Publications HAL

2018

Journal articles

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Gabriel Carvalho, Damien Balestrino, Christiane Forestier, Jean-Denis Mathias. How do environment-dependent switching rates between susceptible and persister cells affect the dynamics of biofilms faced with antibiotics?. npj Biofilms and Microbiomes, 2018, 4 (1), 〈10.1038/s41522-018-0049-2〉. 〈hal-01739194〉
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Yoann Seeleuthner, Samuel Mondy, Vincent Lombard, Quentin Carradec, Eric Pelletier, et al.. Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans. Nature Communications, Nature Publishing Group, 2018, 9 (1), pp.310 〈10.1038/s41467-017-02235-3〉. 〈hal-01771839〉
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Radhe Shyam, Nicolas Charbonnel, Aurélie Job, Christelle Blavignac, Christiane Forestier, et al.. 1,2,3-Triazolium-Based Cationic Amphipathic Peptoid Oligomers Mimicking Antimicrobial Helical Peptides. ChemMedChem, Wiley-VCH Verlag, 2018, 13 (15), pp.1513 - 1516. 〈10.1002/cmdc.201800273〉. 〈hal-01875150〉
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Sergey Melnikov, Keith Rivera, Denis Ostapenko, Arthur Makarenko, Neil Sanscrainte, et al.. Error-prone protein synthesis in parasites with the smallest eukaryotic genome. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2018, 115 (27), pp.E6245 - E6253. 〈10.1073/pnas.1803208115〉. 〈hal-01867872〉
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Louis Carles, Muriel Joly, Frédérique Bonnemoy, Martin Leremboure, Florence Donnadieu, et al.. Biodegradation and toxicity of a maize herbicide mixture: mesotrione, nicosulfuron and S-metolachlor. Journal of Hazardous Materials, Elsevier, 2018, 354, pp.42 - 53. 〈10.1016/j.jhazmat.2018.04.045〉. 〈hal-01785204〉
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Christian Farinetto, Franck Maunoury, Stephane Ruckly, Jeremy Guenezan, Jean-Christophe Lucet, et al.. Cost-effectiveness analysis of chlorhexidine-alcohol versus povidone iodine-alcohol solution in the prevention of intravascular-catheter-related bloodstream infections in France. PLoS ONE, Public Library of Science, 2018, 13 (5), 〈10.1371/journal.pone.0197747〉. 〈hal-01802878〉
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François Barbier, Sébastien Bailly, Carole Schwebel, Laurent Papazian, Élie Azoulay, et al.. Infection-related ventilator-associated complications in ICU patients colonised with extended-spectrum beta-lactamase-producing Enterobacteriaceae. Intensive Care Medicine, Springer Verlag, 2018, 44 (5), pp.616-626. 〈10.1007/s00134-018-5154-4〉. 〈hal-01847386〉
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Marie Desnos-Ollivier, Victoria Bórmida, Philippe Poirier, Céline Nourrisson, Dinorah Pan, et al.. Population Structure of Candida parapsilosis: No Genetic Difference Between French and Uruguayan Isolates Using Microsatellite Length Polymorphism. Mycopathologia, Springer Verlag, 2018, 183 (2), pp.381 - 390. 〈10.1007/s11046-017-0224-7〉. 〈pasteur-01854076〉
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Olivier Dézerald, Céline Leroy, Bruno Corbara, Alain Dejean, Stanislas Talaga, et al.. Tank bromeliads sustain high secondary production in neotropical forests. Aquatic Sciences - Research Across Boundaries, Springer Verlag, 2018, 80 (2), 〈10.1007/s00027-018-0566-3〉. 〈hal-01850394〉
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Yvan Bettarel, Sebastien Halary, Jean-Christophe Auguet, Thanh Chi Mai, Ngoc Van Bui, et al.. Corallivory and the microbial debacle in two branching scleractinians. ISME Journal, Nature Publishing Group, 2018, 12 (4), pp.1109--1126. 〈10.1038/s41396-017-0033-5〉. 〈hal-01826712〉
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Hector Rodriguez Perez, Guillaume Borrel, Céline Leroy, Jean-Francois Carrias, Bruno Corbara, et al.. Simulated drought regimes reveal community resilience and hydrological thresholds for altered decomposition. Oecologia, Springer Verlag, 2018, 187 (1), pp.267-279. 〈10.1007/s00442-018-4123-5〉. 〈hal-01806866〉
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Paul Alain Nana, Zéphyrin Fokam, Bernard Vigues, Geneviève Bricheux, GidÉon Ajeagah Aghaindum, et al.. Morphology and infraciliature of two new earthworm ciliates, Hoplitophrya polymorphus sp. nov. and Anoplophrya simplex sp. nov. (Ciliophora: Oligohymenophorea: Astomatia). Zootaxa, Magnolia Press, 2018, 4392 (1), 〈10.11646/zootaxa.4392.1.9〉. 〈hal-01727084〉
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Maxime Bisseux, Jonathan Colombet, Audrey Mirand, Anne-Marie Roque-Afonso, Florence Abravanel, et al.. Monitoring human enteric viruses in wastewater and relevance to infections encountered in the clinical setting: a one-year experiment in central France, 2014 to 2015. Eurosurveillance, European Centre for Disease Prevention and Control, 2018, 23 (7), 〈10.2807/1560-7917.ES.2018.23.7.17-00237〉. 〈hal-01734503〉
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Eléonore Frouin, Méline Bes, Bernard Ollivier, Marianne Quéméneur, Anne Postec, et al.. Diversity of Rare and Abundant Prokaryotic Phylotypes in the Prony Hydrothermal Field and Comparison with Other Serpentinite-Hosted Ecosystems. Frontiers in Microbiology, Frontiers Media, 2018, 9, 〈10.3389/fmicb.2018.00102〉. 〈hal-01734508〉
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Céline Lavergne, Mylène Hugoni, Cédric Hubas, Didier Debroas, Dupuy Christine, et al.. Diel rhythm does not shape the vertical distribution of bacterial and archaeal 16S rRNA transcript diversity in intertidal sediments: a mesocosm study Running title: Diel activities of benthic Bacteria and Archaea. Microbial Ecology, Springer Verlag, 2018, 75 (2), pp.364-374. 〈https://link.springer.com/article/10.1007/s00248-017-1048-1〉. 〈10.1007/s00248-017-1048-1〉. 〈hal-01573359〉
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Anne-Catherine Lehours, Francois Enault, Dominique Boeuf, Christian Jeanthon. Biogeographic patterns of aerobic anoxygenic phototrophic bacteria reveal an ecological consistency of phylogenetic clades in different oceanic biomes. Scientific Reports, Nature Publishing Group, 2018, 8, pp.4105. 〈10.1038/s41598-018-22413-7〉. 〈hal-01757822〉
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Pierre Deharo, Laurence Camoin, Jacques Quilici, Jean Louis Bonnet, Thomas Cuisset. REPLY: De-Escalation of the P2Y12 Inhibitor After Acute Coronary Syndromes According to On-Treatment Platelet Reactivity A Promising Step of Enormous Magnitude That Should Be Explored. JACC: Cardiovascular Interventions, Elsevier/American College of Cardiology, 2018, 11 (5), pp.508-509. 〈10.1016/j.jcin.2018.01.256〉. 〈hal-01780667〉
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A.S. Pradeep Ram, X. Mari, J. Brune, J.P. Torréton, V.T. Chu, et al.. Bacterial-viral interactions in the sea surface microlayer of a black carbon-dominated tropical coastal ecosystem (Halong Bay, Vietnam). Elementa: Science of the Anthropocene, University of California Press, 2018, 6 (1), pp.13. 〈10.1525/elementa.276〉. 〈hal-01718181〉
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Conference papers

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Rafael Munoz Tamayo, Milka Popova, Diego Morgavi, Dominique Graviou, Jean-Pierre Morel, et al.. Rumen methanogens display species-specific energetic and growth dynamics: a thermodynamic and kinetic based modelling approach. Journées d'Animation Scientifique du département PHASE , Apr 2018, Rennes, France. 2018. 〈hal-01840971〉
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2017

