Publications HAL de la collection ecobiop

2023

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Marius Dhamelincourt, Cédric Tentelier, Arturo Elosegi. ABC model for estimating sea lamprey local population size using a simple nest count during the spawning season. Knowledge and Management of Aquatic Ecosystems, 2023, 424, pp.5. ⟨10.1051/kmae/2023002⟩. ⟨hal-04051607⟩
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Marius Dhamelincourt, Jacques Rives, Miren Atristain, Cédric Tentelier, Arturo Elosegi. Sea lamprey (Petromyzon marinus L.) nests do not affect stream functionality despite increasing physical heterogeneity. Aquatic Sciences - Research Across Boundaries, 2023, 85 (2), pp.49. ⟨10.1007/s00027-023-00946-y⟩. ⟨hal-04031978⟩
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Sophia Ferchiou, France Caza, Richard Villemur, Jacques Labonne, Yves St-Pierre. Skin and Blood Microbial Signatures of Sedentary and Migratory Trout (Salmo trutta) of the Kerguelen Islands. Fishes, 2023, 8 (4), pp.174. ⟨10.3390/fishes8040174⟩. ⟨hal-04060711⟩
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https://hal.inrae.fr/hal-04060711/file/2023_Ferchiou_Fishes.pdf BibTex
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Victor Fririon, Hendrik Davi, Sylvie Oddou-Muratorio, François F. Lebourgeois, Francois Lefèvre. Within and between population phenotypic variation in growth vigor and sensitivity to drought stress in five temperate tree species. Forest Ecology and Management, 2023, 531, pp.120754. ⟨10.1016/j.foreco.2022.120754⟩. ⟨hal-04028874⟩
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https://hal.inrae.fr/hal-04028874/file/2023_Fririon_ForestEcologyManagement.pdf BibTex
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Natacha Nikolic, Floriaan Devloo-Delva, Diane Bailleul, Ekaterina Noskova, Clément Rougeux, et al.. Stepping up to genome scan allows stock differentiation in the worldwide distributed blue shark Prionace glauca. Molecular Ecology, 2023, 32 (5), pp.1000-1019. ⟨10.1111/mec.16822⟩. ⟨hal-03992991⟩
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https://hal.umontpellier.fr/hal-03992991/file/Molecular%20Ecology%20-%202022%20-%20Nikolic%20-%20Stepping%20up%20to%20genome%20scan%20allows%20stock%20differentiation%20in%20the%20worldwide%20distributed.pdf BibTex
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Ivan Scotti, Hadrien Lalagüe, Sylvie Oddou-Muratorio, Rose Ruiz Daniels, Delphine Grivet, et al.. Common microgeographical selection patterns revealed in four European conifers. Molecular Ecology, 2023, 32 (2), pp.393-411. ⟨10.1111/mec.16750⟩. ⟨hal-04060643⟩
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Matthias Vignon, Mingsha Zhou, Angus Mcintosh, Cristian Correa, Peter Westley, et al.. Trait variation in a successful global invader: a large-scale analysis of morphological variance and integration in the brown trout. Biological Invasions, 2023, ⟨10.1007/s10530-023-03003-9⟩. ⟨hal-04005980⟩
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2022

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Iker Alvarez-Mora, Valérie Bolliet, Naroa Lopez-Herguedas, Lyen Castro, Eneritz Anakabe, et al.. Prioritization based on risk assessment to study the bioconcentration and biotransformation of pharmaceuticals in glass eels (Anguilla anguilla) from the Adour estuary (Basque Country, France). Environmental Pollution, 2022, 311, ⟨10.1016/j.envpol.2022.120016⟩. ⟨hal-03806233⟩
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https://hal.inrae.fr/hal-03806233/file/2022_AlvarezMora_EnvironmentalPollution.pdf BibTex
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Colin Bouchard, Olivier Boutron, Jordane Lambremon, Hilaire Drouineau, Patrick Lambert, et al.. Impacts of environmental conditions and management of sluice gates on glass eel migration. Estuarine, Coastal and Shelf Science, 2022, 279, pp.108139. ⟨10.1016/j.ecss.2022.108139⟩. ⟨hal-04028551⟩
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Colin Bouchard, Hilaire Drouineau, Patrick Lambert, Olivier Boutron, Delphine Nicolas. Spatio-temporal variations in glass eel recruitment at the entrance pathways of a Mediterranean delta. ICES Journal of Marine Science, 2022, 79 (6), pp.1874-1887. ⟨10.1093/icesjms/fsac122⟩. ⟨hal-03738744⟩
