Joly, Frédérique Bonnemoy, Martin Leremboure, Florence Donnadieu, et al.. Biodegradation and toxicity of a maize herbicide mixture: mesotrione, nicosulfuron and S-metolachlor. Journal of Hazardous Materials, Elsevier, 2018, 354, pp.42 - 53. ⟨10.1016/j.jhazmat.2018.04.045⟩. ⟨hal-01785204⟩
Accès au bibtex
BibTex
ref_biblio
Tahereh Rezaei Riabi, Hamed Mirjalali, Ali Haghighi, Mohammad Rostami Nejad, Mohammad Pourhoseingholi, et al.. Genetic diversity analysis of Blastocystis subtypes from both symptomatic and asymptomatic subjects using a barcoding region from the 18S rRNA gene. Infection, Genetics and Evolution, Elsevier, 2018, 61, pp.119-126. ⟨hal-01987678⟩
Accès au bibtex
BibTex
ref_biblio
Kaarle Parikka, Stéphan Jacquet, Jonathan Colombet, Damien Guillaume, Marc Le Romancer. Abundance and observations of thermophilic microbial and viral communities in submarine and terrestrial hot fluid systems of the French Southern and Antarctic Lands. Polar Biology, Springer Verlag, 2018, 41 (7), pp.1335 - 1352. ⟨10.1007/s00300-018-2288-3⟩. ⟨hal-01931282⟩
Accès au bibtex
BibTex
ref_biblio
Bjorn Grüning, Ryan Dale, Andreas Sjödin, Brad Chapman, Jillian Rowe, et al.. Bioconda: sustainable and comprehensive software distribution for the life sciences. Nature Methods, Nature Publishing Group, 2018, 15 (7), pp.475-476. ⟨hal-01990453⟩
Accès au bibtex
BibTex
ref_biblio
Claire Hennequin, Viviane Ravet, Frédéric Robin. Plasmids carrying DHA-1 β-lactamases. European Journal of Clinical Microbiology and Infectious Diseases, Springer Verlag, 2018, 37 (7), pp.1197 - 1209. ⟨10.1007/s10096-018-3231-9⟩. ⟨hal-01899129⟩
Accès au bibtex
BibTex
ref_biblio
Kaarle Parikka, Stéphan Jacquet, Jonathan Colombet, Damien Guillaume, Marc Le Romancer. Abundance and observations of thermophilic microbial and viral communities in submarine and terrestrial hot fluid systems of the French Southern and Antarctic Lands. Polar Biology, Springer Verlag, 2018, 41 (7), pp.1335-1352. ⟨10.1007/s00300-018-2288-3⟩. ⟨hal-02916340⟩
Accès au bibtex
BibTex
ref_biblio
Jean-Francois Timsit, Mark Rupp, Emilio Bouza, Vineet Chopra, Tarja Kärpänen, et al.. A state of the art review on optimal practices to prevent, recognize, and manage complications associated with intravascular devices in the critically ill. Intensive Care Medicine, Springer Verlag, 2018, 44 (6), pp.742-759. ⟨10.1007/s00134-018-5212-y⟩. ⟨hal-02155542⟩
Accès au bibtex
BibTex
ref_biblio
A. Coste, C. Imbert, C. Hennequin. Editorial. Journal de Mycologie Médicale, Elsevier Masson, 2018, 28 (2), pp.235. ⟨hal-02057110⟩
Accès au bibtex
BibTex
ref_biblio
Christian Farinetto, Franck Maunoury, Stephane Ruckly, Jeremy Guenezan, Jean-Christophe Lucet, et al.. Cost-effectiveness analysis of chlorhexidine-alcohol versus povidone iodine-alcohol solution in the prevention of intravascular-catheter-related bloodstream infections in France. PLoS ONE, Public Library of Science, 2018, 13 (5), ⟨10.1371/journal.pone.0197747⟩. ⟨hal-01802878⟩
Accès au bibtex
BibTex
ref_biblio
Bérénice Batut, Kevin Gravouil, Clemence Defois, Saskia Hiltemann, Jean-François Brugère, et al.. ASaiM: a Galaxy-based framework to analyze microbiota data. GigaScience, BioMed Central, 2018, 7 (6), pp.1-7. ⟨10.1093/gigascience/giy057⟩. ⟨hal-01990448⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01990448/file/2018_BATUT_GigaScience_1.pdf BibTex
