2023
1. Evaluation of large lake response to centennial changes in land use and climate can be complicated by high spatial and hydrological complexity within their catchments, particularly in regions of low relief. Furthermore, large lakes can exhibit abrupt changes in structure and function that obscure causes of eutrophication.
2. We provide the first quantification of historical trends in lake production, cyanobacterial abundance, sediment geochemistry and diatom composition since c. 1800 in Lake Manitoba, the 29th largest lake in the world, and compared them to Lake Winnipeg, a morphologically similar, adjacent basin with a 10-fold larger catchment and an abrupt increase in production around 1990.
3. Before 1900, Lake Manitoba was mesotrophic, with low sedimentary concentrations of carbon, phosphorus, nitrogen, cyanobacteria and algal pigments, as well as assemblages of low-light-adapted benthic diatoms. Analysis of pigment timeseries with hierarchical generalised additive models revealed that Lake Manitoba eutrophied during 1900-1930 as a consequence of the development of intensive agriculture within its local catchment, but thereafter exhibited stable cyanobacterial densities with limited expansion of N 2 -fixing cyanobacteria despite persistent eutrophication.
4. Lake Manitoba did not undergo an abrupt change as seen in Lake Winnipeg.
5. These findings suggest that catchment size had little influence on water quality degradation and that nutrient influx from proximal agricultural sources was sufficient to initially degrade these large prairie lakes. The abrupt change in Lake Winnipeg around 1990 required additional intensification of local land use that did not occur in the Lake Manitoba catchment.
Background Cyanobacteria and eukaryotic phytoplankton produce long-chain alkanes and generate around 100 times greater quantities of hydrocarbons in the ocean compared to natural seeps and anthropogenic sources. Yet, these compounds do not accumulate in the water column, suggesting rapid biodegradation by co-localized microbial populations. Despite their ecological importance, the identities of microbes involved in this cryptic hydrocarbon cycle are mostly unknown. Here, we identified genes encoding enzymes involved in the hydrocarbon cycle across the salinity gradient of a remote, vertically stratified, seawater-containing High Arctic lake that is isolated from anthropogenic petroleum sources and natural seeps. Metagenomic analysis revealed diverse hydrocarbon cycling genes and populations, with patterns of variation along gradients of light, salinity, oxygen, and sulfur that are relevant to freshwater, oceanic, hadal, and anoxic deep sea ecosystems.
Analyzing genes and metagenome-assembled genomes down the water column of Lake A in the Canadian High Arctic, we detected microbial hydrocarbon production and degradation pathways at all depths, from surface freshwaters to dark, saline, anoxic waters. In addition to Cyanobacteria, members of the phyla Flavobacteria, Nitrospina, Deltaproteobacteria, Planctomycetes, and Verrucomicrobia had pathways for alkane and alkene production, providing additional sources of biogenic hydrocarbons. Known oil-degrading microorganisms were poorly represented in the system, while long-chain hydrocarbon degradation genes were identified in various freshwater and marine lineages such as Actinobacteria, Schleiferiaceae, and Marinimicrobia. Genes involved in sulfur and nitrogen compound transformations were abundant in hydrocarbon producing and degrading lineages, suggesting strong interconnections with nitrogen and sulfur cycles and a potential for widespread distribution in the ocean.
Our detailed metagenomic analyses across water column gradients in a remote petroleum-free lake derived from the Arctic Ocean suggest that the current estimation of bacterial hydrocarbon production in the ocean could be substantially underestimated by neglecting non-phototrophic production and by not taking low oxygen zones into account. Our findings also suggest that biogenic hydrocarbons may sustain a large fraction of freshwater and oceanic microbiomes, with global biogeochemical implications for carbon, sulfur, and nitrogen cycles.