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Colin Bouchard, Mathieu Buoro, Clément Lebot, Stephanie Carlson. Synchrony in population dynamics of juvenile Atlantic salmon: analyzing spatiotemporal variation and the influence of river flow and demography. Canadian Journal of Fisheries and Aquatic Sciences, 2022, 79 (5), pp.782-794. ⟨10.1139/cjfas-2021-0017⟩. ⟨hal-03640309⟩
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Joelle Chat, Amaia Lamarins, Olivier Lepais. Sea trout ( Salmo trutta ) straying rate decreases as distance from river mouth increases. Journal of Fish Biology, 2022, 8 p. ⟨10.1111/jfb.15152⟩. ⟨hal-03766572⟩
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Louise Chevalier, François de Coligny, Jacques Labonne. A demogenetic individual based model for the evolution of traits and genome architecture under sexual selection. Peer Community Journal, 2022, 2, pp.e8. ⟨10.24072/pcjournal.83⟩. ⟨hal-03554487⟩
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David Costantini, Pierre Blévin, Jan Ove Bustnes, Valérie Esteve, Geir Wing Gabrielsen, et al.. Integument carotenoid-based colouration reflects contamination to perfluoroalkyl substances, but not mercury, in arctic black-legged kittiwakes. Frontiers in Ecology and Evolution, 2022, 10, pp.952765. ⟨10.3389/fevo.2022.952765⟩. ⟨hal-03812162⟩
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Philip Crowley, Cédric Tentelier. Polyandry as a Male Strategy? A Game between Aggressive and Tolerant Males, Arbitrated by Females. American Naturalist, 2022, ⟨10.1086/718028⟩. ⟨hal-03555238⟩
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Philip Crowley, Cédric Tentelier. Resolving conflict over within-pair mating rate in external fertilizers. Journal of Theoretical Biology, 2022, 532, pp.110926. ⟨10.1016/j.jtbi.2021.110926⟩. ⟨hal-03436991⟩
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Philip Crowley, Jacques Labonne, Valérie Bolliet, Françoise Daverat, Agnès Bardonnet. Implications of stress-mediated environmental sex determination for declining eel populations. Reviews in Fish Biology and Fisheries, 2022, 32 (4), pp.1157-1186. ⟨10.1007/s11160-022-09730-x⟩. ⟨hal-03855331⟩
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Philippe Cubry, Sylvie Oddou-Muratorio, Ivan Scotti, Francois Lefèvre. Interactions between microenvironment, selection and genetic architecture drive multiscale adaptation in a simulation experiment. Journal of Evolutionary Biology, 2022, 35 (3), pp.451-466. ⟨10.1111/jeb.13988⟩. ⟨hal-03639980⟩
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https://hal.inrae.fr/hal-03639980/file/2022_Cubry_JEvolBiol.pdf BibTex
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Léa Daupagne, Marius Dhamelincourt, Anne Michaud, Jacques Rives, Stellia Sebihi, et al.. Realistic variations in substrate composition affect spawning preference and egg retention in river lamprey ( Lampetra fluviatilis ). Journal of Fish Biology, 2022, 6 p. ⟨10.1111/jfb.15164⟩. ⟨hal-03766526⟩
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Marius Dhamelincourt, Jacques Rives, Marie Pons, Aitor Larrañaga, Cédric Tentelier, et al.. Sea lamprey nests promote the diversity of benthic macroinvertebrate assemblages. PLoS ONE, 2022, 17 (12), pp.e0274719. ⟨10.1371/journal.pone.0274719⟩. ⟨hal-04028896⟩
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https://hal.inrae.fr/hal-04028896/file/2022_Dhamelincourt_PLOSOne.pdf BibTex
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Marius Dhamelincourt, Jacques Rives, Frédéric Lange, Arturo Elosegi, Cédric Tentelier. Habitat choice versus habitat transformation in a nest-building fish: which matters most?. Behavioral Ecology, 2022, online first, ⟨10.1093/beheco/arac029⟩. ⟨hal-03640550⟩
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Amaia Lamarins, Victor Fririon, Dorinda Marie Folio, Camille Vernier, Léa Daupagne, et al.. Importance of interindividual interactions in eco‐evolutionary population dynamics: The rise of demo‐genetic agent‐based models. Evolutionary Applications, 2022, 15 (12), pp.1988-2001. ⟨10.1111/eva.13508⟩. ⟨hal-03909303⟩
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https://hal-univ-pau.archives-ouvertes.fr/hal-03909303/file/Evolutionary%20Applications%20-%202022%20-%20Lamarins%20-%20Importance%20of%20interindividual%20interactions%20in%20eco%E2%80%90evolutionary%20population.pdf BibTex
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Amaïa Lamarins, Florèn Hugon, Cyril Piou, Julien Papaïx, Etienne Prévost, et al.. Implications of dispersal in Atlantic salmon: lessons from a demo-genetic agent-based model. Canadian Journal of Fisheries and Aquatic Sciences, 2022, 79 (12), ⟨10.1139/cjfas-2021-0342⟩. ⟨hal-03810521⟩
