Publications HAL de nicol de la collection AMPERE

Journal articles

2021

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Damien Finn, Benoît Bergk-Pinto, Christina Hazard, Graeme W. Nicol, Christoph Tebbe, et al.. Functional trait relationships demonstrate life strategies in terrestrial prokaryotes. FEMS Microbiology Ecology, Wiley-Blackwell, 2021, 97 (5), ⟨10.1093/femsec/fiab068⟩. ⟨hal-03411983⟩
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https://hal.archives-ouvertes.fr/hal-03411983/file/Finn%20FEMS%20ME.pdf BibTex
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Man-Young Jung, Christopher Sedlacek, K. Dimitri Kits, Anna Mueller, Sung-Keun Rhee, et al.. Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities. ISME Journal, Nature Publishing Group, 2021, ⟨10.1038/s41396-021-01064-z⟩. ⟨hal-03411975⟩
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https://hal.archives-ouvertes.fr/hal-03411975/file/2021.03.02.433310v1.full.pdf BibTex
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Gareth Norton, Anthony Travis, Panthita Ruang-Areerate, Graeme W. Nicol, Ayotunde Adeosun, et al.. Genetic loci regulating cadmium content in rice grains. Euphytica, 2021, 217 (3), ⟨10.1007/s10681-020-02752-1⟩. ⟨hal-03411978⟩
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Damien Finn, Sungeun Lee, Anders Lanzén, Michel Bertrand, Graeme W. Nicol, et al.. Cropping systems impact changes in soil fungal, but not prokaryote, alpha-diversity and community composition stability over a growing season in a long-term field trial. FEMS Microbiology Ecology, Wiley-Blackwell, 2021, 97 (10), ⟨10.1093/femsec/fiab136⟩. ⟨hal-03411956⟩
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Christina Hazard, James Prosser, Graeme W. Nicol. Use and abuse of potential rates in soil microbiology. Soil Biology and Biochemistry, Elsevier, 2021, 157, pp.108242. ⟨10.1016/j.soilbio.2021.108242⟩. ⟨hal-03412000⟩
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Franciska Vries, Cécile Thion, Michael Bahn, Benoît Bergk Pinto, Sébastien Cécillon, et al.. Glacier forelands reveal fundamental plant and microbial controls on short‐term ecosystem N retention. Journal of Ecology, Wiley, 2021, 109 (10), pp.3710-3723. ⟨10.1111/1365-2745.13748⟩. ⟨hal-03411964⟩
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Eleftheria Bachtsevani, Christina Papazlatani, Constantina Rousidou, Eleni Lampronikou, Urania Menkissoglu-Spiroudi, et al.. Effects of the nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP) on the activity and diversity of the soil microbial community under contrasting soil pH. Biology and Fertility of Soils, Springer Verlag, In press, ⟨10.1007/s00374-021-01602-z⟩. ⟨hal-03411998⟩
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Sungeun Lee, Ella Sieradzki, Alexa Nicolas, Robin Walker, Mary Firestone, et al.. Methane-derived carbon flows into host–virus networks at different trophic levels in soil. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2021, 118 (32), pp.e2105124118. ⟨10.1073/pnas.2105124118⟩. ⟨hal-03411995⟩
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Lisa Stein, Martin Klotz, Kyle Lancaster, Graeme W. Nicol, Wei Qin, et al.. Comment on“A Critical Review on Nitrous Oxide Production by Ammonia-Oxidizing Archaea” by Lan Wu, Xueming Chen, Wei Wei, Yiwen Liu, Dongbo Wang, and Bing-Jie Ni. Environmental Science and Technology, American Chemical Society, 2021, 55 (1), pp.797-798. ⟨10.1021/acs.est.0c06792⟩. ⟨hal-03100724⟩
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2020