Journal articles

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Didier Debroas, Anne Mone, Alexandra Ter Halle. Plastics in the North Atlantic garbage patch: A boat-microbe for hitchhikers and plastic degraders. Science of the Total Environment, Elsevier, 2017, 599-600, pp.1222 - 1232. 〈10.1016/j.scitotenv.2017.05.059〉. 〈hal-01599311〉
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Eric Capo, Isabelle Domaizon, Dominique Maier, Didier Debroas, Christian Bigler. To what extent is the DNA of microbial eukaryotes modified during burying into lake sediments? A repeat-coring approach on annually laminated sediments. Journal of Paleolimnology, Springer Verlag, 2017, 58 (4), pp.479 - 495. 〈10.1007/s10933-017-0005-9〉. 〈hal-01734500〉
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Mélanie Gerphagnon, Jonathan Colombet, Delphine Latour, Télesphore Sime-Ngando. Spatial and temporal changes of parasitic chytrids of cyanobacteria. Scientific Reports, Nature Publishing Group, 2017, 7 (1), 〈10.1038/s41598-017-06273-1〉. 〈hal-01624036〉
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Jérôme Ory, Charline Mourgues, Evelyne Raybaud, Russell Chabanne, Jean Christophe Jourdy, et al.. Cost assessment of a new oral care program in the intensive care unit to prevent ventilator-associated pneumonia. Clinical Oral Investigations, Springer Verlag, 2017, 〈10.1007/s00784-017-2289-6〉. 〈hal-01659216〉
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Thomas Cuisset, Pierre Deharo, Jacques Quilici, Thomas Johnson, Stéphanie Deffarges, et al.. Benefit of switching dual antiplatelet therapy after acute coronary syndrome: the TOPIC (timing of platelet inhibition after acute coronary syndrome) randomized study. European Heart Journal, Oxford University Press (OUP): Policy B, 2017, 38 (41), pp.3070 - 3078. 〈10.1093/eurheartj/ehx175〉. 〈hal-01760759〉
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Jitendra Keshri, Angia Sriram Pradeep Ram, Jonathan Colombet, Fanny Perrière, Antoine Thouvenot, et al.. Differential impact of lytic viruses on the taxonomical resolution of freshwater bacterioplankton community structure. Water Research, IWA Publishing, 2017, 124, pp.129 - 138. 〈10.1016/j.watres.2017.07.053〉. 〈hal-01624070〉
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Xavier Puechal, Christian Pagnoux, Gabriel Baron, Thomas Quemeneur, Antoine Néel, et al.. Adding Azathioprine to Remission-Induction Glucocorticoids for Eosinophilic Granulomatosis With Polyangiitis (Churg-Strauss), Microscopic Polyangiitis, or Polyarteritis Nodosa Without Poor Prognosis Factors. Arthritis & rheumatology, Wiley, 2017, 69 (11), pp.2175 - 2186. 〈10.1002/art.40205〉. 〈hal-01656761〉
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Jean-François Briand, Aude Barani, Cédric Garnier, Karine Rehel, Félix Urvois, et al.. Spatio-Temporal Variations of Marine Biofilm Communities Colonizing Artificial Substrata Including Antifouling Coatings in Contrasted French Coastal Environments. Microbial Ecology, Springer Verlag, 2017, 74 (3), pp.585 - 598. 〈10.1007/s00248-017-0966-2〉. 〈hal-01599314〉
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Thijs Frenken, Elisabet Alacid, Stella A. Berger, Elizabeth C. Bourne, Mélanie Gerphagnon, et al.. Integrating chytrid fungal parasites into plankton ecology: research gaps and needs. Environmental Microbiology, Wiley-Blackwell, 2017, 19 (10), pp.3802 - 3822. 〈10.1111/1462-2920.13827〉. 〈hal-01624039〉
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Marc Ruivard, Marc Pineton de Chambrun, Marie Gousseff, Wladimir Mauhin, Jean-Christophe Lega, et al.. Intravenous Immunoglobulins Improve Survival in Monoclonal Gammopathy-Associated Systemic Capillary-Leak Syndrome. The American Journal of Medicine, Elsevier [Commercial Publisher] 2017, 130 (10), pp.1219.e19 - 1219.e27. 〈10.1016/j.amjmed.2017.05.023〉. 〈hal-01656768〉
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Imen Miladi, Magali Vivier, Marie-Mélanie Dauplat, Morgane Chatard, Sophie Besse, et al.. Doxycycline and its quaternary ammonium derivative for adjuvant therapies of chondrosarcoma. Cancer Chemotherapy and Pharmacology, Springer Verlag, 2017, 80 (3), pp.517 - 526. 〈10.1007/s00280-017-3377-7〉. 〈hal-01646771〉
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Louis Carles, Muriel Joly, Pierre Joly. Mesotrione Herbicide: Efficiency, Effects, and Fate in the Environment after 15 Years of Agricultural Use. CLEAN - Soil, Air, Water, Wiley, 2017, 45 (9), 〈10.1002/clen.201700011〉. 〈hal-01770298〉
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J. Keshri, A. S. Pradeep Ram, T. Sime-Ngando. Distinctive Patterns in the Taxonomical Resolution of Bacterioplankton in the Sediment and Pore Waters of Contrasted Freshwater Lakes. Microbial Ecology, Springer Verlag, 2017, 〈10.1007/s00248-017-1074-z〉. 〈hal-01624068〉
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Pierre Amato, Muriel Joly, Ludovic Besaury, Anne Oudart, Najwa Taïb, et al.. Active microorganisms thrive among extremely diverse communities in cloud water. PLoS ONE, Public Library of Science, 2017, 12 (8), 〈10.1371/journal.pone.0182869〉. 〈hal-01598571〉
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Nathanael Lampe, Vincent Breton, David Sarramia, Télesphore Sime-Ngando, David G. Biron. Understanding low radiation background biology through controlled evolution experiments. Evolutionary Applications, Blackwell, 2017, 10 (7), pp.658 - 666. 〈10.1111/eva.12491〉. 〈hal-01624071〉
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France Godet, France Cateau, France Rammaert, France Grosset, France Le Moal, et al.. Nebulized Liposomal Amphotericin B for Treatment of Pulmonary Infection Caused by Hormographiella aspergillata: Case Report and Literature Review. Mycopathologia, Springer Verlag, 2017, 182 (7-8), pp.709 - 713. 〈10.1007/s11046-017-0117-9〉. 〈hal-01698249〉
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Eric Capo, Didier Debroas, Fabien Arnaud, Marie-Elodie Perga, Cècile Chardon, et al.. Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming. Environmental Microbiology, Wiley-Blackwell, 2017, 19 (7), pp.2873 - 2892. 〈10.1111/1462-2920.13815〉. 〈hal-01598575〉
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Cyril Guilhen, Christiane Forestier, Damien Balestrino. Biofilm dispersal: multiple elaborate strategies for dissemination of bacteria with unique properties. Molecular Microbiology, Wiley, 2017, 105 (2), pp.188 - 210. 〈10.1111/mmi.13698〉. 〈hal-01626948〉
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Guillaume Borrel, Angela Mccann, Jennifer Deane, Marta C Neto, Denise B Lynch, et al.. Genomics and metagenomics of trimethylamine-utilizing Archaea in the human gut microbiome. The ISME journal, International Society for Microbial Ecology 2017, 11 (9), pp.2059 - 2074. 〈10.1038/ismej.2017.72〉. 〈hal-01658467〉
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Shengnan Li, Gisèle Bronner, Cécile Lepère, Fanxiang Kong, Xiaoli Shi. Temporal and spatial variations in the composition of freshwater photosynthetic picoeukaryotes revealed by MiSeq sequencing from flow cytometry sorted samples. Environmental Microbiology, Wiley-Blackwell, 2017, 19 (6), pp.2286 - 2300. 〈10.1111/1462-2920.13724〉. 〈hal-01867890〉
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Vijayan Jasna, Ammini Parvathi, Angia Sriram Pradeep Ram, Kizhekkapat K. Balachandran, Nikathil V. Madhu, et al.. Viral-Induced Mortality of Prokaryotes in a Tropical Monsoonal Estuary. Frontiers in Microbiology, Frontiers Media, 2017, 8, 〈10.3389/fmicb.2017.00895〉. 〈hal-01624075〉
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C. Nourrisson, D. Garcia-Hermoso, F. Morio, C. Kauffmann-Lacroix, N. Berrette, et al.. Thermothelomyces thermophila human infections. Clinical Microbiology and Infection, Elsevier for the European Society of Clinical Microbiology and Infectious Diseases, 2017, 23 (5), pp.338 - 341. 〈10.1016/j.cmi.2016.10.025〉. 〈hal-01852116〉
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Emeline Valton, Ivan Wawrzyniak, Christian Amblard, Bruno Combourieu, Marie-Laure Bayle, et al.. P-gp expression levels in the erythrocytes of brown trout: a new tool for aquatic sentinel biomarker development. Biomarkers, Taylor & Francis, 2017, 22 (6), pp.566 - 574. 〈10.1080/1354750X.2017.1338314〉. 〈hal-01675152〉
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Evelien M Adriaenssens, Mart Krupovic, Petar Knezevic, Hans-Wolfgang Ackermann, Jakub Barylski, et al.. Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee.. Archives of Virology, Springer Verlag, 2017, 162 (4), pp.1153-1157. 〈10.1007/s00705-016-3173-4〉. 〈hal-01557689〉
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Z. Fokam, P Nana, B Bricheux, B Vigues, P. Bouchard, et al.. Correlation between some environmental variables and abundance of Almophrya mediovacuolata (Ciliophora: Anoplophryidae) endocommensal ciliate of an anecic earthworms (Oligochaeta: Annelida) in Bambui (North-West Cameroon). International Journal of Biological and Chemical Sciences, International Formulae Group (IFG), 2017, 10 (5), 〈10.4314/ijbcs.v10i5.4〉. 〈hal-01623442〉
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Didier Debroas, Isabelle Domaizon, Jean-François Humbert, Ludwig Jardillier, Cécile Lepère, et al.. Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data. FEMS Microbiology Ecology, Wiley-Blackwell, 2017, 93 (4), 〈10.1093/femsec/fix023〉. 〈hal-01599376〉