ref_biblio
Bérénice Batut, Kevin Gravouil, Clemence Defois, Saskia Hiltemann, Jean-François Brugère, et al.. ASaiM: a Galaxy-based framework to analyze microbiota data. GigaScience, BioMed Central, 2018, 7 (6). ⟨hal-01987682⟩
Accès au bibtex
BibTex
ref_biblio
Flore Amat, Chloé Plantard, Aurelien Mulliez, Isabelle Petit, Emmanuelle Rochette, et al.. RSV-hRV co-infection is a risk factor for recurrent bronchial obstruction and early sensitization 3 years after bronchiolitis. Journal of Medical Virology, Wiley-Blackwell, 2018, 90 (5), pp.867-872. ⟨10.1002/jmv.25037⟩. ⟨hal-01984183⟩
Accès au bibtex
BibTex
ref_biblio
François Barbier, Sébastien Bailly, Carole Schwebel, Laurent Papazian, Élie Azoulay, et al.. Infection-related ventilator-associated complications in ICU patients colonised with extended-spectrum beta-lactamase-producing Enterobacteriaceae. Intensive Care Medicine, Springer Verlag, 2018, 44 (5), pp.616-626. ⟨10.1007/s00134-018-5154-4⟩. ⟨hal-01847386⟩
Accès au bibtex
BibTex
ref_biblio
Bashar Ibrahim, Ksenia Arkhipova, Arno Andeweg, Susana Posada-Céspedes, François Enault, et al.. Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting. Viruses, MDPI, 2018, 10 (5), pp.256. ⟨10.3390/v10050256⟩. ⟨hal-01964743⟩
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-01964743/file/viruses-10-00256.pdf BibTex
ref_biblio
François Barbier, Sébastien Bailly, Carole Schwebel, Laurent Papazian, Élie Azoulay, et al.. Infection-related ventilator-associated complications in ICU patients colonised with extended-spectrum β-lactamase-producing Enterobacteriaceae. Intensive Care Medicine, Springer Verlag, 2018, 44 (5), pp.616-626. ⟨hal-01977498⟩
Accès au bibtex
BibTex
ref_biblio
Chrétien Djimeli, Antoine Arfao, O. V. Noah Ewoti, Vivien Rossi, Ernest Lango-Yaya, et al.. ASSESSMENT OF THE ADSORPTION OF AEROMONAS HYDROPHILA ON POLYTHENE IN SODIUM HYPOCHLORITE AND HYDROGEN PEROXIDE TREATED WATER. Journal of Water and Environmental Sciences, 2018. ⟨hal-01982191⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01982191/file/LontsiDjimelietal2018.pdf BibTex
ref_biblio
Charlotte Charpentier, Isabelle Malet, Elisabeth André-Garnier, Alexandre Storto, Laurence Bocket, et al.. Phenotypic analysis of HIV-1 E157Q integrase polymorphism and impact on virological outcome in patients initiating an integrase inhibitor-based regimen. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2018, 73 (4), pp.1039-1044. ⟨10.1093/jac/dkx511⟩. ⟨hal-01984177⟩
Accès au bibtex
BibTex
ref_biblio
Evelien M. Adriaenssens, Johannes Wittmann, Jens Kuhn, Dann Turner, Matthew Sullivan, et al.. Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee. Archives of Virology, Springer Verlag, 2018, 163 (4), pp.1125-1129. ⟨10.1007/s00705-018-3723-z⟩. ⟨pasteur-01977346⟩
Accès au bibtex
BibTex
ref_biblio
Laurianne Paris, Hicham El Alaoui, Frédéric Delbac, Marie Diogon. Effects of the gut parasite Nosema ceranae on honey bee physiology and behavior. Current Opinion in Insect Science, Elsevier, 2018, 26, pp.149-154. ⟨hal-01987667⟩
