Publications HAL de anne poupon

2024

Journal articles

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Lucille Lamendour, Mäelle Gilotin, Nora Deluce-Kakwata Nkor, Zineb Lakhrif, Daniel Meley, et al.. Bispecific antibodies tethering innate receptors induce human tolerant-dendritic cells and regulatory T cells. Frontiers in Immunology, 2024, 15, pp.1369117. ⟨10.3389/fimmu.2024.1369117⟩. ⟨hal-04601179⟩
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https://hal.inrae.fr/hal-04601179/file/2024_Lamendour_Front-Immunol_vol-15.pdf BibTex
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Delphine Diana Acar, Wojciech Witkowski, Magdalena Wejda, Ruifang Wei, Tim Desmet, et al.. Integrating artificial intelligence-based epitope prediction in a SARS-CoV-2 antibody discovery pipeline: caution is warranted. EBioMedicine, 2024, 100, pp.104960. ⟨10.1016/j.ebiom.2023.104960⟩. ⟨hal-04449723⟩
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https://hal.science/hal-04449723/file/PIIS2352396423005261.pdf BibTex

2023

Journal articles

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Anielka Zehnaker, Amandine Vallet, Juliette Gourdon, Caterina Sarti, Vinesh Jugnarain, et al.. Combined multiplexed phage display, high-throughput sequencing, and functional assays as a platform for identifying modulatory VHHs targeting the FSHR. International Journal of Molecular Sciences, 2023, 24 (21), pp.15961. ⟨10.3390/ijms242115961⟩. ⟨hal-04274818⟩
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https://hal.science/hal-04274818/file/Zehnakeretal2023.pdf BibTex
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Christophe Dumet, Martine Pugnière, Corinne Henriquet, Valérie Gouilleux-Gruart, Anne Poupon, et al.. Harnessing Fc/FcRn affinity data from patents with different machine learning methods. International Journal of Molecular Sciences, 2023, 24 (6), pp.5724. ⟨10.3390/ijms24065724⟩. ⟨hal-04308512⟩
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https://cnrs.hal.science/hal-04308512/file/ijms-24-05724-1%20%281%29.pdf BibTex

2022

Journal articles

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Astrid Musnier, Thomas Bourquard, Amandine Vallet, Laetitia Mathias, Gilles Bruneau, et al.. A New in Silico antibody similarity measure both identifies large sets of epitope binders with distinct CDRs and accurately predicts off-target reactivity. International Journal of Molecular Sciences, 2022, 23 (17), pp.1-17. ⟨10.3390/ijms23179765⟩. ⟨hal-03838203⟩
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https://hal.inrae.fr/hal-03838203/file/ijms-23-09765-v2.pdf BibTex
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Harshad Ugamraj, Kevin Dang, Laure-Hélène Ouisse, Benjamin Buelow, Eduardo Chini, et al.. TNB-738, a biparatopic antibody, boosts intracellular NAD+ by inhibiting CD38 ecto-enzyme activity. mAbs, 2022, 14 (1), ⟨10.1080/19420862.2022.2095949⟩. ⟨hal-03684683⟩
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https://hal.science/hal-03684683/file/TNB%20738%20a%20biparatopic%20antibody%20boosts%20intracellular%20NAD%20by%20inhibiting%20CD38%20ecto%20enzyme%20activity.pdf BibTex
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Denis Maurel, Sandy Chéry, Nicole Bidoit, Philippe Chatalic, Aziza Filali, et al.. Transducer Cascades for Biological Literature-Based Discovery. Information, 2022, 13 (5), pp.262. ⟨10.3390/info13050262⟩. ⟨hal-03846458⟩
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https://cnrs.hal.science/hal-03846458/file/information-13-00262-v2.pdf BibTex