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Jonathan Colombet, Agnès Robin, Télesphore Sime-Ngando. Genotypic, size and morphological diversity of virioplankton in a deep oligomesotrophic freshwater lake (Lac Pavin, France). Journal of Environmental Sciences, Elsevier, 2017, 53, pp.48 - 59. 〈10.1016/j.jes.2016.05.016〉. 〈hal-01624034〉
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Marc-André Selosse, Marie Charpin, Fabrice Not, Punidan Jeyasingh. Mixotrophy everywhere on land and in water: the grand écart hypothesis. Ecology Letters, Wiley, 2017, 20 (2), pp.246 - 263. 〈10.1111/ele.12714〉. 〈hal-01624074〉
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Léa Cabrol, Marianne Quemeneur, Benjamin Misson. Inhibitory effects of sodium azide on microbial growth in experimental resuspension of marine sediment. Journal of Microbiological Methods, Elsevier, 2017, 133, pp.62 - 65. 〈10.1016/j.mimet.2016.12.021〉. 〈ird-01647866〉
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Vincent Jullien, Elie Azoulay, Carole Schwebel, Thomas Le Saux, Pierre Emmanuel Charles, et al.. Population pharmacokinetics of micafungin in ICU patients with sepsis and mechanical ventilation. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2017, 72 (1), pp.181 - 189. 〈10.1093/jac/dkw352〉. 〈hal-01470808〉
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G. Carvalho, C. Guilhen, D. Balestrino, C. Forestier, J.D. Mathias. Relating switching rates between normal and persister cells to substrate and antibiotic concentrations: a mathematical modelling approach supported by experiments. Microbial Biotechnology, 2017, 10 (6), pp.1616-1627. 〈10.1111/1751-7915.12739〉. 〈hal-01779031〉
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Camille Loiseau, Victor Hatte, Charlotte Andrieu, Loic Barlet, Audric Cologne, et al.. PanGeneHome : A Web Interface to Analyze Microbial Pangenomes. Journal of Bioinformatics, Computational and Systems Biology, Elyns Group, 2017. 〈hal-01786921〉
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E. Koji, O. V. Noah Ewoti, M. Onana, S. Tchakonté, C. Lontsi Djimeli, et al.. Influence of Anthropogenic Pollution on the Abundance Dynamics of Some Freshwater Invertebrates in the Coastal Area of Cameroon. Journal of Environmental Protection, 2017, 08 (07), pp.810-829. 〈10.4236/jep.2017.87051〉. 〈hal-01626980〉
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Anouk Zancarini, Isidora Echenique-Subiabre, Didier Debroas, Najwa Taïb, Catherine Quiblier, et al.. Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France. Scientific Reports, Nature Publishing Group, 2017, 7 (1), pp.4344. 〈10.1038/s41598-017-04016-w〉. 〈hal-01599307v2〉
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Alain Dejean, Hector Rodriguez-Perez, James M. Carpenter, Frédéric Azémar, Bruno Corbara. The predatory behavior of the Neotropical social wasp Polybia rejecta. Behavioural Processes, Elsevier, 2017, 140, pp.161-168. 〈10.1016/j.beproc.2017.05.011〉. 〈hal-01533217〉
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E. Dumas, M. Giraudo, Eric Goujon, M. Halma, E. Knhili, et al.. Fate and ecotoxicological impact of new generation herbicides from the triketone family: An overview to assess the environmental risks. Journal of Hazardous Materials, Elsevier, 2017, 325, pp.136-156. 〈10.1016/j.jhazmat.2016.11.059〉. 〈hal-01479524〉
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Louis Carles, Muriel Joly, Frédérique Bonnemoy, Martin Leremboure, Isabelle Batisson, et al.. Identification of sulfonylurea biodegradation pathways enabled by a novel nicosulfuron-transforming strain Pseudomonas fluorescens SG-1: toxicity assessment and effect of formulation.. Journal of Hazardous Materials, Elsevier, 2017, 324, pp.184-193. 〈10.1016/j.jhazmat.2016.10.048〉. 〈hal-01543326〉
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Amandine Cian, Dima El Safadi, Marwan Osman, Romain Moriniere, Nausicaa Gantois, et al.. Molecular Epidemiology of Blastocystis sp. in Various Animal Groups from Two French Zoos and Evaluation of Potential Zoonotic Risk. PLoS ONE, Public Library of Science, 2017, 12 (1), pp.e0169659. 〈hal-01572015〉
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Guillaume Kairo, David G. Biron, Faten Ben Abdelkader, Marc Bonnet, Sylvie Tchamitchian, et al.. Nosema ceranae, Fipronil and their combination compromise honey bee reproduction via changes in male physiology. Scientific Reports, Nature Publishing Group, 2017, 7, 14 p. 〈10.1038/s41598-017-08380-5〉. 〈hal-01605612〉
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Abdel Belkorchia, Jean-François Pombert, Valérie Polonais, Nicolas Parisot, Frédéric Delbac, et al.. Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes. DNA Research, Oxford University Press (OUP), 2017, 24 (3), pp.251-260. 〈10.1093/dnares/dsx002〉. 〈hal-01594835〉
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Céline Leroy, Frédéric Petitclerc, Jérôme Orivel, B. Corbara, J.-F. Carrias, et al.. The influence of light, substrate and seed origin on the germination and establishment of an ant-garden bromeliad. Plant Biology, Wiley, 2017, 19 (1), pp.70-78. 〈10.1111/plb.12452〉. 〈hal-01606565〉
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Angia Sriram Pradeep Ram, Jitendra Keshri, Paul Alain Nana, Telesphore Sime-Ngando. Taxonomical resolution and distribution of bacterioplankton along the vertical gradient reveals pronounced spatio-temporal patterns in contrasted temperate freshwater Lakes.. Water Research, IWA Publishing, 2017. 〈hal-01624245〉
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Louis Carles, Florent Rossi, Muriel Joly, Pascale Besse-Hoggan, Isabelle Batisson, et al.. Biotransformation of herbicides by aquatic microbial communities associated to submerged leaves. . Environmental Science and Pollution Research, Springer Verlag, 2017, 24, pp.3664-3674. 〈10.1007/s11356-016-8035-9〉. 〈hal-01546123〉
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Marc Ruivard, Marc Pineton de Chambrun, Charles-Edouard Luyt, Francois Beloncle, Marie Gousseff, et al.. The Clinical Picture of Severe Systemic Capillary-Leak Syndrome Episodes Requiring ICU Admission. Critical Care Medicine, Lippincott, Williams & Wilkins, 2017, 45 (7), pp.1216 - 1223. 〈10.1097/CCM.0000000000002496〉. 〈hal-01656772〉
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Mylène Hugoni, Agnes Vellet, Didier Debroas. Unique and highly variable bacterial communities inhabiting the surface microlayer of an oligotrophic lake. Aquatic Microbial Ecology, Inter Research, 2017, 79 (2), pp.115-125. 〈10.3354/ame01825〉. 〈hal-01608667〉
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Alain Dejean, Frédéric Petitclerc, Arthur Compin, Frédéric Azémar, Bruno Corbara, et al.. Hollow Internodes Permit a Neotropical Understory Plant to Shelter Multiple Mutualistic Ant Species, Obtaining Protection and Nutrient Provisioning (Myrmecotrophy). American Naturalist, University of Chicago Press, 2017, 190 (5), pp.E124 - E131. 〈10.1086/693782〉. 〈hal-01851984〉
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Florent Rossi, Joan Artigas, Clarisse Mallet. Structural and functional responses of leaf-associated fungal communities to chemical pollution in streams. Freshwater Biology, Wiley, 2017, 62 (7), pp.1207-1219. 〈10.1111/fwb.12937〉. 〈hal-01808289〉
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Maiko Kagami, Yasumichi Motoki, Hélène Masclaux, Alexandre Bec. Carbon and nutrients of indigestible pollen are transferred to zooplankton by chytrid fungi. Freshwater Biology, Wiley, 2017. 〈hal-01515596〉
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F Enault, A Briet, L Bouteille, S Roux, Mb Sullivan, et al.. Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses.. ISME Journal, Nature Publishing Group, 2017. 〈hal-01557484〉
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Apostolos-Manuel Koussoroplis, Sylvain Pincebourde, Alexander Wacker. Understanding and predicting physiological performance of organisms in fluctuating and multifactorial environments. Ecological monographs, Ecological Society of America, 2017, 87 (2), pp.178-197. 〈10.1002/ecm.1247〉. 〈hal-01693385〉
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Wafa Ibn Saied, Bertrand Souweine, Maite Garrouste-Orgeas, Stephane Ruckly, Michael Darmon, et al.. Respective impact of implementation of prevention strategies, colonization with multiresistant bacteria and antimicrobial use on the risk of early- and late-onset VAP: An analysis of the OUTCOMEREA network. PLoS ONE, Public Library of Science, 2017, 12 (11), pp.e0187791. 〈10.1371/journal.pone.0187791〉. 〈hal-01729757〉
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Rebeca Martin Rosique, Florian Chain, Sylvie Miquel, Jean-Paul Motta, Nathalie Vergnolle, et al.. Using murine colitis models to analyze probiotics–host interactions. FEMS Microbiology Reviews, Wiley-Blackwell, 2017, 41 (Supp_1), pp.S49-S70. 〈10.1093/femsre/fux035〉. 〈hal-01602302〉
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Leandro Benevides, Sriti Burman, Rebeca Martin, Véronique Robert, Muriel Thomas, et al.. New Insights into the Diversity of the Genus Faecalibacterium. Frontiers in Microbiology, Frontiers Media, 2017, 8, pp.1790. 〈10.3389/fmicb.2017.01790〉. 〈hal-01617957〉
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Christiane Forestier, Elisabeth Billard, Geneviève Milon, Pascale Gueirard. Unveiling and Characterizing Early Bilateral Interactions between Biofilm and the Mouse Innate Immune System. Frontiers in Microbiology, Frontiers Media, 2017, 8, pp.2309. 〈10.3389/fmicb.2017.02309〉. 〈hal-01681274〉
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Conference papers