Accès au bibtex
BibTex
ref_biblio
Yvan Bettarel, Sebastien Halary, Jean-Christophe Auguet, Thanh Chi Mai, Ngoc Van Bui, et al.. Corallivory and the microbial debacle in two branching scleractinians. ISME Journal, Nature Publishing Group, 2018, 12 (4), pp.1109--1126. ⟨10.1038/s41396-017-0033-5⟩. ⟨hal-01826712⟩
Accès au bibtex
BibTex
ref_biblio
Heli Harvala, Eeva Broberg, Kimberley Benschop, Natasa Berginc, Shamez Ladhani, et al.. Recommendations for enterovirus diagnostics and characterisation within and beyond Europe. Journal of Clinical Virology, Elsevier, 2018, 101, pp.11-17. ⟨hal-01984200⟩
Accès au bibtex
BibTex
ref_biblio
Marie Desnos-Ollivier, Victoria Bórmida, Philippe Poirier, Céline Nourrisson, Dinorah Pan, et al.. Population Structure of Candida parapsilosis: No Genetic Difference Between French and Uruguayan Isolates Using Microsatellite Length Polymorphism. Mycopathologia, Springer Verlag, 2018, 183 (2), pp.381 - 390. ⟨10.1007/s11046-017-0224-7⟩. ⟨pasteur-01854076⟩
Accès au bibtex
BibTex
ref_biblio
Marc Rollin, Romain Coulaud, Michael Danger, Benedicte Sohm, Justine Flayac, et al.. Additive effect of calcium depletion and low resource quality on Gammarus fossarum (Crustacea, Amphipoda) life history traits. Environmental Science and Pollution Research, Springer Verlag, 2018, 25 (12), pp.11264 - 11280. ⟨10.1007/s11356-017-9390-x⟩. ⟨hal-01917263⟩
Accès au bibtex
BibTex
ref_biblio
Vijayan Jasna, Angia Sriram Pradeep Ram, Ammini Parvathi, Télesphore Sime-Ngando, Adelaide Almeida. Differential impact of lytic viruses on prokaryotic morphopopulations in a tropical estuarine system (Cochin estuary, India). PLoS ONE, Public Library of Science, 2018, 13 (3), pp.e0194020. ⟨hal-01981935⟩
Accès au bibtex
BibTex
ref_biblio
Paul Alain Nana, Zéphyrin Fokam, Bernard Vigues, Geneviève Bricheux, GidÉon Ajeagah Aghaindum, et al.. Morphology and infraciliature of two new earthworm ciliates, Hoplitophrya polymorphus sp. nov. and Anoplophrya simplex sp. nov. (Ciliophora: Oligohymenophorea: Astomatia). Zootaxa, Magnolia Press, 2018, 4392 (1), ⟨10.11646/zootaxa.4392.1.9⟩. ⟨hal-01727084⟩
Accès au bibtex
BibTex
ref_biblio
Bruno Corbara, Pablo Servigne, Alain Dejean, James Carpenter, Jérôme Orivel. A mimetic nesting association between a timid social wasp and an aggressive arboreal ant. Comptes Rendus Biologies, Elsevier Masson, 2018, 341 (3), pp.182-188. ⟨10.1016/j.crvi.2018.01.006⟩. ⟨hal-02322770⟩
Accès au bibtex
BibTex
ref_biblio
Damien Bouvier, Thomas Duret, Paul Rouzaire, Matthieu Jabaudon, Marion Rouzaire, et al.. Method validation of a set of 12 GEM® Premier™ 4000 blood gas analyzers for point-of-care testing in a university teaching hospital. Practical Laboratory Medicine, Elsevier, 2018, 10, pp.21 - 33. ⟨10.1016/j.plabm.2017.12.001⟩. ⟨hal-01919305⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01919305/file/10.1515%3Acclm-2015-0771.pdf BibTex
ref_biblio
Céline Nourrisson, Magali Vidal-Roux, Sophie Cayot, Christine Jacomet, Charlotte Bothorel, et al.. Invasive Infections Caused by Nannizziopsis spp. Molds in Immunocompromised Patients. Emerging Infectious Diseases, Centers for Disease Control and Prevention, 2018, 24 (3), pp.549-552. ⟨hal-01987703⟩