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Emilie Le Luherne, Françoise Daverat, Mathieu Woillez, Christophe Pécheyran, Hélène de Pontual. Coupling natural and electronic tags to explore spawning site fidelity and natal homing in northeast Atlantic European seabass. Estuarine, Coastal and Shelf Science, 2022, 278, pp.108118. ⟨10.1016/j.ecss.2022.108118⟩. ⟨hal-03855407⟩
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Clément Lebot, Marie-Andrée Arago, Laurent Beaulaton, Gaëlle Germis, Marie Nevoux, et al.. Taking full advantage of the diverse assemblage of data at hand to produce time series of abundance. A case study on Atlantic salmon populations of Brittany. Canadian Journal of Fisheries and Aquatic Sciences, 2022, 79 (4), pp.533-547. ⟨10.1139/cjfas-2020-0368⟩. ⟨hal-03401246⟩
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Frédéric Marchand, Agnès Starck, Frédéric Lange. Collecte d'échantillons au Centre de Ressources Biologiques Colisa. NOV'AE, 2022, ⟨10.17180/novae-2022-NS02-art02⟩. ⟨hal-03749051⟩
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María Mateo, Estibaliz Díaz, Laurent Beaulaton, Hilaire Drouineau, Carlos Antunes, et al.. Evaluating Silver Eel Escapement at a Large Scale Using Eel Density Analysis (EDA). Biology and Life Sciences Forum, 2022, 13 (1), ⟨10.3390/blsf2022013095⟩. ⟨hal-03699085⟩
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https://hal.science/hal-03699085/file/Mateo%20et%20al_2022_Evaluating%20Silver%20Eel%20Escapement%20at%20a%20Large%20Scale%20Using%20Eel%20Density%20Analysis.pdf BibTex
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Billy Nzau Matondo, Natacha Delrez, Agnes Bardonnet, Alain Vanderplasschen, Célia Joaquim-Justo, et al.. A complete check-up of European eel after eight years of restocking in an upland river: Trends in growth, lipid content, sex ratio and health status. Science of the Total Environment, 2022, 807 (3), ⟨10.1016/j.scitotenv.2021.151020⟩. ⟨hal-03470887⟩
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David Vallecillo, Matthieu Guillemain, Matthieu Authier, Colin Bouchard, Damien Cohez, et al.. Accounting for detection probability with overestimation by integrating double monitoring programs over 40 years. PLoS ONE, 2022, 17 (3), ⟨10.1371/journal.pone.0265730⟩. ⟨hal-03640048⟩
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2021

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Elorri Arevalo, Anthony Maire, Stéphane Tétard, Etienne Prévost, Frédéric Lange, et al.. Does global change increase the risk of maladaptation of Atlantic salmon migration through joint modifications of river temperature and discharge?. Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1964), pp.20211882. ⟨10.1098/rspb.2021.1882⟩. ⟨hal-03471893⟩
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https://hal.inrae.fr/hal-03471893/file/Arevalo%20et%20al.%20%282021b%29%20ProcB.pdf BibTex
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Lucie Aulus Giacosa, François Guéraud, Philippe Gaudin, Mathieu Buoro, Jean-Christophe Aymes, et al.. Human influence on brown trout juvenile body size during metapopulation expansion. Biology Letters, 2021, 17 (10), ⟨10.1098/rsbl.2021.0366⟩. ⟨hal-03420470⟩
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https://hal.science/hal-03420470/file/2021_AulusGiacosa_BiologyLetters.pdf BibTex
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Loic Baumann, Joanna Vega, Joris Philip, Fabien Polese, Fabrice Vétillard, et al.. Tolerance of young allis shad Alosa alosa (Clupeidae) to oxy‐thermic stress. Journal of Fish Biology, 2021, 98 (1), pp.112-131. ⟨10.1111/jfb.14562⟩. ⟨hal-02986045⟩
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Thérèse Callet, Hongyan Li, Pascale Coste, Stéphane Glise, Cécile Heraud, et al.. Modulation of Energy Metabolism and Epigenetic Landscape in Rainbow Trout Fry by a Parental Low Protein/High Carbohydrate Diet. Biology, 2021, 10 (7), ⟨10.3390/biology10070585⟩. ⟨hal-03272040⟩
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Philip Crowley, Jacques Labonne. Theory of environmental sex determination: Trending populations in stressful environments. Evolution - International Journal of Organic Evolution, 2021, ⟨10.1111/evo.14176⟩. ⟨hal-03176416⟩