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Evangelia Papadopoulou, Eleftheria Bachtsevani, Eleni Lampronikou, Eleni Adamou, Afroditi Katsaouni, et al.. Comparison of Novel and Established Nitrification Inhibitors Relevant to Agriculture on Soil Ammonia- and Nitrite-Oxidizing Isolates. Frontiers in Microbiology, Frontiers Media, 2020, 11, pp.581283. ⟨10.3389/fmicb.2020.581283⟩. ⟨hal-03100745⟩
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Pierfrancesco Nardi, Hendrikus Laanbroek, Graeme W. Nicol, Giancarlo Renella, Massimiliano Cardinale, et al.. Biological nitrification inhibition in the rhizosphere: determining interactions and impact on microbially mediated processes and potential applications. FEMS Microbiology Reviews, Wiley-Blackwell, 2020, 44 (6), pp.874-908. ⟨10.1093/femsre/fuaa037⟩. ⟨hal-03100712⟩
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A. Aigle, C. Gubry‐rangin, C. Thion, K. Estera‐molina, H. Richmond, et al.. Experimental testing of hypotheses for temperature‐ and pH ‐based niche specialization of ammonia oxidizing archaea and bacteria. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2020, 22 (9), pp.4032-4045. ⟨10.1111/1462-2920.15192⟩. ⟨hal-03100729⟩
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2019

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James Prosser, Linda Hink, Cécile Gubry‐rangin, Graeme W. Nicol. Nitrous oxide production by ammonia oxidizers: Physiological diversity, niche differentiation and potential mitigation strategies. Global Change Biology, Wiley, 2019, 26 (1), pp.103-118. ⟨10.1111/gcb.14877⟩. ⟨hal-02416635⟩
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https://hal.archives-ouvertes.fr/hal-02416635/file/Prosser_GlobalChangeBiology_AAM.pdf BibTex
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Graeme W. Nicol, Linda Hink, Cécile Gubry-Rangin, James Prosser, Laura Lehtovirta-Morley. Genome Sequence of “ Candidatus Nitrosocosmicus franklandus” C13, a Terrestrial Ammonia-Oxidizing Archaeon. Microbiology Resource Announcements, American Society for Microbiology, 2019, 8 (40), ⟨10.1128/MRA.00435-19⟩. ⟨hal-02416637⟩
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2018

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Xinda Lu, Graeme W. Nicol, Josh Neufeld. Differential responses of soil ammonia-oxidizing archaea and bacteria to temperature and depth under two different land uses. Soil Biology and Biochemistry, Elsevier, 2018, 120, pp.272-282. ⟨10.1016/j.soilbio.2018.02.017⟩. ⟨hal-01968440⟩
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Yaying Li, Stephen Chapman, Graeme W. Nicol, Huaiying Yao. Nitrification and nitrifiers in acidic soils. Soil Biology and Biochemistry, Elsevier, 2018, 116, pp.290-301. ⟨10.1016/j.soilbio.2017.10.023⟩. ⟨hal-01970357⟩
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Linda Hink, Cécile Gubry-Rangin, Graeme W. Nicol, James Prosser. The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions. ISME Journal, Nature Publishing Group, 2018, 12, pp.1084-1093. ⟨10.1038/s41396-017-0025-5⟩. ⟨hal-01970359⟩
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S. Vasileiadis, E. Puglisi, S. Papadopoulou, G. Pertile, N. Suciu, et al.. Blame It on the Metabolite: 3,5-Dichloroaniline Rather than the Parent Compound Is Responsible for the Decreasing Diversity and Function of Soil Microorganisms. Applied and Environmental Microbiology, American Society for Microbiology, 2018, 84 (22), ⟨10.1128/AEM.01536-18⟩. ⟨hal-01978387⟩
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2017