Accès au bibtex
BibTex
ref_biblio
Maxime Bisseux, Jonathan Colombet, Audrey Mirand, Anne-Marie Roque-Afonso, Florence Abravanel, et al.. Monitoring human enteric viruses in wastewater and relevance to infections encountered in the clinical setting: a one-year experiment in central France, 2014 to 2015. Eurosurveillance, European Centre for Disease Prevention and Control, 2018, 23 (7), ⟨10.2807/1560-7917.ES.2018.23.7.17-00237⟩. ⟨hal-01734503⟩
Accès au bibtex
BibTex
ref_biblio
Eléonore Frouin, Méline Bes, Bernard Ollivier, Marianne Quéméneur, Anne Postec, et al.. Diversity of rare and abundant prokaryotic phylotypes in the Prony hydrothermal field and comparison with other serpentinite-hosted ecosystems. Frontiers in Microbiology, Frontiers Media, 2018, 9, ⟨10.3389/fmicb.2018.00102⟩. ⟨hal-01734508⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01734508/file/fmicb-09-00102.pdf BibTex
ref_biblio
Céline Lavergne, Mylène Hugoni, Cédric Hubas, Didier Debroas, Christine Dupuy, et al.. Diel rhythm does not shape the vertical distribution of bacterial and archaeal 16S rRNA transcript diversity in intertidal sediments: a mesocosm study Running title: Diel activities of benthic Bacteria and Archaea. Microbial Ecology, Springer Verlag, 2018, 75 (2), pp.364-374. ⟨10.1007/s00248-017-1048-1⟩. ⟨hal-01573359⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01573359/file/2-Lavergneetal_2017-MECO%2Cauthorversion%2CHAL.pdf BibTex
ref_biblio
P. Duval, C. Chatelard-Chauvin, C. Gayard, E. Rifa, P. Bouchard, et al.. Changes in biochemical and sensory parameters in industrial blue-veined cheeses in different packaging. International Dairy Journal, Elsevier, 2018, 77, pp.89-99. ⟨10.1016/j.idairyj.2016.10.004⟩. ⟨hal-01987736⟩
Accès au bibtex
BibTex
ref_biblio
C. Soulié, L. Morand-Joubert, J. Cottalorda, C. Charpentier, P. Bellecave, et al.. Performance of genotypic algorithms for predicting tropism for HIV-1 CRF01_AE recombinant. Journal of Clinical Virology, Elsevier, 2018, 99-100, pp.57-60. ⟨hal-01984179⟩
Accès au bibtex
BibTex
ref_biblio
Myriam Phélippé, Rémy Coat, Camille Le Bras, Lorene Perrochaud, Eric Peyretaillade, et al.. Characterization of an easy-to-use method for the routine analysis of the central metabolism using an affordable low-resolution GC–MS system: application to Arthrospira platensis. Analytical and Bioanalytical Chemistry, Springer Verlag, 2018, 410 (4), pp.1341-1361. ⟨hal-01987689⟩
Accès au bibtex
BibTex
ref_biblio
Erwan Salaün, Laura Sportouch, Pierre-Antoine Barral, Sandrine Hubert, Cécile Lavoute, et al.. Diagnosis of Infective Endocarditis After TAVR. JACC: Cardiovascular Imaging, Elsevier/American College of Cardiology, 2018, 11 (1), pp.143-146. ⟨10.1016/j.jcmg.2017.05.016⟩. ⟨hal-02479817⟩
Accès au bibtex
BibTex
ref_biblio
Pierre Deharo, Laurence Camoin, Jacques Quilici, Jean Louis Bonnet, Thomas Cuisset. REPLY: De-Escalation of the P2Y12 Inhibitor After Acute Coronary Syndromes According to On-Treatment Platelet Reactivity A Promising Step of Enormous Magnitude That Should Be Explored. JACC: Cardiovascular Interventions, Elsevier/American College of Cardiology, 2018, 11 (5), pp.508-509. ⟨10.1016/j.jcin.2018.01.256⟩. ⟨hal-01780667⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01780667/file/1-s2.0-S1936879818304278-main.pdf BibTex