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Marc Buee, Matthieu Barret, Maria Bernard, Didier Debroas, Isabelle Domaizon, et al.. Microbial metacommunity: a METABAR coding approach. 2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France. 2017. 〈hal-01607836〉
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Book sections

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David Georges Biron, D Nedelkov, D Missée, P Holzmuller. Proteomics and host-pathogen interactions: a bright future?. Genetics and Evolution of Infectious Diseases, Second Edition, M. Tibayrenc (ed), Chapter 11, pp. 227-255, 2017. 〈hal-01624199〉
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Iris Eouzan, L Garnery, Telesphore Sime-Ngando, David Georges Biron. Les pesticides, la cause du déclin de l’abeille domestique ?. Ecotoxicologie des communautés et impacts sur les fonctions des écosystèmes. Eds Bernard C, Mougin C, Pery A, ISTE Editions, Paris., 2017. 〈hal-01624222〉
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Sanchez Mi, Iris Eouzan, Pais-Costa Aj, David Georges Biron. Interactions entre parasites et pollution dans un monde en mutation. Ecotoxicologie des communautés et impacts sur les fonctions des écosystèmes. Eds Bernard C, Mougin C, Pery A, ISTE Editions, Paris., 2017. 〈hal-01624229〉
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Poster communications

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Nastasia Prybylski, Cédric Delattre, Guillaume Pierre, Céline Laroche, Philippe Michaud, et al.. Study of fused- chitinase-glucuronan lyase enzymes with antifungal potential. International Bioprocessing Association-7th International Forum on Industrial Bioprocesses, May 2017, Wuxi, China. 〈hal-01658522〉
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Theses

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Laurianne Paris. Analyse des interactions entre le parasite Nosema ceranae et l'insecticide fipronil chez l'abeille domestique Apis mellifera. Agronomie. Université Clermont Auvergne, 2017. Français. 〈NNT : 2017CLFAC062〉. 〈tel-01764895〉
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Preprints, Working Papers, ...

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Alexandre Bazin, Didier Debroas, Engelbert Mephu Nguifo. A De Novo Robust Clustering Approach for Amplicon-Based Sequence Data. 2017. 〈hal-01447699v2〉
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2016