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Cécile Gubry-Rangin, Breda Novotnik, Ines Mandič-Mulec, Graeme W. Nicol, James I. Prosser. Temperature responses of soil ammonia-oxidising archaea depend on pH. Soil Biology and Biochemistry, Elsevier, 2017, 106, pp.61 - 68. ⟨10.1016/j.soilbio.2016.12.007⟩. ⟨hal-01588948⟩
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Heiko Nacke, Ingo Schöning, Malte Schindler, Marion Schrumpf, Rolf Daniel, et al.. Links between seawater flooding, soil ammonia oxidiser communities and their response to changes in salinity. FEMS Microbiology Ecology, Wiley-Blackwell, 2017, 93 (11), ⟨10.1093/femsec/fix144⟩. ⟨hal-01985981⟩
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Pubmed icone : 29069386
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Linda Hink, Pawel Lycus, Cécile Gubry-Rangin, Asa Frostegard, Graeme W. Nicol, et al.. Kinetics of NH3-oxidation, NO-turnover, N2O-production and electron flow during oxygen depletion in model bacterial and archaeal ammonia oxidisers. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2017, 19 (12), pp.4882-4896. ⟨10.1111/1462-2920.13914⟩. ⟨hal-01970339⟩
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Linda Hink, Graeme W. Nicol, James Prosser. Archaea produce lower yields of N 2 O than bacteria during aerobic ammonia oxidation in soil. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2017, 19 (12), pp.4829-4837. ⟨10.1111/1462-2920.13282⟩. ⟨hal-01985976⟩
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Craig Herbold, Laura Lehtovirta-Morley, Man-Young Jung, Nico Jehmlich, Bela Hausmann, et al.. Ammonia-oxidising archaea living at low pH: Insights from comparative genomics. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2017, 19 (12), pp.4939-4952. ⟨10.1111/1462-2920.13971⟩. ⟨hal-01970311⟩
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Felix J Elling, Martin Könneke, Graeme W Nicol, Michaela Stieglmeier, Barbara Bayer, et al.. Chemotaxonomic characterisation of the thaumarchaeal lipidome. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2017, 19, pp.2681-2700. ⟨10.1111/1462-2920.13759⟩. ⟨hal-01970306⟩
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2016

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Laura Lehtovirta-Morley, Jenna Ross, Linda Hink, Eva Weber, Cécile Gubry-Rangin, et al.. Isolation of ‘ Candidatus Nitrosocosmicus franklandus’, a novel ureolytic soil archaeal ammonia oxidiser with tolerance to high ammonia concentration. FEMS Microbiology Ecology, Wiley-Blackwell, 2016, 92 (5), pp.fiw057. ⟨10.1093/femsec/fiw057⟩. ⟨hal-01986008⟩
pubmedId
Pubmed icone : 26976843
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Qiongli Bao, Yizong Huang, Fenghua Wang, Sanan Nie, Graeme W. Nicol, et al.. Effect of nitrogen fertilizer and/or rice straw amendment on methanogenic archaeal communities and methane production from a rice paddy soil. Applied Microbiology and Biotechnology, Springer Verlag, 2016, 100 (13), pp.5989 - 5998. ⟨10.1007/s00253-016-7377-z⟩. ⟨hal-01589066⟩
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Laura E. Lehtovirta-Morley, Luis A. Sayavedra-Soto, Nicolas Gallois, Stefan Schouten, Lisa Y. Stein, et al.. Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon “Candidatus Nitrosotalea devanaterra”. Applied and Environmental Microbiology, American Society for Microbiology, 2016, 82 (9), pp.2608 - 2619. ⟨10.1128/AEM.04031-15⟩. ⟨hal-01589048⟩
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Eduard Vico Oton, Christopher Quince, Graeme W Nicol, James I Prosser, Cécile Gubry-Rangin. Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota. ISME Journal, Nature Publishing Group, 2016, 10 (1), pp.85 - 96. ⟨10.1038/ismej.2015.101⟩. ⟨hal-01589185⟩
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2015

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Barbara Stempfhuber, Marion Engel, Doreen Fischer, Ganna Neskovic-Prit, Tesfaye Wubet, et al.. pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils. Microbial Ecology, Springer Verlag, 2015, 69 (4), pp.879-883. ⟨10.1007/s00248-014-0548-5⟩. ⟨hal-01986023⟩
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Pubmed icone : 25501889
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2014