ref_biblio
Gideon Aghaindum Ajeagah, Gertrude Estelle Yogback, Siméon Tchakonté, Paul Alain Nana, Geneviève Bricheux, et al.. Biomorphology of crustaceans in a unpolluted stream in the equatorial forest of Cameroon. Journal of Water Science / Revue des Sciences de l'Eau, Lavoisier (Hermes Science Publications), 2018, 31 (1), ⟨10.7202/1047051ar⟩. ⟨hal-01924232⟩
Accès au bibtex
BibTex
ref_biblio
E. Azoulay, V. Lemiale, B. Mourvillier, M. Garrouste-Orgeas, C. Schwebel, et al.. Management and outcomes of acute respiratory distress syndrome patients with and without comorbid conditions. Intensive Care Medicine, Springer Verlag, 2018, 44 (7), pp.1050--1060. ⟨hal-02003818⟩
Accès au bibtex
BibTex
ref_biblio
Johan Panek, Laurianne Paris, Diane Roriz, Anne Mone, Aurore Dubuffet, et al.. Impact of the microsporidian Nosema ceranae on the gut epithelium renewal of the honeybee, Apis mellifera. Journal of Invertebrate Pathology, Elsevier, 2018, 159, pp.121-128. ⟨10.1016/j.jip.2018.09.007⟩. ⟨hal-02360067⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-02360067/file/Accepted%20manuscript.pdf BibTex
ref_biblio
A.S. Pradeep Ram, Xavier Mari, J. Brune, J.P. Torréton, V.T. Chu, et al.. Bacterial-viral interactions in the sea surface microlayer of a black carbon-dominated tropical coastal ecosystem (Halong Bay, Vietnam). Elementa: Science of the Anthropocene, University of California Press, 2018, 6 (1), pp.13. ⟨10.1525/elementa.276⟩. ⟨hal-01718181⟩
Accès au texte intégral et bibtex
https://hal.sorbonne-universite.fr/hal-01718181/file/276-4654-1-PB.pdf BibTex
ref_biblio
Matilda Haraldsson, Mélanie Gerphagnon, Pauline Bazin, Jonathan Colombet, Samuele Tecchio, et al.. Microbial parasites make cyanobacteria blooms less of a trophic dead end than commonly assumed. ISME Journal, Nature Publishing Group, 2018, 12, pp.1008-1020. ⟨10.1038/s41396-018-0045-9⟩. ⟨hal-01981933⟩
Accès au bibtex
BibTex
ref_biblio
Pierre E. Galand, Olivier Pereira, Corentin Hochart, Jean Christophe Auguet, Didier Debroas. A strong link between marine microbial community composition and function challenges the idea of functional redundancy. ISME Journal, Nature Publishing Group, 2018, 12 (10), pp.2470-2478. ⟨10.1038/s41396-018-0158-1⟩. ⟨hal-02002181⟩
Accès au bibtex
BibTex
ref_biblio
Jeremy Lafolie, André Labbé, Anne Sophie L'honneur, Fouad Madhi, Bruno Pereira, et al.. Assessment of blood enterovirus PCR testing in paediatric populations with fever without source, sepsis-like disease, or suspected meningitis: a prospective, multicentre, observational cohort study. The Lancet Infectious Diseases, New York, NY : Elsevier Science ; The Lancet Pub. Group, 2001-, 2018, 18 (12), pp.1385-1396. ⟨10.1016/S1473-3099(18)30479-1⟩. ⟨hal-02271158⟩
Accès au texte intégral et bibtex
https://hal.sorbonne-universite.fr/hal-02271158/file/Lafolie%20et%20al.%20-%202018%20-%20Assessment%20of%20blood%20enterovirus%20PCR%20testing%20in%20pae.pdf BibTex
ref_biblio