2021

Journal articles

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Francesco de Pascali, Mohammed Akli Ayoub, Riccardo Benevelli, Silvia Sposini, Jordan Lehoux, et al.. Pharmacological characterization of low molecular weight biased agonists at the follicle stimulating hormone receptor. International Journal of Molecular Sciences, 2021, 22 (18), pp.1-23. ⟨10.3390/ijms22189850⟩. ⟨hal-03351267⟩
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https://hal.science/hal-03351267/file/ijms-22-09850-v2.pdf BibTex
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C. Trilleaud, V. Gauttier, K. Biteau, I. Girault, L. Belarif, et al.. Agonist anti-ChemR23 mAb reduces tissue neutrophil accumulation and triggers chronic inflammation resolution. Science Advances , 2021, 7 (14), pp.1-14. ⟨10.1126/sciadv.abd1453⟩. ⟨hal-03462811⟩
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Elodie Blondel-Tepaz, Marie Leverve, Badr Sokrat, Justine Paradis, Milena Kosic, et al.. The RanBP2/RanGAP1-SUMO complex gates β-arrestin2 nuclear entry to regulate the Mdm2-p53 signaling axis. Oncogene, 2021, 40 (12), pp.2243-2257. ⟨10.1038/s41388-021-01704-w⟩. ⟨hal-03414899⟩
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https://hal.science/hal-03414899/file/ONC-2020-2063RR%20main.pdf BibTex
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Shifa Tahir, Thomas Bourquard, Astrid Musnier, Yann Jullian, Yannick Corde, et al.. Accurate determination of epitope for antibodies with unknown 3D structures. mAbs, 2021, 13 (1), pp.1-10. ⟨10.1080/19420862.2021.1961349⟩. ⟨hal-03390655⟩
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https://hal.science/hal-03390655/file/Tahir-MAbs2021.pdf BibTex
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Caroline Vayne, Thi-Huong Nguyen, Jérôme Rollin, Noémie Charuel, Anne Poupon, et al.. Characterization of new monoclonal PF4-specific antibodies as useful tools for studies on typical and autoimmune heparin-induced thrombocytopenia. Thrombosis and Haemostasis, 2021, 121 (3), pp.322-331. ⟨10.1055/s-0040-1717078⟩. ⟨hal-03039816⟩
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https://cnrs.hal.science/hal-03039816/file/vayne2020.pdf BibTex

2020

Journal articles

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Jérôme Granel, Roxane Lemoine, Eric Morello, Yann Gallais, Julie Mariot, et al.. 4C3 Human Monoclonal Antibody: A Proof of Concept for Non-pathogenic Proteinase 3 Anti-neutrophil Cytoplasmic Antibodies in Granulomatosis With Polyangiitis. Frontiers in Immunology, 2020, 11, 17 p. ⟨10.3389/fimmu.2020.573040⟩. ⟨hal-03039822⟩
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https://cnrs.hal.science/hal-03039822/file/granel2020.pdf BibTex
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Thibaut Laboute, Jorge Gandía, Lucie P. Pellissier, Yannick Corde, Florian Rebeillard, et al.. The orphan receptor GPR88 blunts the signaling of opioid receptors and multiple striatal GPCRs. eLife, 2020, 9, ⟨10.7554/eLife.50519⟩. ⟨hal-02898979⟩
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https://hal.science/hal-02898979/file/The%20orphan%20receptor%20GPR88%20blunts%20the%20signaling%20of%20opioid%20receptors%20and%20multiple%20striatal%20GPCRs%20Laboute%20eLife%202020.pdf BibTex

2019

Journal articles

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Flavie Landomiel, Francesco de Pascali, Pauline Raynaud, Frédéric Jean-Alphonse, Romain Yvinec, et al.. Biased signaling and allosteric modulation at the FSHR. Frontiers in Endocrinology, 2019, 10, pp.148. ⟨10.3389/fendo.2019.00148⟩. ⟨hal-02362523⟩
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https://hal.science/hal-02362523/file/Landomiel-FCE2019.pdf BibTex
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Madeline Neiveyans, Rana Melhem, Christophe Arnoult, Thomas Bourquard, Marta Jarlier, et al.. A recycling anti-transferrin receptor-1 monoclonal antibody as an efficient therapy for erythroleukemia through target up-regulation and antibody-dependent cytotoxic effector functions. mAbs, 2019, 11 (3), pp.593-605. ⟨10.1080/19420862.2018.1564510⟩. ⟨hal-02325764⟩
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https://hal.science/hal-02325764/file/Neiveyans%20et%20al%20-%20pre-print%202019.pdf BibTex