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Andrea Bartram, Xingpeng Jiang, Michael D.J. Lynch, Andre Masella, Graeme W. Nicol, et al.. Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm. FEMS Microbiology Ecology, Wiley-Blackwell, 2014, 87 (2), pp.403-415. ⟨10.1111/1574-6941.12231⟩. ⟨hal-01986062⟩
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Pubmed icone : 24117982
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Laura Lehtovirta-Morley, Chaorong Ge, Jenna Ross, Huaiying Yao, Graeme W. Nicol, et al.. Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds. FEMS Microbiology Ecology, Wiley-Blackwell, 2014, 89 (3), pp.542-552. ⟨10.1111/1574-6941.12353⟩. ⟨hal-01986028⟩
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Pubmed icone : 24909965
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Conference papers

2019

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Sungeun Lee, Christina Hazard, Graeme W. Nicol. Uncovering virus-bacterial host interactions across ecological gradients in soil. BAGECO 15 : Ecosystem drivers in a changing planet, May 2019, Lisbon, Portugal. ⟨hal-02122098⟩
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Cécile Thion, Petra Pjevac, Holger Daims, Graeme W. Nicol. Earth, air and water – oxygen availability influences comammox activity in soil. BAGECO 15 : Ecosystem drivers in a changing planet, May 2019, Lisbon, Portugal. ⟨hal-02122107⟩
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Sungeun Lee, Ella Sieradzki, Alexa Nicolas, M. K. Firestone, Christina Hazard, et al.. Stable-isotope probing and metagenomic analysis demonstrates individual host-virus interactions in soil methanotroph communities. 4th Thünen Symposium on Soil Metagenomics, Dec 2019, Braunschweig, Germany. ⟨hal-02932198⟩
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Graeme W. Nicol. Understanding the relative contribution of comammox bacteria to ammonia oxidation in agricultural soil. 6th International Conference on Nitrification, Oct 2019, Xiamen, China. ⟨hal-02416640⟩
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2018

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Linda Hink, Yiyu Meng, Christopher Sedlacek, Holger Daims, Michael Wagner, et al.. Physiological and genomic characterisation of an acidotolerant nitrite oxidising bacterium. ISME17, Aug 2018, Leipzig, Germany. ⟨hal-01978429⟩
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Naima Mouhoubi, Anders Lanzén, Graeme W. Nicol, Christina Hazard. Application of organic residues on soils with contrasting nitrogen fertilization differentially impacts the diversity of soil microbial communities. ISME17, Aug 2018, Leipzig, Germany. ⟨hal-01977533⟩
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2015

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Graeme W Nicol. From enigmatic curios to global players: current understanding of the diversity and unique contributions of Archaea to global biogeochemical cycles. Congress of the Society for Molecular Biology and Evolution (SMBE), Jun 2015, Vienne, Austria. ⟨hal-01974622⟩
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Laura E. Lehtovirta-Morley, James I Prosser, Graeme W Nicol. Growing up in a tough neighbourhood: adaptations of ammonia oxidising archaea enabling growth at low pH. BAGECO 13 : The microbial continuity across changing ecosystems, Jun 2015, Milan, Italy. ⟨hal-01974645⟩
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Graeme W Nicol. Growing up in a tough neighbourhood: adaptations of ammonia oxidising archaea enabling growth at low pH. ICoN4 - International Conference on Nitrification (and Related Processes), May 2015, Edmonton (Alberta), Canada. ⟨hal-01974653⟩
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Preprints, Working Papers, ...

2021

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Sungeun Lee, Jackson Sorensen, Robin Walker, Joanne Emerson, Graeme W. Nicol, et al.. Soil viral communities are structured by pH at local and global scales. 2021. ⟨hal-03413481⟩
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Christina Hazard, James Prosser, Graeme W. Nicol. Use and abuse of potential rates in soil microbiology. 2021. ⟨hal-03102500⟩
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