Journal articles

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Frédéric Chamieh, Anne-Margaux Collignon, Benjamin R. Coyac, Julie Lesieur, Sandy Ribes, et al.. Accelerated craniofacial bone regeneration through dense collagen gel scaffolds seeded with dental pulp stem cells. Scientific Reports, Nature Publishing Group, 2016, 6 (1), 〈10.1038/srep38814〉. 〈hal-01624254〉
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A. Brown, A. Vallenari, T. Prusti, H. De Bruijne, F. Mignard, et al.. Gaia Data Release 1. Summary of the astrometric, photometric, and survey properties. Astronomy and Astrophysics - A&A, EDP Sciences, 2016, 595, pp.id.A2. 〈10.1051/0004-6361/201629512〉. 〈hal-01407396〉
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Nathanael Lampe, David Biron, Jeremy M. C. Brown, Sébastien Incerti, Pierre Marin, et al.. Simulating the Impact of the Natural Radiation Background on Bacterial Systems: Implications for Very Low Radiation Biological Experiments. PLoS ONE, Public Library of Science, 2016, 11 (11), 〈10.1371/journal.pone.0166364〉. 〈hal-01610267〉
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C. Jacomet, G. Illes, F. Kwiatkowski, M. Vidal, N. Mrozek, et al.. Prevalence of aortic valve dystrophy and insufficiency in a cohort of 255 HIV-positive patients followed-up in a cardiology department between 2012 and 2014. International Journal of Cardiology, Elsevier, 2016, 220, pp.82 - 86. 〈10.1016/j.ijcard.2016.06.237〉. 〈hal-01675311〉
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Anne-Catherine Lehours, Anne-Hélène Le Jeune, Jean-Pierre Aguer, Régis Céréghino, Bruno Corbara, et al.. Unexpectedly high bacteriochlorophyll a concentrations in neotropical tank bromeliads. Environmental Microbiology Reports, Wiley, 2016, 8 (5), pp.689 - 698. 〈10.1111/1758-2229.12426〉. 〈hal-01623623〉
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S. Samoudi, D. Latour, J. Robin, M. Sabart, Benjamin Misson, et al.. Horizontal distribution of the cell abundance and toxicity of Microcystis in a hypereutrophic Moroccan reservoir. Contemporary Problems of Ecology, 2016, 9 (5), pp.554 - 562. 〈10.1134/S1995425516050139〉. 〈hal-01826036〉
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Benjamin Legrand, Jerome Lesobre, Jonathan Colombet, Delphine Latour, Marion Sabart. Molecular tools to detect anatoxin-a genes in aquatic ecosystems: Toward a new nested PCR-based method. Harmful Algae, Elsevier, 2016, 58, 〈10.1016/j.hal.2016.07.002〉. 〈hal-01360406〉
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Mathilde Jeanbille, Jérôme Gury, Robert Duran, Jacek Tronczynski, Jean-François Ghiglione, et al.. Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments. Frontiers in microbiology, Frontiers Research Foundation, 2016, 7, pp.1303. 〈10.3389/fmicb.2016.01303〉. 〈hal-01599382v2〉
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S. Pradeep Ram, S. Chaibi-Slouma, J. Keshri, J. Colombet, T. Sime-Ngando. Functional Responses of Bacterioplankton Diversity and Metabolism to Experimental Bottom-Up and Top-Down Forcings. Microbial Ecology, Springer Verlag, 2016, 72 (2), pp.347 - 358. 〈10.1007/s00248-016-0782-0〉. 〈hal-01623632〉
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Damien Balestrino, Mercédès Quintana, Nicolas Charbonnel, Christiane Forestier, Claire Lartigue, et al.. Compatibility of Injectable Anticoagulant Agents in Ethanol; In Vitro Antibiofilm Activity and Impact on Polyurethane Catheters of Enoxaparin 400 U/mL in 40% v/v Ethanol. PLoS ONE, Public Library of Science, 2016, 11 (7), 〈10.1371/journal.pone.0159475〉. 〈hal-01394030〉
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Jérôme Ory, Geneviève Bricheux, Anne Togola, Jean Louis Bonnet, Florence Donnadieu-Bernard, et al.. Ciprofloxacin residue and antibiotic-resistant biofilm bacteria in hospital effluent. Environmental Pollution (1970), Elsevier Science, 2016, 214, 〈10.1016/j.envpol.2016.04.033〉. 〈hal-01342460〉
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Léo Chassiot, Emmanuel Chapron, Christian Di Giovanni, Patrick Albéric, Patrick Lajeunesse, et al.. Extreme events in the sedimentary record of maar Lake Pavin: Implications for natural hazards assessment in the French Massif Central. Quaternary Science Reviews, Elsevier, 2016, 141, pp.9-25. 〈10.1016/j.quascirev.2016.03.020〉. 〈insu-01303646〉
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Louis Carles, Pascale Besse-Hoggan, Muriel Joly, Armelle Vigouroux, Solange Moréra, et al.. Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione.. Biochemical Journal, Portland Press, 2016, pp.1443-53. 〈10.1042/BJ20151366〉. 〈hal-01457189〉
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Christophe Audebert, Gaël Even, Amandine Cian, Dima El Safadi, Gabriela Certad, et al.. Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota. Scientific Reports, Nature Publishing Group, 2016, 6, 〈10.1038/srep25255〉. 〈hal-01363189〉
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Sylvie Miquel, Rosyne Lagrafeuille, Bertrand Souweine, Christiane Forestier. Anti-biofilm Activity as a Health Issue. Frontiers in Microbiology, Frontiers Media, 2016, 7, pp.592. 〈10.3389/fmicb.2016.00592〉. 〈hal-01394090〉
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Marwan Osman, Dima El Safadi, Amandine Cian, Sadia Benamrouz, Céline Nourrisson, et al.. Correction: Prevalence and Risk Factors for Intestinal Protozoan Infections with Cryptosporidium, Giardia, Blastocystis and Dientamoeba among Schoolchildren in Tripoli, Lebanon. PLoS Neglected Tropical Diseases, Public Library of Science, 2016, 10 (4), 〈10.1371/journal.pntd.0004643〉. 〈hal-01363187〉
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M Krupovic, Be Dutilh, Em Adriaenssens, J Wittmann, Fk Vogensen, et al.. Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee.. Archives of Virology, Springer Verlag, 2016, 161 (4), pp.1095-1099. 〈10.1007/s00705-015-2728-0〉. 〈hal-01557489〉
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Thomas Jephcott, Télesphore Sime-Ngando, Frank H. Gleason, Deborah J. Macarthur. Host–parasite interactions in food webs: Diversity, stability, and coevolution. Food Webs, C.A. Layman, 2016, 6, pp.1 - 8. 〈10.1016/j.fooweb.2015.12.001〉. 〈hal-01623614〉
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Marwan Osman, Dima El Safadi, Amandine Cian, Sadia Benamrouz, Céline Nourrisson, et al.. Prevalence and Risk Factors for Intestinal Protozoan Infections with Cryptosporidium, Giardia, Blastocystis and Dientamoeba among Schoolchildren in Tripoli, Lebanon. PLoS Neglected Tropical Diseases, Public Library of Science, 2016, 10 (3), 〈10.1371/journal.pntd.0004496〉. 〈hal-01363185〉
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M. Jobard, J. Pessiot, R. Nouaille, G. Fonty, T. Sime-Ngando. Microbial diversity in support of anaerobic biomass valorization. Critical Reviews in Biotechnology, Taylor & Francis, 2016, 37 (1), pp.1 - 10. 〈10.3109/07388551.2015.1100584〉. 〈hal-01624065〉
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Angia Sriram Pradeep Ram, Jonathan Colombet, Fanny Perrière, Antoine Thouvenot, Télesphore Sime-Ngando. Viral Regulation of Prokaryotic Carbon Metabolism in a Hypereutrophic Freshwater Reservoir Ecosystem (Villerest, France). Frontiers in Microbiology, Frontiers Media, 2016, 7, 〈10.3389/fmicb.2016.00081〉. 〈hal-01623641〉
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C. Lontsi Djimeli, A. Tamsa Arfao, V Rossi, N Nsulem, V. Raspal, et al.. Impact of two disinfectants on detachment of Enterococcus faecalis from polythene in aquatic microcosm. Research in Biotechnology, 2016, 7 (1), 〈10.19071/rib.2016.v7.2981〉. 〈hal-01626931〉
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F Laude, F Valot, F Desoubeaux, F Argy, F Nourrisson, et al.. Is real-time PCR-based diagnosis similar in performance to routine parasitological examination for the identification of Giardia intestinalis , Cryptosporidium parvum / Cryptosporidium hominis and Entamoeba histolytica from stool samples? Evaluation of a new commercial multiplex PCR assay and literature review. Clinical Microbiology and Infection, Elsevier for the European Society of Clinical Microbiology and Infectious Diseases, 2016, 22 (2), pp.190.e1 - 190.e8. 〈10.1016/j.cmi.2015.10.019〉. 〈hal-01698271〉
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Imen Louati, Noémie Pascault, Didier Debroas, Cécile Bernard, Jean-François Humbert, et al.. Correction: Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus. PLoS ONE, Public Library of Science, 2016, 11 (1), pp.e0146866. 〈10.1371/journal.pone.0146866〉. 〈hal-01360257〉
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O Mobili, C Lontsi Djimeli, L Moungang, O Allaahdin, A Tamasa Arfao, et al.. Microbial treatment of water containing the bacteria Enterococcus faecalis and Escherichia coli in microcosm using Artemesia annua plant extract: Hierarchical order of some abiotic factors affecting cell’s cultivability. European Journal of Biotechnology and Bioscience Onlinebiosciencejournals.com Volume, 2016, 4 (9), pp.16-26. 〈hal-01394093〉
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A Tamsa Arfao, C Lontsi Djimeli, O Noah Ewoto, Geneviève Bricheux, M Nola, et al.. Detachment of adhered enteropathogenic Escherichia coli cells from polythene fragments immersed in aquatic microcosm using Eucalyptus microcorys extract (Myrtaceae). Current Research in Microbiology and Biotechnology, 2016, 4 (3), pp.847-857. 〈hal-01394098〉
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Antoine Arfao, Chrétien Djimeli, Olive Ewoti, Geneviève Bricheux, Moïse Nola, et al.. Detachment of adhered enteropathogenic Escherichia coli cells from polythene fragments immersed in aquatic microcosm using Eucalyptus microcorys extract (Myrtaceae). Current Research in Microbiology and Biotechnology, Aizeon publishers, 2016, 4 (3), pp.847-857. 〈http://crmb.aizeonpublishers.net/content/2016/3/no3.html〉. 〈hal-01392650〉