Marie-Elodie Perga, Michael Danger, Stanislas Dubois, Clémentine Fritsch, Cedric Gaucherel, et al.. Forces, failles et opportunités de la recherche française en écologie trophique. Comptes Rendus Biologies, Elsevier Masson, 2018, 341 (6), pp.301-314. ⟨10.1016/j.crvi.2018.05.001⟩. ⟨hal-01930387⟩
Accès au bibtex
BibTex
ref_biblio
Aude Jary, Valentin Leducq, Romain Palich, Adélie Gothland, Diane Descamps, et al.. Usefulness of Kaposi's Sarcoma-Associated Herpesvirus (KSHV) DNA Viral Load in Whole Blood for Diagnosis and Monitoring of KSHV-Associated Diseases. Journal of Clinical Microbiology, American Society for Microbiology, 2018, 56 (6), pp.1-4. ⟨10.1128/JCM.00569-18⟩. ⟨hal-01984174⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01984174/file/JCM_Jary%202018.pdf BibTex
ref_biblio
Benoit Keraval, Sébastien Fontaine, Audrey Lallement, Sandrine Revaillot, Hermine Billard, et al.. Cellular and non-cellular mineralization of organic carbon in soils with contrasted physicochemical properties. Soil Biology and Biochemistry, Elsevier, 2018, 125, pp.286-289. ⟨10.1016/j.soilbio.2018.07.023⟩. ⟨hal-01939968⟩
Accès au bibtex
BibTex
ref_biblio
Hector Rodriguez Perez, Guillaume Borrel, Céline Leroy, Jean-Francois Carrias, Bruno Corbara, et al.. Simulated drought regimes reveal community resilience and hydrological thresholds for altered decomposition. Oecologia, Springer Verlag, 2018, 187 (1), pp.267-279. ⟨10.1007/s00442-018-4123-5⟩. ⟨hal-01806866⟩
Accès au texte intégral et bibtex
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01806866/file/Simulated%20drought%20regimes_accepted.pdf BibTex
ref_biblio
Alain Dejean, Jérôme Orivel, Maurice Leponce, Arthur Compin, Jacques Delabie H. C, et al.. Ant-plant relationships in the canopy of an Amazonian rainforest: the presence of an ant mosaic. Biological Journal of the Linnean Society, Linnean Society of London, 2018, 125 (2), pp.344-354. ⟨10.1093/biolinnean/bly125⟩. ⟨hal-02623784⟩
Accès au bibtex
BibTex
ref_biblio
Alain Dejean, Jérôme Orivel, Maurice Leponce, Arthur Compin, Jacques Delabie, et al.. Ant–plant relationships in the canopy of an Amazonian rainforest: the presence of an ant mosaic. Biological Journal of the Linnean Society, Linnean Society of London, 2018, 125, pp.344 - 354. ⟨hal-02322714⟩
Accès au bibtex
BibTex
ref_biblio
Olivier Dézerald, Céline Leroy, Bruno Corbara, Alain Dejean, Stanislas Talaga, et al.. Tank bromeliads sustain high secondary production in neotropical forests. Aquatic Sciences - Research Across Boundaries, Springer Verlag, 2018, 80 (2), ⟨10.1007/s00027-018-0566-3⟩. ⟨hal-01850394⟩
Accès au texte intégral et bibtex
https://hal.umontpellier.fr/hal-01850394/file/D%C3%A9zerald%20et%20al.%202018.pdf BibTex
ref_biblio
Alain Dejean, Frédéric Azémar, Frédéric Petitclerc, Jacques Delabie, Bruno Corbara, et al.. Highly modular pattern in ant-plant interactions involving specialized and non-specialized myrmecophytes. The Science of Nature Naturwissenschaften, Springer Verlag, 2018, 105 (7-8), ⟨10.1007/s00114-018-1570-0⟩. ⟨hal-02166245⟩
Accès au bibtex
BibTex
ref_biblio
Régis Cereghino, Valério Pillar, Diane Srivastava, Paula de Omena, A. Andrew M. Macdonald, et al.. Constraints on the functional trait space of aquatic invertebrates in bromeliads. Functional Ecology, Wiley, 2018, 32 (10), pp.2435-2447. ⟨10.1111/1365-2435.13141⟩. ⟨hal-02166192⟩