2018

Journal articles

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Adrien Rougny, Pauline Gloaguen, Nathalie Langonné, Eric Reiter, Pascale Crépieux, et al.. A logic-based method to build signaling networks and propose experimental plans. Scientific Reports, 2018, 8 (1), pp.1-11. ⟨10.1038/s41598-018-26006-2⟩. ⟨hal-01802480⟩
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https://hal.science/hal-01802480/file/2018_Rougny_Scientific%20Reports_1.pdf BibTex
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Aurélie Trefier, Astrid Musnier, Flavie Landomiel, Thomas Bourquard, Thomas Boulo, et al.. G protein-dependent signaling triggers a β-arrestin-scaffolded p70S6K/ rpS6 module that controls 5'TOP mRNA translation. FASEB Journal, 2018, 32 (3), pp.1154-1169. ⟨10.1096/fj.201700763R⟩. ⟨hal-02620979⟩
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Romain Yvinec, Pascale Crépieux, Eric Reiter, Anne Poupon, Frédérique Clément. Advances in computational modeling approaches of pituitary gonadotropin signaling. Expert Opinion on Drug Discovery, 2018, 13 (9), pp.799-813. ⟨10.1080/17460441.2018.1501025⟩. ⟨hal-01913612⟩
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https://hal.science/hal-01913612/file/computational_gonado_2ndrevision_withauthors.pdf BibTex
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Thomas Bourquard, Astrid Musnier, Vincent Puard, Shifa Tahir, Mohammed Akli Ayoub, et al.. MAbTope: A Method for Improved Epitope Mapping. Journal of Immunology, 2018, 201 (10), pp.3096-3105. ⟨10.4049/jimmunol.1701722⟩. ⟨hal-02373708⟩
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https://hal.science/hal-02373708/file/Bourquard2018.pdf BibTex

2017

Journal articles

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Emilie Dambroise, Matthieu Simion, Thomas Bourquard, Stéphanie Bouffard, Barbara Rizzi, et al.. Post-embryonic Fish Brain Proliferation Zones Exhibit Neuroepithelial-type Gene Expression Profile.. Stem Cells / Stem Cells (Miamisburg), 2017, 35 (6), pp.1505-1518. ⟨10.1002/stem.2588⟩. ⟨hal-01490733⟩
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Elisabeth Cassier, Nathalie Gallay, Thomas Bourquard, Sylvie Claeysen, Joël Bockaert, et al.. Phosphorylation of b-arrestin2 at Thr 383 by MEK underlies b-arrestin-dependent activation of Erk1/2 by GPCRs. eLife, 2017, 6, pp.1-21. ⟨10.7554/eLife.23777⟩. ⟨hal-02365986⟩
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https://hal.science/hal-02365986/file/Cassier%20et%20al%20Elife%202017.pdf BibTex
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Pascale Crépieux, Anne Poupon, Nathalie Langonné, Eric Reiter, Javier Delgado, et al.. A comprehensive view of the β-arrestinome. Frontiers in Endocrinology, 2017, 8, pp.1-11. ⟨10.3389/fendo.2017.00032⟩. ⟨hal-01604904⟩
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https://hal.science/hal-01604904/file/2017_PCrepieux_FrontiersEndocrinol_1.pdf BibTex
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C. Kizlik-Masson, C. Vayne, S.E. Mckenzie, Anne Poupon, Y. Zhou, et al.. 5B9, a monoclonal anti-platelet factor 4 /heparin IgG with a human Fc fragment that mimics heparin-induced thrombocytopenia antibodies. Journal of Thrombosis and Haemostasis, 2017, 15 (10), pp.1-28. ⟨10.1111/jth.13786⟩. ⟨hal-01601420⟩
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https://hal.science/hal-01601420/file/2017_Kizlik-Masson_JThrombosisHaemostasis_1.pdf BibTex
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Eric Reiter, Mohammed Akli Ayoub, Lucie P. Pellissier, Flavie Landomiel, Astrid Musnier, et al.. β-arrestin signalling and bias in hormone-responsive GPCRs. Molecular and Cellular Endocrinology, 2017, 449, pp.28-41. ⟨10.1016/j.mce.2017.01.052⟩. ⟨hal-01604784⟩
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https://hal.science/hal-01604784/file/2017_EReiter_MolCellEndocrinol_2.pdf BibTex
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Mohammed Akli Ayoub, Pascale Crépieux, Markus Koglin, Marc Parmentier, Jean-Philippe Pin, et al.. Antibodies targeting G protein-coupled receptors: Recent advances and therapeutic challenges. mAbs, 2017, pp.1-24. ⟨10.1080/19420862.2017.1325052⟩. ⟨hal-01604272⟩
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https://hal.science/hal-01604272/file/2017_Ayoub_mAbs_1.pdf BibTex