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O. B. Mobili, C. Lontsi Djimeli, L. M. Moungang, O Allaadhin, A Tamsa Arfao, et al.. Microbial treatment of water containing the bacteria Enterococcus faecalis and Escherichia coli in microcosm using Artemesia annua plant extract: Hierarchical order of some abiotic factors affecting cell’s cultivability. European Journal of Biotechnology and Bioscience, 2016, 4 (9), pp.16-26. 〈http://www.biosciencejournals.com/archives/?year=2016&vol=4&issue=9〉. 〈hal-01392643〉
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Anne Mercier, Joanne Bertaux, Jérôme Lesobre, Kevin Gravouil, Julien Verdon, et al.. Characterization of biofilm formation in natural water subjected to low-frequency electromagnetic fields.. Biofouling, Taylor & Francis, 2016, 32 (3), pp.287-99. 〈hal-01427807〉
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P. Duval, C. Chatelard-Chauvin, C. Gayard, E. Rifa, P. Bouchard, et al.. Microbial dynamics in industrial blue veined cheeses in different packaging. International Dairy Journal, Elsevier, 2016, 56, pp.198 - 207. 〈10.1016/j.idairyj.2016.01.024〉. 〈hal-01393545〉
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Patrice Baa-Puyoulet, Nicolas Parisot, Gérard Febvay, Jaime Huerta-Cepas, Augusto F Vellozo, et al.. ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. Database - The journal of Biological Databases and Curation, Oxford University Press, 2016, 〈10.1093/database/baw081〉. 〈hal-01352558〉
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Charles Vorilhon, Christophe Massard, Vincent Raspal, Yves Sibaud, Christiane Forestier, et al.. Feasibility of a Chronic Foreign Body Infection Model Studying the Influence of TiO2 Nanotube Layers on Bacterial Contamination. Journal of Biomaterials and Nanobiotechnology, Scientific Research, 2016, 07 (01), pp.45 - 54. 〈10.4236/jbnb.2016.71006〉. 〈hal-01829437〉
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Céline Leroy, Jean-François Carrias, Régis Céréghino, Bruno Corbara. The contribution of microorganisms and metazoans to mineral nutrition in bromeliads. Journal of Plant Ecology, 2016, 9 (3), pp.241-255. 〈10.1093/jpe/rtv052〉. 〈hal-01532637〉
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Cyril Guilhen, Nicolas Charbonnel, Nicolas Parisot, Nathalie Gueguen, Agnès Iltis, et al.. Transcriptional profiling of Klebsiella pneumoniae defines signatures for planktonic, sessile and biofilm-dispersed cells. BMC Genomics, BioMed Central, 2016, 17 (1), 〈10.1186/s12864-016-2557-x〉. 〈hal-01394069〉
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T Bertran, P Brachet, M Vareille-Delarbre, J Falenta, A Dosgilbert, et al.. Slight Pro-Inflammatory Immunomodulation Properties of Dendritic Cells by Gardnerella vaginalis: The “Invisible Man” of Bacterial Vaginosis?. Journal of Immunology Research, Hindawi Publishing Corporation, 2016, 2016. 〈hal-01394040〉
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Thomas Bertran, Patrick Brachet, Marjolaine Vareille, Julie Falenta, Annie Dosgilbert, et al.. Slight Pro-Inflammatory Immunomodulation Properties of Dendritic Cells byGardnerella vaginalis: The “Invisible Man” of Bacterial Vaginosis?. Journal of Immunology Research, Hindawi Publishing Corporation, 2016, pp.1-13. 〈10.1155/2016/9747480〉. 〈hal-01595704〉
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Jean-Louis Reyss, Arnaud Mangeret, Christelle Courbet, Sylvain Bassot, Gilles Alcalde, et al.. Estimation of sedimentation rates based on the excess of radium 228 in granitic reservoir sediments. Journal of Environmental Radioactivity, Elsevier, 2016, 162-163, pp.8 - 13. 〈10.1016/j.jenvrad.2016.04.032〉. 〈hal-01587405〉
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Simon Roux, Francois Enault, Viviane Ravet, Jonathan Colombet, Yvan Bettarel, et al.. Analysis of metagenomic data reveals common features of halophilic viral communities across continents. Environmental Microbiology, Wiley-Blackwell, 2016, 18 (3), pp.889 - 903. 〈10.1111/1462-2920.13084〉. 〈pasteur-01375524〉
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Olivier Crouzet, Franck Poly, Frédérique Bonnemoy, David Bru, Isabelle Batisson, et al.. Functional and structural responses of soil N-cycling microbial communities to the herbicide mesotrione: a dose-effect microcosm approach. Environmental Science and Pollution Research, Springer Verlag, 2016, 23 (5), pp.4207 - 4217. 〈10.1007/s11356-015-4797-8〉. 〈hal-01394067〉
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C. Nourrisson, I. Wawrzyniak, A. Cian, Valerie Livrelli, F. Viscogliosi, et al.. On Blastocystis secreted cysteine proteases: a legumain-activated cathepsin B increases paracellular permeability of intestinal Caco-2 cell monolayers. Parasitology, Cambridge University Press (CUP), 2016, 143 (13), pp.1713-1722. 〈10.1017/S0031182016001396〉. 〈hal-01606978〉
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David Lopez, Maroua Ben Amira, Daniel Brown, Beatriz Muries, Nicole Brunel-Michac, et al.. The Hevea brasiliensis XIP aquaporin subfamily: genomic, structural and functional characterizations with relevance to intensive latex harvesting. Plant Molecular Biology, Springer Verlag (Germany), 2016, 91 (4-5), pp.375 - 396. 〈hal-01378944〉
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Thomas G. Jephcott, Catharina Alves-De-Souza, Frank H. Gleason, Floris F. Ogtrop, Télesphore Sime-Ngando, et al.. Ecological impacts of parasitic chytrids, syndiniales and perkinsids on populations of marine photosynthetic dinoflagellates. Fungal Ecology, Elsevier, 2016, 19, pp.47-58. 〈10.1016/j.funeco.2015.03.007〉. 〈hal-01253977〉
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Florence Donnadieu, Pascale Besse-Hoggan, Christiane Forestier, Joan Artigas. Influence of streambed substratum composition on stream microbial communities exposed to the fungicide tebuconazole. Freshwater Biology, Wiley, 2016, 61, pp.2026-2036. 〈10.1111/fwb.12679〉. 〈hal-01479184〉
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Éric Capo, Didier Debroas, Fabien Arnaud, Typhaine Guillemot, Vincent Bichet, et al.. Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA. Molecular Ecology, Wiley, 2016, 25 (23), pp.5925-5943 〈10.1111/mec.13893〉. 〈hal-01568922〉
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Kada Klouche, Samir Jaber, Jean-Louis Trouillet, Fabrice Bruneel, Laurent Argaud, et al.. Empirical Micafungin Treatment and Survival Without Invasive Fungal Infection in Adults With ICU-Acquired Sepsis, Candida Colonization, and Multiple Organ Failure The EMPIRICUS Randomized Clinical Trial. Journal of the American Medical Association, American Medical Association (AMA), 2016, 316 (15), pp.1555--1564. 〈10.1001/jama.2016.14655〉. 〈hal-01405822〉
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S. Pesce, O. Zoghlami, C. Margoum, J. Artigas, A. Chaumot, et al.. Combined effects of drought and the fungicide tebuconazole on aquatic leaf litter decomposition. Aquatic Toxicology, Elsevier, 2016, 173, pp.120-131. 〈10.1016/j.aquatox.2016.01.012〉. 〈hal-01804836〉
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Corinne Biderre-Petit, Eric Dugat-Bony, Mickaël Mege, Nicolas Parisot, Lorenz Adrian, et al.. Distribution of dehalococcoidia in the anaerobic deep water of a remote meromictic crater lake and detection of dehalococcoidia-derived reductive dehalogenase homologous genes. PLoS ONE, Public Library of Science, 2016, 11 (1), 〈10.1371/journal.pone.0145558〉. 〈hal-01599389v2〉
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Benoit Keraval, Anne Catherine Lehours, Jonathan Colombet, Christian Amblard, Gaël Alvarez, et al.. Soil carbon dioxide emissions controlled by an extracellular oxidative metabolism identifiable by its isotope signature. Biogeosciences, European Geosciences Union, 2016, 13 (22), pp.6353 - 6362. 〈10.5194/bg-13-6353-2016〉. 〈hal-01595310〉
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Claire Marquès, Christine Franceschi, Valérie Collin, Frédéric Laurent, Sonia Chatellier, et al.. Genome Sequence of a Clinical Staphylococcus aureus Strain from a Prosthetic Joint Infection. Genome Announcements, American Society for Microbiology, 2016, 4 (2), pp. e00198-16. 〈10.1128/genomeA.00198-16〉. 〈hal-01394081〉
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Damien Costa, Anne Mercier, Kevin Gravouil, Jérôme Lesobre, Julien Verdon, et al.. Occurrence and diversity of both bacterial and fungal communities in dental unit waterlines subjected to disinfectants.. Foodborne Pathogens and Disease, Mary Ann Liebert, 2016, 74 (7). 〈hal-01427811〉
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Flore Ballaud, Alexis Dufresne, Andre-Jean Francez, Jonathan Colombet, Télesphore Sime-Ngando, et al.. Dynamics of Viral Abundance and Diversity in a Sphagnum-Dominated Peatland: Temporal Fluctuations Prevail Over Habitat. Frontiers in Microbiology, Frontiers Media, 2016, 6, pp.1494. 〈10.3389/fmicb.2015.01494〉. 〈hal-01263117〉
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Lin Zhu, Anouk Zancarini, Imen Louati, Silvia De Cesare, Charlotte Duval, et al.. Bacterial communities associated with four cyanobacterial genera display structural and functional differences: evidence from an experimental approach. Frontiers in Microbiology, Frontiers Media, 2016, 7, pp.1-11. 〈10.3389/fmicb.2016.01662〉. 〈hal-01602443〉
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Cécile Lepère, Isabelle Domaizon, Mylène Hugoni, Agnès Vellet, Didier Debroas. Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France). Frontiers in Microbiology, Frontiers Media, 2016, 7 (130), 〈10.3389/fmicb.2016.00130〉. 〈hal-01599386v2〉
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Pierre Simonet, Karen Gaget, Nicolas Parisot, Gabrielle Duport, Marjolaine Rey, et al.. Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids. Scientific Reports, Nature Publishing Group, 2016, 6, 〈10.1038/srep34321〉. 〈hal-01388523〉
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T. Prusti, H. De Bruijne, A. Brown, A. Vallenari, C. Babusiaux, et al.. The Gaia mission. Astronomy and Astrophysics - A&A, EDP Sciences, 2016, 595, pp.id.A1. 〈10.1051/0004-6361/201629272〉. 〈hal-01409603〉
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Conference papers