Accès au texte intégral et bibtex
https://hal.umontpellier.fr/hal-02166192/file/C%C3%A9r%C3%A9ghino%20et%20al.%202018.pdf BibTex
ref_biblio
Kevin Zhong, Curtis A. Suttle, Anne-Claire Baudoux, Evelyne Derelle, Jonathan Colombet, et al.. A New Freshwater Cyanosiphovirus Harboring Integrase. Frontiers in Microbiology, Frontiers Media, 2018, 9, pp.2204. ⟨10.3389/fmicb.2018.02204⟩. ⟨hal-01884603⟩
Accès au texte intégral et bibtex
https://hal.sorbonne-universite.fr/hal-01884603/file/fmicb-09-02204.pdf BibTex
ref_biblio
Olivier Dézerald, Diane Srivastava, Régis Céréghino, Jean-François Carrias, Bruno Corbara, et al.. Functional traits and environmental conditions predict community isotopic niches and energy pathways across spatial scales. Functional Ecology, Wiley, 2018, 32 (10), pp.2423-2434. ⟨10.1111/1365-2435.13142⟩. ⟨hal-02170128⟩
Accès au texte intégral et bibtex
https://hal.umontpellier.fr/hal-02170128/file/D%C3%A9zerald%20et%20al.%202018%282%29.pdf BibTex
ref_biblio
Anne-Catherine Lehours, Francois Enault, Dominique Boeuf, Christian Jeanthon. Biogeographic patterns of aerobic anoxygenic phototrophic bacteria reveal an ecological consistency of phylogenetic clades in different oceanic biomes. Scientific Reports, Nature Publishing Group, 2018, 8, pp.4105. ⟨10.1038/s41598-018-22413-7⟩. ⟨hal-01757822⟩
Accès au texte intégral et bibtex
https://hal.sorbonne-universite.fr/hal-01757822/file/s41598-018-22413-7.pdf BibTex
ref_biblio
Manon Defaye, Céline Nourrisson, Elodie Baudu, Ivan Warwzyniak, Virginie Bonnin, et al.. Efficient and reproducible experimental infections of rats with Blastocystis spp.. PLoS ONE, Public Library of Science, 2018, 13 (11), pp.1-15. ⟨10.1371/journal.pone.0207669⟩. ⟨hal-01931278⟩
Accès au texte intégral et bibtex
https://hal.uca.fr/hal-01931278/file/2018_Delaye_Plos_One.pdf BibTex

Communication dans un congrès

ref_biblio
Yannick Miras, Beauger Aude, Jerry Lonlac, Benjamin Legrand, Delphine Latour, et al.. Combining multi-variate palaeoecological indicators and mining closed gradual patterns for refining past lake dynamics and the induced ecological legacies. International Conference on Ecological Sciences, SFEcologie 2018, Oct 2018, Rennes, France. ⟨hal-02176551⟩
Accès au bibtex
BibTex
ref_biblio
Nicolas Labroche, Antoine Violaine, Kevin Gravouil. On Evidential Clustering with Partial Supervision. BELIEF 2018, Sep 2018, Compiègne, France. pp.14-21, ⟨10.1007/978-3-319-99383-6_3⟩. ⟨hal-01895307⟩
Accès au bibtex
BibTex
ref_biblio
P. Bouchard, A.D. Smith, K. Kanda, Monique Kaminski, G. Flores, et al.. Biodiversity and phylogeny of arid-adapted darkling beetle in the subfamily Pimeliinae (Coleoptera: Tenebrionidae). Canadian Society for Ecology & Evolution Meeting 2018. CSEE 2018, Jul 2018, Guelph, Canada. ⟨hal-02787154⟩
Accès au bibtex
BibTex
ref_biblio
Rafael Munoz Tamayo, Milka Popova, Diego Morgavi, Dominique Graviou, Jean-Pierre Morel, et al.. Rumen methanogens display species-specific energetic and growth dynamics: a thermodynamic and kinetic based modelling approach. Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France. ⟨hal-01840971⟩
Accès au bibtex
BibTex

Chapitre d'ouvrage

ref_biblio
