Publications HAL de Joseph,NESME de la collection AMPERE

Article dans une revue

2016

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Joseph Nesme, Wafa Achouak, Spiros Agathos, Mark Bailey, Petr Baldrian, et al.. Back to the Future of Soil Metagenomics. Frontiers in Microbiology, Frontiers Media, 2016, 7, ⟨10.3389/fmicb.2016.00073⟩. ⟨hal-01923285⟩
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https://hal.archives-ouvertes.fr/hal-01923285/file/fmicb-07-00073.pdf BibTex

2014

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Tom Delmont, Davide Francioli, Sophie Jacquesson, Sandra Laoudi, Alban Mathieu, et al.. Microbial community development and unseen diversity recovery in inoculated sterile soil. Biology and Fertility of Soils, Springer Verlag, 2014, 50 (7), pp.1069 - 1076. ⟨10.1007/s00374-014-0925-8⟩. ⟨hal-01928111⟩
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Joseph Nesme, Pascal Simonet. The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria. Environmental Microbiology, Wiley-Blackwell, 2014, 17 (4), pp.913 - 930. ⟨10.1111/1462-2920.12631⟩. ⟨hal-01589189⟩
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Joseph Nesme, Sébastien Cecillon, Tom Delmont, Jean-Michel Monier, Timothy Vogel, et al.. Large-Scale Metagenomic-Based Study of Antibiotic Resistance in the Environment. Current Biology - CB, Elsevier, 2014, pp.voir DOI. ⟨10.1016/j.cub.2014.03.036⟩. ⟨hal-00988678⟩
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2012

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Xiaojun Zhang, Joseph Nesme, Pascal Simonet, Asa Frostegard. Fate of invading bacteria in soil and survival of transformants after simulated uptake of transgenes, as evaluated by a model system based on lindane degradation. Research in Microbiology, Elsevier, 2012, 163 (3), pp.200-210. ⟨10.1016/j.resmic.2012.01.007⟩. ⟨hal-00747248⟩
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Communication dans un congrès

2015

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Joseph Nesme, Ed Topp, Pascal Simonet. Antibiotic resistance genes mobility and dissemination during a long-term experiment: fifteen years of farm-soil amendment with antibiotics analyzed with high-throughput sequencing. Indo-French Workshop on Environmental Biotechnology (Molecular Ecology & Environmental Engineering), Feb 2015, Bhubaneswar, India. ⟨hal-01974551⟩
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Joseph Nesme, Pascal Simonet. What’s the road to resistance ? - 15 years of antibiotic molecules application to farm soil do not significantly increase resistance genes abundance. 3rd International symposium on the environmental dimension of antibiotic resistance. EDAR 3., May 2015, Wernigerode, Germany. ⟨hal-01974599⟩
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2014

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Joseph Nesme, Pascal Simonet. Skin metagenomics. 8th Stratum Corneum International Symposium, Sep 2014, Cardiff, United Kingdom. ⟨hal-01973852⟩
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2013

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Joseph Nesme. Amazonian resistome: evaluating antibiotic resistance abundance and diversity across a French Guiana forest soil gradient through metagenomic approaches. 17th Evolutionary Biology Meeting at Marseilles, Sep 2013, Marseille, France. ⟨hal-00932206⟩
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Joseph Nesme. Amazonian resistome: Evaluating antibiotic resistance abundance through metagenomic approaches. 2nd Thünen Symposium on soil metagenomics, Dec 2013, Braunschweig, Germany. ⟨hal-00925331⟩
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Thèse

2014

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Joseph Nesme. Caractérisation de la prévalence et de la diversité des gènes de résistance bactérienne à des antibiotiques dans le sol par des approches métagénomiques : Quel est le potentiel de la dissémination du résistome tellurique?. Autre. Ecole Centrale de Lyon, 2014. Français. ⟨NNT : 2014ECDL0015⟩. ⟨tel-01124013⟩
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https://tel.archives-ouvertes.fr/tel-01124013/file/2014ECDL0015.pdf BibTex