2016

Journal articles

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Guillaume Brachet, Thomas Bourquard, Nathalie Langonné, Eric Reiter, Valérie Gouilleux-Gruart, et al.. Eculizumab epitope on complement C5: Progress towards a better understanding of the mechanism of action. Molecular Immunology, 2016, 77, pp.126-131. ⟨10.1016/j.molimm.2016.07.016⟩. ⟨hal-01594991⟩
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Mohammed Akli Ayoub, Romain Yvinec, Pascale Crépieux, Anne Poupon. Computational modeling approaches in gonadotropin signaling. Theriogenology, 2016, 86 (1), pp.22-31. ⟨10.1016/j.theriogenology.2016.04.015⟩. ⟨hal-01409338⟩
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https://hal.science/hal-01409338/file/MAARYPCAP_16_therio.pdf BibTex
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Mohammed Akli Ayoub, Romain Yvinec, Gwenhael Jegot, James A. Dias, Sonia-Maria Poli, et al.. Profiling of FSHR negative allosteric modulators on LH/CGR reveals biased antagonism with implications in steroidogenesis. Molecular and Cellular Endocrinology, 2016, 436, pp.10-22. ⟨10.1016/j.mce.2016.07.013⟩. ⟨hal-01409332⟩
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https://hal.science/hal-01409332/file/MMARYetal_16_mce_profiling.pdf BibTex

2015

Journal articles

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Thomas Bourquard, Flavie Landomiel, Eric Reiter, Pascale Crépieux, David W. Ritchie, et al.. Unraveling the molecular architecture of a G protein-coupled receptor/β-arrestin/Erk module complex. Scientific Reports, 2015, 5, pp.5:10760. ⟨10.1038/srep10760⟩. ⟨lirmm-01162594⟩
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https://hal-lirmm.ccsd.cnrs.fr/lirmm-01162594/file/srep10760.pdf BibTex
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Mohammed Akli Ayoub, Flavie Landomiel, Nathalie Langonné, Gwenhael Jegot, Anne Poupon, et al.. Assessing gonadotropin receptor function by resonance energy transfer-based assays. Frontiers in Endocrinology, 2015, 6, pp.1-14. ⟨10.3389/fendo.2015.00130⟩. ⟨hal-01422312⟩
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https://hal.science/hal-01422312/file/2015_MAyoub_FrontiersEndocrinol_%7B44427712-B5F8-4155-B053-7B747100CA88%7D.pdf BibTex

2014

Journal articles

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Flavie Landomiel, Nathalie Langonné, Gwenhael Jegot, Thibaud Tranchant, Guillaume Durand, et al.. Biased signalling in follicle stimulating hormone action. Molecular and Cellular Endocrinology, 2014, 382 (1), pp.452-459. ⟨10.1016/j.mce.2013.09.035⟩. ⟨hal-01129776⟩
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Olivier Monestier, Bertrand Servin, Sylvain Auclair, Thomas Bourquard, Anne Poupon, et al.. Evolutionary origin of Bone Morphogenetic Protein 15 and growth and differentiation factor 9 and differential selective pressure between mono- and polyovulating species. Biology of Reproduction, 2014, 91 (4), pp.1-13. ⟨10.1095/biolreprod.114.119735⟩. ⟨hal-01129871⟩
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https://hal.science/hal-01129871/file/2014_OMonestier_BiolReprod_1.pdf BibTex
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Kelly Léon-Huaman, Thomas Boulo, Astrid Musnier, Julia Morales, Christophe Gauthier, et al.. Activation of a GPCR leads to eIF4G phosphorylation at the 5' cap and to IRES-dependent translation. Journal of Molecular Endocrinology, 2014, 52 (3), pp.373-382. ⟨10.1530/JME-14-0009⟩. ⟨hal-01129823⟩
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2013

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Kelly Léon-Huaman, Nathalie Langonné, Anne Poupon, Eric Reiter, Rozenn Dalbies-Tran, et al.. Integrating microRNAs into the complexity of gonadotropin signaling networks. Frontiers in Cell and Developmental Biology, 2013, 1, pp.1-11. ⟨10.3389/fcell.2013.00003⟩. ⟨hal-01136284⟩
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https://hal.science/hal-01136284/file/2013_Leon_FrontCellDevBiol_1.pdf BibTex