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Olivier Crouzet, Christelle Marrauld, Pierre-Alain Maron, Frédéric Rimet, Christian Mougin, et al.. The significance of soil microalgae and cyanobacteria to assess pesticide stresses, in agricultural soils. SETAC Europe 26th Annual Meeting, May 2016, Nantes, France. 2016. 〈hal-01531658〉
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Olivier Crouzet, Laurent Consentino, Christelle Marrauld, Clarisse Mallet, Pierre-Alain Maron, et al.. Les microalgues et cyanobactéries des sols : quels apports pour l’écotoxicologie terrestre. 3ème journée Ecotoxicomic, Mar 2016, Valence, France. 2016. 〈hal-01608368〉
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Book sections

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Juan J Quereda, Martin Sachse, Damien Balestrino, Théodore Grenier, Jennifer Fredlund, et al.. Assessing Vacuolar Escape of Listeria Monocytogenes.. Collin M. Bacterial Pathogenesis, 1535, Humana Press, New York, NY, pp.173-195, 2016, Methods in Molecular Biology, 978-1-4939-6671-4. 〈10.1007/978-1-4939-6673-8_11〉. 〈pasteur-01574133〉
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Gisèle Bronner, Didier Debroas, Francois Enault, Mylène Hugoni, Isabelle Jouan-Dufournel, et al.. Study of microorganisms and virus in aquatic ecosystems by metagenetic and metagenomic approaches.. Lake Pavin: History, biogeochemistry and sedimentology of a deep meromictic crater lake, 2016. 〈hal-01623825〉
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Telesphore Sime-Ngando, Yvan Bettarel, Jonathan Colombet, Stéphanie Palesse, Angia Sriram Pradeep Ram, et al.. Lake Pavin: A pioneer site for ecological studies of freshwater viruses. Lake Pavin: History, biogeochemistry and sedimentology of a deep meromictic crater lake, 2016. 〈hal-01623848〉
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Anne Catherine Lehours, Guillaume Borrel, Nicole Morel-Desrosiers, Corinne Bardot, Vincent Grossi, et al.. Anaerobic microbial communities and processes involved in the methane cycle in freshwater lakes - a focus on lake Pavin.. Lake Pavin: History, biogeochemistry and sedimentology of a deep meromictic crater lake, 2016. 〈hal-01623844〉
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Telesphore Sime-Ngando, Mélanie Gerphagnon, Jonathan Colombet, Marlène Jobard, Emilie Lefèvre, et al.. Molecular diversity studies in Lake Pavin reveal the ecological importance of parasitic true fungi in the plankton. Lac Pavin - History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake, 2016. 〈hal-01623857〉
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Jean-François Carrias, Christian Amblard, Telesphore Sime-Ngando. The significance of transparent exopolymeric particles (TEP) for microorganisms in Lake Pavin.. Lac Pavin - History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake, 2016. 〈hal-01623860〉
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Jean-François Carrias, Christian Amblard, Gilles Bourdier, Telesphore Sime-Ngando. The importance of phagotrophic protists in Lake Pavin. Lac Pavin - History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake., 2016. 〈hal-01624028〉
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Eric Dugat-Bony, Pierre Peyret, Corinne Biderre-Petit. New insights into the microbial contribution to the chlorine cycle in aquatic ecosystems. Lake Pavin, Springer International Publishing, 2016, 978-3-319-39960-7. 〈10.1007/978-3-319-39961-4_17〉. 〈hal-01533913〉
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Dov Jean-François Corenblit, Bruno Corbara, Johannes Steiger. Biogeomorphic ecosystems within stressful and disturbed environments: a focus on termites and pioneer plants. Johnson E.; Martin Y. A Biogeoscience Approach to Ecosystems, Cambridge University Press, pp.456-474, 2016. 〈hal-01576286〉
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Léo Chassiot, E Chapron, Yannick Miras, Markus J. Schwab, Patrick Albéric, et al.. Lake Pavin Paleolimnology and Event Stratigraphy. Lake Pavin, history, geology, biogeochemistry and sedimentology of a deep meromictic maar lake, Springer, pp.381 - 406, 2016, 〈10.1007/978-3-319-39961-4_23〉. 〈hal-01447131〉
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Books