J.C. Bertrand, Pierre Caumette, P. Normand, Bernard Ollivier, T. Sime-Ngando. Prokaryote/eukaryote dichotomy and bacteria/archaea/eukarya domains : two inseparable concepts. Bertrand, J.C. (ed.); Normand, P. (ed.); Ollivier, Bernard (ed.); Sime-Ngando, T. (ed.). Prokaryotes and evolution, Springer, p. 1-21, 2018, 978-3-319-99782-7. ⟨10.1007/978-3-319-99784-1_1⟩. ⟨hal-02328632⟩
Accès au bibtex
BibTex

Poster

ref_biblio
Adeline Baron, Audrey Mirand, Astrid Vabret, Jean Plantier, Marie Gueudin. Performances des trousses Panther/Fusion virus respiratoires (Hologic) chez les enfants de moins de 3 ans. RICAI, Dec 2018, Paris, France. ⟨hal-02270997⟩
Accès au texte intégral et bibtex
https://hal-normandie-univ.archives-ouvertes.fr/hal-02270997/file/RICAI_poster%20Fusion%20vs%20ePlex%20nov%202018.pdf BibTex
ref_biblio
Benjamin Legrand, Aude Beauger, Yannick Miras, Karen K. Serieyssol, Marlène Lavrieux, et al.. Investigating the long-term recurrence of nostocalean cyanobacteria through a 6 700 years core in a eutrophic Lake. International Conference on Ecological Sciences, Sfécologie 2018, Oct 2018, Rennes, France. ⟨hal-02176859⟩
Accès au bibtex
BibTex
ref_biblio
Rafael Muñoz-Tamayo, Milka Popova, Diego Morgavi, Dominique Graviou, Jean Pierre Morel, et al.. Rumen methanogens exhibit specific energetic and growth dynamics: a modelling approach. 10. International Symposium on the Nutrition of Herbivores (ISNH10), Sep 2018, Clermont-Ferrand, France. Cambridge University Press, Advances in Animal Biosciences, 9 (3), 2018, 10th. International Symposium on the Nutrition of Herbivores (ISNH10). ⟨hal-02734246⟩
Accès au bibtex
BibTex

Thèse

ref_biblio
Florent Rossi. Leaf Litter decomposition in streams subjected to global change : the role of heterotrophic microbial communities. Ecology, environment. Université Clermont Auvergne, 2018. English. ⟨NNT : 2018CLFAC101⟩. ⟨tel-02895270⟩
Accès au texte intégral et bibtex
https://tel.archives-ouvertes.fr/tel-02895270/file/2018CLFAC0101_ROSSI.pdf BibTex
ref_biblio
Iris Eouzan. Facteurs génétiques, biogéographiques et temporels : quels effets sur la structuration du microbiote de la lignée évolutive M de l'abeille européenne Apis mellifera ?. Ecologie, Environnement. Université Clermont Auvergne, 2018. Français. ⟨NNT : 2018CLFAC073⟩. ⟨tel-02128660⟩
Accès au texte intégral et bibtex
https://tel.archives-ouvertes.fr/tel-02128660/file/2018CLFAC073_EOUZAN.pdf BibTex
ref_biblio
Manon Defaye. Mise en place d'un modèle animal d'infection par Blastocystis : répercussion sur la sensibilité colique, le comportement et le microbiote intestinal. Microbiologie et Parasitologie. Université Clermont Auvergne, 2018. Français. ⟨NNT : 2018CLFAS019⟩. ⟨tel-02402188v2⟩
Accès au texte intégral et bibtex
https://tel.archives-ouvertes.fr/tel-02402188/file/2018CLFAS019_DEFAYE.pdf BibTex

Pré-publication, Document de travail

ref_biblio
Rafael Munoz Tamayo, Milka Popova, Maxence Tillier, Diego Morgavi, Gérard Fonty, et al.. Hydrogenotrophic methanogens of the mammalian gut: functionally similar, thermodynamically different -A modelling approach. 2018. ⟨hal-02369430⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-02369430/file/445171.full.pdf BibTex