2012

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Domitille Heitzler, Guillaume Durand, Nathalie Gallay, Aurélien Rizk, Seungkirl Ahn, et al.. Competing G protein-coupled receptor kinases balance G protein and β-arrestin signaling.. Molecular Systems Biology, 2012, 8, pp.1-17. ⟨10.1038/msb.2012.22⟩. ⟨hal-00776169⟩
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https://inria.hal.science/hal-00776169/file/msb201222_1.pdf BibTex
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Astrid Musnier, K. Leon, J. Morales, Eric Reiter, Thomas Boulo, et al.. mRNA-selective translation induced by FSH in primary Sertoli cells. Molecular Endocrinology -Baltimore-, 2012, 26 (4), pp.669-680. ⟨10.1210/me.2011-1267⟩. ⟨hal-01129597⟩
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Camille Meslin, Sylvie Mugnier, Isabelle Callebaut, Michel Laurin, Géraldine Pascal, et al.. Evolution of genes involved in gamete interaction: Evidence for positive selection, duplications and losses in vertebrates. PLoS ONE, 2012, 7 (9), pp.1-8. ⟨10.1371/journal.pone.0044548⟩. ⟨hal-01136282⟩
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2011

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Sarel J Fleishman, Timothy A Whitehead, Eva-Maria Strauch, Jacob E Corn, Sanbo Qin, et al.. Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.. Journal of Molecular Biology, 2011, 414 (2), in press. ⟨10.1016/j.jmb.2011.09.031⟩. ⟨inria-00637848⟩
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Alfredo Ulloa-Aguirre, Pascale Crépieux, Anne Poupon, Marie-Christine Maurel, Eric Reiter. Novel pathways in gonadotropin receptor signaling and biased agonism. Reviews in Endocrine and Metabolic Disorders, 2011, 12 (4), pp.259-274. ⟨10.1007/S11154-011-9176-2⟩. ⟨hal-01129533⟩
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Thomas Bourquard, Julie Bernauer, Jérôme Azé, Anne Poupon. A collaborative filtering approach for protein-protein docking scoring functions.. PLoS ONE, 2011, 6 (4), pp.e18541. ⟨10.1371/journal.pone.0018541⟩. ⟨inria-00625000⟩
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https://inria.hal.science/inria-00625000/file/2011_Bourquard_Plosone_1.pdf BibTex
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Pauline Gloaguen, Pascale Crépieux, Domitille Heitzler, Anne Poupon, Eric Reiter. Mapping the follicle-stimulating hormone-induced signaling networks. Frontiers in Endocrinology, 2011, 2 (Article 45), pp.1-13. ⟨10.3389/fendo.2011.00045⟩. ⟨hal-01129612⟩
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2010

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Alfredo Csibi, Karen Cornille, Marie-Pierre Leibovitch, Anne Poupon, Lionel Tintignac, et al.. The translation regulatory subunit eIF3f controls the kinase-dependent mTOR signaling required for muscle differentiation and hypertrophy in mouse. PLoS ONE, 2010, 5 (2), pp.e8994. ⟨10.1371/journal.pone.0008994⟩. ⟨hal-01129600⟩
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https://hal.science/hal-01129600/file/Publis010-dmem-007_Csibi_PlosOne_Translation%20regulatory%20hypertrophy%20mouse_%7B0DFD86A5-4342-41FB-B1BA-A7494EFF68BD%7D.pdf BibTex

2009

Journal articles

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Domitille Heitzler, Pascale Crépieux, Anne Poupon, Frédérique Clément, Francois Fages, et al.. Towards a systems biology approach of-G protein-coupled receptor signalling: challenges and expectations.. Comptes Rendus Biologies, 2009, 332 (11), pp.947-57. ⟨10.1016/j.crvi.2009.09.002⟩. ⟨inria-00461545⟩
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Cong-Zhao Zhou, Philippe Meyer, Sophie Quevillon-Cheruel, Inès Li de La Sierra-Gallay, Bruno Collinet, et al.. Crystal structure of the YML079w protein from Saccharomyces cerevisiae reveals a new sequence family of the jelly-roll fold. Protein Science, 2009, 14, pp.209 - 215. ⟨10.1110/ps.041121305⟩. ⟨hal-03299352⟩
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Astrid Musnier, Domitille Heitzler, Thomas Boulo, Sophie Tesseraud, Guillaume Durand, et al.. Developmental regulation of p70 S6 kinase by a G protein-coupled receptor dynamically modelized in primary cells. Cellular and Molecular Life Sciences, 2009, 66 (21), pp.3487-3503. ⟨10.1007/s00018-009-0134-z⟩. ⟨hal-02660848⟩
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2008