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Julien Cucherousset, Rémy Lassus, Carsten Riepe, Paul Millet, Frédéric Santoul, et al.. Quantitative estimates of freshwater fish stocking practices by recreational angling clubs in France. Fisheries Management and Ecology, 2021, 10 p. ⟨10.1111/fme.12471⟩. ⟨hal-03102211⟩
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Julien Cucherousset, Line Sundt‐hansen, Mathieu Buoro, Libor Závorka, Rémy Lassus, et al.. Growth‐enhanced salmon modify stream ecosystem functioning. Journal of Fish Biology, 2021, 12 p. ⟨10.1111/jfb.14904⟩. ⟨hal-03436888⟩
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Jan Grimsrud Davidsen, Xavier Bordeleau, Sindre Håvarstein Eldøy, Frederick Whoriskey, Michael Power, et al.. Marine habitat use and feeding ecology of introduced anadromous brown trout at the colonization front of the sub-Antarctic Kerguelen archipelago. Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-91405-x⟩. ⟨hal-03451892⟩
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Dorinda Marie Folio, Jordi Gil, Arnaud Caudron, Jacques Labonne. Genotype‐by‐environment interactions drive the maintenance of genetic variation in a Salmo trutta L. hybrid zone. Evolutionary Applications, 2021, 14, pp.2698-2711. ⟨10.1111/eva.13307⟩. ⟨hal-03420466⟩
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Thibaut Jousseaume, Jean-Marc Roussel, Laurent Beaulaton, Agnes Bardonnet, Elisabeth Faliex, et al.. Molecular detection of the swim bladder parasite Anguillicola crassus (Nematoda) in fecal samples of the endangered European eel Anguilla anguilla. Parasitology Research, 2021, 120, pp.1897-1902. ⟨10.1007/s00436-021-07100-3⟩. ⟨hal-03161784⟩
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Jacques Labonne, Aurélie Manicki, Louise Chevalier, Marin Tétillon, François Guéraud, et al.. Using Reciprocal Transplants to Assess Local Adaptation, Genetic Rescue, and Sexual Selection in Newly Established Populations. Genes, 2021, 12 (1), 20 p. ⟨10.3390/genes12010005⟩. ⟨hal-03102333⟩
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https://hal.inrae.fr/hal-03102333/file/2021_Labonne_Genes.pdf BibTex
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Karin E Limburg, Françoise Daverat. COVID, Climate Change, and Professional Travel: Reflections by Fisheries Scientists During the Pandemic. Fisheries, 2021, 46 (9), pp.442-444. ⟨10.1002/fsh.10607⟩. ⟨hal-03452065⟩
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Matthieu Lingrand, Caroline Scotti-Saintagne, Sylvie Oddou-Muratorio, Marianne Correard, Olivier Gilg, et al.. Evaluation de l'effet de la conservation du matériel végétal sur la quantité et la qualité de l'ADN, en vue de la mise en place d'une politique de gestion du stockage des échantillons.. Les Cahiers des techniques de l'INRA, 2021. ⟨hal-03336843⟩
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Sylvie Oddou-Muratorio, Cathleen Petit-Cailleux, Valentin Journé, Matthieu Lingrand, Jean-André Magdalou, et al.. Crown defoliation decreases reproduction and wood growth in a marginal European beech population. Annals of Botany, 2021, 128 (2), pp.193-204. ⟨10.1093/aob/mcab054⟩. ⟨hal-03279430⟩
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Cathleen Petit-Cailleux, Hendrik Davi, François Lefèvre, Pieter Johannes Verkerk, Bruno Fady, et al.. Tree Mortality Risks Under Climate Change in Europe: Assessment of Silviculture Practices and Genetic Conservation Networks. Frontiers in Ecology and Evolution, 2021, 9, pp.706414. ⟨10.3389/fevo.2021.706414⟩. ⟨hal-03362511⟩
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Dragos Postolache, Sylvie Oddou-Muratorio, Elia Vajana, Francesca Bagnoli, Erwan Guichoux, et al.. Genetic signatures of divergent selection in European beech ( Fagus sylvatica L.) are associated with the variation in temperature and precipitation across its distribution range. Molecular Ecology, 2021, 30, pp.5029-5047. ⟨10.1111/mec.16115⟩. ⟨hal-03338410⟩
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Nils Teichert, Raphael Lagarde, Nicolas Occelli, Dominique Ponton, Philippe Gaudin. Water temperature influences larval survival of the amphidromous goby Sicyopterus lagocephalus. Ecology of Freshwater Fish, 2021, ⟨10.1111/eff.12602⟩. ⟨hal-03176529⟩
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Cédric Tentelier, Colin Bouchard, Anaïs Bernardin, Amandine Tauzin, Jean-Christophe Aymes, et al.. The dynamics of spawning acts by a semelparous fish and its associated energetic costs. Peer Community Journal, 2021, 1, ⟨10.24072/pcjournal.56⟩. ⟨hal-03471107⟩
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