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Julie Bernauer, Ranjit Prasad Bahadur, Francis Rodier, Joël Janin, Anne Poupon. DiMoVo: a Voronoi tessellation-based method for discriminating crystallographic and biological protein-protein interactions.. Bioinformatics, 2008, 24 (5), pp.652-8. ⟨10.1093/bioinformatics/btn022⟩. ⟨inria-00431696⟩
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2007

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Julie Bernauer, Jérôme Azé, Joël Janin, Anne Poupon. A new protein-protein docking scoring function based on interface residue properties.. Bioinformatics, 2007, 23 (5), pp.555-62. ⟨10.1093/bioinformatics/btl654⟩. ⟨inria-00431697⟩
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2005

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Julie Bernauer, Anne Poupon, Jérôme Azé, Joël Janin. A docking analysis of the statistical physics of protein-protein recognition.. Physical Biology, 2005, 2 (2), pp.S17-23. ⟨10.1088/1478-3975/2/2/S02⟩. ⟨inria-00431699⟩
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Jaime Prilusky, Eric Oeuillet, Nathalie Ulryck, Anne Pajon, Julie Bernauer, et al.. HalX: an open-source LIMS (Laboratory Information Management System) for small- to large-scale laboratories.. Acta crystallographica Section D : Structural biology [1993-..], 2005, 61 (Pt 6), pp.671-678. ⟨10.1107/S0907444905001290⟩. ⟨inria-00431702⟩
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Nicolas Leulliot, Lionel Trésaugues, Michael Bremang, Isabelle Sorel, Nathalie Ulryck, et al.. High-throughput crystal-optimization strategies in the South Paris Yeast Structural Genomics Project: one size fits all?. Acta crystallographica Section D : Structural biology [1993-..], 2005, 61, pp.664 - 670. ⟨10.1107/s0907444905000028⟩. ⟨hal-03299325⟩
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2004

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Sophie Quevillon-Cheruel, Dominique Liger, Nicolas Leulliot, Marc Graille, Anne Poupon, et al.. The Paris-Sud yeast structural genomics pilot-project: from structure to function. Biochimie, 2004, 86, pp.617 - 623. ⟨10.1016/j.biochi.2004.09.013⟩. ⟨hal-03299353⟩
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Marc Graille, Sophie Quevillon-Cheruel, Nicolas Leulliot, Cong-Zhao Zhou, Ines Li de La Sierra Gallay, et al.. Crystal Structure of the YDR533c S. cerevisiae Protein, a Class II Member of the Hsp31 Family. Structure, 2004, 12, pp.839 - 847. ⟨10.1016/j.str.2004.02.030⟩. ⟨hal-03299358⟩
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Ines Li de La Sierra-Gallay, Robert Aufrè, Marc Graille, Joë L Janin, Bruno Collinet, et al.. Crystal Structure of the YGR205w Protein From Saccharomyces cerevisiae: Close Structural Resemblance to E. coli Pantothenate Kinase. Proteins - Structure, Function and Bioinformatics, 2004, 54 (4), pp.776-783. ⟨10.1002/prot.10596⟩. ⟨hal-03299361⟩
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2003

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Nicolas Leulliot, Sophie Quevillon-Cheruel, Isabelle Sorel, Ines Li de La Sierra-Gallay, Bruno Collinet, et al.. Structure of Protein Phosphatase Methyltransferase 1 (PPM1), a Leucine Carboxyl Methyltransferase Involved in the Regulation of Protein Phosphatase 2A Activity. Journal of Biological Chemistry, 2003, 279, pp.8351 - 8358. ⟨10.1074/jbc.m311484200⟩. ⟨hal-03299364⟩
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https://hal.science/hal-03299364/file/Leulliot-JBC-2004-orf182.pdf BibTex
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