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Telesphore Sime-Ngando, Pierre Boivin, Emmanuel Chapron, Didier Jezequel, Michel Meybeck. Lac Pavin – History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake. . 2016. 〈hal-01623853〉
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Theses

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Louis Carles. Devenir de mélanges de pesticides : étude des voies de biodégradation et développement d'une méthode préventive de bioremédiation. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2016. Français. 〈NNT : 2016CLF22759〉. 〈tel-01544582〉
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Rosyne Lagrafeuille. Activités anti-biofilm de Lactobacillus vis-à-vis de Klebsiella Pneumoniae. Médecine humaine et pathologie. Université d'Auvergne - Clermont-Ferrand I, 2016. Français. 〈NNT : 2016CLF1PP03〉. 〈tel-01661354v2〉
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Damien Mouly. Ecologie de la santé humaine : contribution à l'étude et à la surveillance des épidémies de gastro-entérite aigüe d'origine hydrique. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2016. Français. 〈NNT : 2016CLF22706〉. 〈tel-01479931〉
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2015

Journal articles

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Christophe Vinsonneau, Emma Allain-Launay, Clarisse Blayau, Michael Darmon, Damien Ducheyron, et al.. Renal replacement therapy in adult and pediatric intensive care: Recommendations by an expert panel from the French Intensive Care Society (SRLF) with the French Society of Anesthesia Intensive Care (SFAR) French Group for Pediatric Intensive Care Emergencies (GFRUP) the French Dialysis Society (SFD). Annals of Intensive Care, BioMed Central, 2015, 5 (1), pp.58. 〈10.1186/s13613-015-0093-5〉. 〈hal-01274913〉
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Dima El Safadi, Amandine Cian, Céline Nourrisson, Bruno Pereira, Christelle Morelle, et al.. Prevalence, risk factors for infection and subtype distribution of the intestinal parasite Blastocystis sp. from a large-scale multi-center study in France.. BMC Infectious Diseases, BioMed Central, 2015, 16 (1), pp.451. 〈10.1186/s12879-016-1776-8 〉. 〈hal-01368323〉
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M. Roussel, A. Villay, F. Delbac, Céline Laroche, P. Michaud, et al.. Antimicrosporidian activity of sulphated polysaccharides from algae and their potential to control honeybee nosemosis. Carbohydrate Polymers, Elsevier, 2015, 133, 〈10.1016/j.carbpol.2015.07.022〉. 〈hal-01247322〉
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A. Laude, S. Valot, G. Desoubeaux, N. Argy, C. Nourrisson, et al.. Is real-time PCR-based diagnosis similar in performance to routine parasitological examination for the identification of Giardia intestinalis, Cryptosporidium parvum/Cryptosporidium hominis and Entamoeba histolytica from stool samples? Evaluation of a new commercial multiplex PCR assay and literature review. Clinical Microbiology and Infection, Elsevier for the European Society of Clinical Microbiology and Infectious Diseases, 2015, 〈10.1016/j.cmi.2015.10.019〉. 〈hal-01247492〉
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Eric Capo, Didier Debroas, Fabien Arnaud, Isabelle Domaizon. Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity. Microbial Ecology, Springer Verlag, 2015, 70 (4), 〈10.1007/s00248-015-0627-2〉. 〈hal-01254671〉
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Imen Louati, Noémie Pascault, Didier Debroas, Cécile Bernard, Jean-François Humbert, et al.. Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus. PLoS ONE, Public Library of Science, 2015, 10 (11), pp.e0140614. 〈10.1371/journal.pone.0140614〉. 〈hal-01272957〉
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Behzad Mostajir, Cécile Roques, Corinne Bouvier, Thierry Bouvier, Éric Fouilland, et al.. Microbial food web structural and functional responses to oyster and fish as top predators. Marine Ecology Progress Series, Inter-Research, 2015, 535, pp.11-27. 〈http://www.int-res.com/journals/meps/meps-home/〉. 〈10.3354/meps11429〉. 〈hal-01199541〉
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Damien Costa, Anne Mercier, Kevin Gravouil, Jérôme Lesobre, Vincent Delafont, et al.. Pyrosequencing analysis of bacterial diversity in dental unit waterlines.. Water Research, IWA Publishing, 2015, 81, pp.223-31. 〈hal-01427407〉
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A Hidalgo-Galiana, M Monge, D G Biron, F Canals, I Ribera, et al.. Protein expression parallels thermal tolerance and ecologic changes in the diversification of a diving beetle species complex. Heredity, Nature Publishing Group, 2015, 116 (1), pp.114 - 123. 〈10.1038/hdy.2015.80〉. 〈hal-01623610〉
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Abdel Belkorchia, Cyrielle Gasc, Valérie Polonais, Nicolas Parisot, Nicolas Gallois, et al.. The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes. PLoS ONE, Public Library of Science, 2015, 10 (9), 〈10.1371/journal.pone.0139075〉. 〈hal-01247479〉
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Anne-Catherine Lehours, Christian Jeanthon. The hydrological context determines the beta-diversity of aerobic anoxygenic phototrophic bacteria in European Arctic seas but does not favor endemism. Frontiers in microbiology, Frontiers Research Foundation, 2015, 6, pp.638. 〈10.3389/fmicb.2015.00638〉. 〈hal-01218500〉
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Chérif Chetouhi, Johan Panek, Ludovic Bonhomme, Hicham Elalaoui, Catherine Texier, et al.. Cross-talk in host–parasite associations: What do past and recent proteomics approaches tell us?. Infection, Genetics and Evolution, Elsevier, 2015, 33, pp.84 - 94. 〈10.1016/j.meegid.2015.04.015〉. 〈hal-01406325〉
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Ivan Wawrzyniak, Damien Courtine, Marwan Osman, Christine Hubans-Pierlot, Amandine Cian, et al.. Draft genome sequence of the intestinal parasite Blastocystis subtype 4-isolate WR1. Genomics-based Drug Data Report, Prous Science Publishers, 2015, 4, 〈10.1016/j.gdata.2015.01.009〉. 〈hal-01247485〉
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Sébastien Bailly, Lila Bouadma, Elie Azoulay, Maité Garrouste Orgeas, Christophe Adrie, et al.. Failure of Empirical Systemic Antifungal Therapy in Mechanically Ventilated Critically Ill Patients. American Journal of Respiratory and Critical Care Medicine, American Thoracic Society, 2015, 191 (10), pp.1139 - 1146. 〈10.1164/rccm.201409-1701OC〉. 〈hal-01393561〉
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Sébastien Bailly, Lila Bouadma, Élie Azoulay, Maité Garrouste Orgeas, Christophe Adrie, et al.. Failure of Empirical Systemic Antifungal Therapy in Mechanically Ventilated Critically Ill Patients. American Journal of Respiratory and Critical Care Medicine, American Thoracic Society, 2015, 191 (10), pp.1139 - 1146. 〈10.1164/rccm.201409-1701OC〉. 〈hal-01680464〉
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Sébastien Bailly, Lila Bouadma, Elie Azoulay, Maité Garrouste Orgeas, Christophe Adrie, et al.. Failure of Empirical Systemic Antifungal Therapy in Mechanically Ventilated Critically Ill Patients. American Journal of Respiratory and Critical Care Medicine, American Thoracic Society, 2015, 191 (10), pp.1139 - 1146. 〈10.1164/rccm.201409-1701OC〉. 〈hal-01674388〉
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C. Nourrisson, R. N. Tan, C. Hennequin, L. Gibold, R. Bonnet, et al.. The MAST® D68C test: an interesting tool for detecting extended-spectrum β-lactamase (ESBL)-producing Enterobacteriaceae. European Journal of Clinical Microbiology and Infectious Diseases, Springer Verlag, 2015, 34 (5), 〈10.1007/s10096-014-2305-6〉. 〈hal-01247494〉
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Achim Quaiser, Alexis Dufresne, Flore Ballaud, Simon Roux, Yvan Zivanovic, et al.. Diversity and comparative genomics of Microviridae in Sphagnum-dominated peatlands. Frontiers in microbiology, Frontiers Research Foundation, 2015, 6, pp.375. 〈10.3389/fmicb.2015.00375〉. 〈hal-01149546〉
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Fida Khater, Damien Balestrino, Nicolas Charbonnel, Jean François Dufayard, Sylvain Brisse, et al.. In Silico Analysis of Usher Encoding Genes in Klebsiella pneumoniae and Characterization of Their Role in Adhesion and Colonization. PLoS ONE, Public Library of Science, 2015, 10 (3), 〈10.1371/journal.pone.0116215〉. 〈hal-01393629〉
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Simon Roux, François Enault, Viviane Ravet, Olivier Pereira, Matthew B. Sullivan. Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages. Frontiers in microbiology, Frontiers Research Foundation, 2015, 6, pp.199. 〈10.3389/fmicb.2015.00199〉. 〈hal-01254665〉
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Marion Sabart, Benjamin Misson, Marlène Jobard, Gisèle Bronner, Florence Donnadieu-Bernard, et al.. Genetic diversity along the life cycle of the cyanobacterium M icrocystis : highlight on the complexity of benthic and planktonic interactions. Environmental Microbiology, Wiley-Blackwell, 2015, 17 (3), pp.901 - 911. 〈10.1111/1462-2920.12555〉. 〈hal-01826039〉
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Didier Debroas, Mylène Hugoni, Isabelle Domaizon. Evidence for an active rare biosphere within freshwater protists community. Molecular Ecology Resources, Wiley/Blackwell, 2015, 24 (6), 〈10.1111/mec.13116〉. 〈hal-01245679〉
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J. Arce Funck, A. Bec, F. Perrière, V. Felten, M. Danger. Aquatic hyphomycetes: a potential source of polyunsaturated fatty acids in detritus-based stream food webs. Fungal Ecology, Elsevier, 2015, 13, pp.205-210. 〈10.1016/j.funeco.2014.09.004〉. 〈hal-01159541〉
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A. Lopes, G. Tréglia, C. Mottet, B. Legrand. Ordering and surface segregation in Co1−cPtc nanoparticles: A theoretical study from surface alloys to nanoalloys. Physical Review B : Condensed matter and materials physics, American Physical Society, 2015, 91, pp.035407. 〈hal-01130361〉
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David Georges Biron, Ludovic Bonhomme, Marianne Coulon, Oyvind Overli. Microbiomes, plausible players or not in alteration of host behavior. Frontiers in microbiology, Frontiers Research Foundation, 2015, 5, pp.25628614. 〈10.3389/fmicb.2014.00775〉. 〈hal-01112568〉
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Olga Savichtcheva, Didier Debroas, Marie Elodie Perga, Fabien Arnaud, Clement Villar, et al.. Effects of nutrients and warming on Planktothrix dynamics and diversity: a palaeolimnological view based on sedimentary DNA and RNA. Freshwater Biology, Wiley, 2015, 60 (1), pp.31-49. 〈10.1111/fwb.12465〉. 〈hal-01452304〉
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Jean-Pierre Morel, Nicolas Marmier, Charlotte Hurel, Nicole Morel-Desrosiers. Thermodynamics of selenium sorption on alumina and montmorillonite. Cogent Chemistry, Taylor & Francis Online, 2015, 1, pp.1070943. 〈hal-01203202〉
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Corinne Bardot, Pascale Besse-Hoggan, Louis Carles, Morgane Le Gall, Guilhem Clary, et al.. How the edaphic Bacillus megaterium strain Mes11 adapts its metabolism to the herbicide mesotrione pressure.. Environmental Pollution (1970), Elsevier Science, 2015, 199, pp.198-208. 〈10.1016/j.envpol.2015.01.029〉. 〈hal-01214055〉
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E Koji, C Lontsi Djimeli, A Tamsa Arfao, V Noah Ewoti, S TchakontÉ, et al.. Abundance Dynamic of Vibrio Cells Associated with Freshwater ShrimpsAtyidae (Crustacea-Decapoda) in the Coastal Surface Waters of Cameroon(Central Africa): Assessment of the Role of some Environmental Factors. Int.J.Curr.Microbiol.App.Sci, 2015, 4 (6), pp.358-378. 〈hal-01393948〉
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E Koji, A Tamsa Arfao, C Lontsi Djimeli, Ov Noah Ewoti, Me Nougang, et al.. Impact of Rainfall and Some Water Abiotic Factors on the Abundance Dynamic of Vibrio and Aeromonas Adhered to Copepods Surface in Some Coastal Streams and Rivers in Cameroon (Central Africa). International Journal of Research Studies in Biosciences, Academicians research center, 2015, 3 (9), pp.11-21. 〈hal-01393950〉
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J Signe Mbiada, C Lontsi Djimeli, A Manouore Njoya, Js Eheth, S Tchakonte, et al.. Assessment of the potential effect of some streams properties on the isolated Aeromonas hydrophila strains susceptibility against some β-Lactams and Sulfamids. Research in Biotechnology, 2015, 6, pp.33-44. 〈hal-01394003〉
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Pa Nana, Z Fokam, Geneviève Bricheux, K Moche, J Colombet, et al.. Viruses and bacteria microfauna of the soil and the digestive tract of earthworms (Oligochaetes annelids) of Cameroon: highlighting, quantification and importance. International Journal of Biosciences, 2015, 6 (1), pp.252-260. 〈hal-01393991〉
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Zéphyrin Fokam, Paul Alain Nana, Karine Moche, Geneviève Bricheux, Philippe Bouchard, et al.. Influence of soil physicochemical parameters on the abundance ofParacoelophrya polymorphus (Ciliophora: Radiophryidae) commensal ofearthworms (Annelida: Glossoscolecidae) collected in Bambui (NorthWestCameroon). Journal of Biodiversity and Environmental Sciences, 2015, 6 (2), pp.376-389. 〈10.1.1.682.4015〉. 〈hal-01393595〉
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Z Fokam, Pa Nana, P Ngassam, Geneviève Bricheux, P Bouchard, et al.. Morphological characterization of two new species of Dicontophrya (Ciliophora: Astomatia: Contophryidae) commensal of earthworms (Oligochaeta: Annelida) of Ebebda and Nkolbikogo (Cameroon). International Journal of Biosciences, 2015, 7, pp.49-57. 〈hal-01393598〉
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A. Foulquier, J. Artigas, S. Pesce, T. Datry. Drying responses of microbial litter decomposition and associated fungal and bacterial communities are not affected by emersion frequency. Freshwater Science, 2015, 34 (4), pp.1233 - 1244. 〈10.1086/682060〉. 〈hal-01393619〉
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S. Miquel, R. Martín, A. Lashermes, M. Gillet, M. Meleine, et al.. Anti-nociceptive effect of Faecalibacterium prausnitzii in non-inflammatory IBS-like models. Scientific Reports, Nature Publishing Group, 2015, 6, pp.19399. 〈10.1038/srep19399〉. 〈hal-01263911〉
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Claude Guerin, Frédérique Bayle, Véronique Leray, Sophie Debord, Alina Stoian, et al.. Open lung biopsy in nonresolving ARDS frequently identifies diffuse alveolar damage regardless of the severity stage and may have implications for patient management. Intensive Care Medicine, Springer Verlag, 2015, 41 (2), pp.222 - 230. 〈10.1007/s00134-014-3583-2〉. 〈hal-01393589〉
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Alexandre Lautrette, Maïté Garrouste-Orgeas, Bertrand Bertrand, Dany Goldgran-Toledano, Samir Jamali, et al.. Respective impact of no escalation of treatment, withholding and withdrawal of life-sustaining treatment on ICU patients’ prognosis: a multicenter study of the Outcomerea Research Group. Intensive Care Medicine, Springer Verlag, 2015, 41 (10), pp.1763 - 1772. 〈10.1007/s00134-015-3944-5〉. 〈hal-01393958〉
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Jean Reignier, Michael Darmon, Romain Sonneville, Anne-Laure Borel, Maité Garrouste-Orgeas, et al.. Impact of early nutrition and feeding route on outcomes of mechanically ventilated patients with shock: a post hoc marginal structural model study. Intensive Care Medicine, Springer Verlag, 2015, 41 (5), pp.875 - 886. 〈10.1007/s00134-015-3730-4〉. 〈hal-01393996〉
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Guillaume Villatte, Christophe Massard, Stéphane Descamps, Yves Sibaud, Christiane Forestier, et al.. Photoactive TiO2 antibacterial coating on surgical external fixation pins for clinical application. International Journal of Nanomedicine, Dove Medical Press, 2015, 〈10.2147/IJN.S81518〉. 〈hal-01829424〉
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Guillaume Villatte, Christophe Massard, Stéphane Descamps, Yves Sibaud, Christiane Forestier, et al.. Photoactive TiO2 antibacterial coating on surgical external fixation pins for clinical application. International Journal of Nanomedicine, Dove Medical Press, 2015, 〈10.2147/IJN.S81518〉. 〈hal-01394025〉
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J. Signe Mbiada, C. Lontsi Djimeli, A. Manouore Njoya, J. S. Eheth, S. Tchakonté, et al.. Assessment of the potential effect of some streams properties on the isolated Aeromonas hydrophila strains susceptibility against some β-Lactams and Sulfamids. Research in Biotechnology, 2015, 6 (5), pp.33-44. 〈http://resplantbiol.com/index.php/rib/article/view/458〉. 〈hal-01392607〉
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E. Koji, A. Tamsa Arfao, C. Lontsi Djimeli, O.V. Noah Ewoti, M.E. Nougang, et al.. Impact of Rainfall and Some Water Abiotic Factors on theAbundance Dynamic of Vibrio and Aeromonas Adhered toCopepods Surface in Some Coastal Streams and Rivers inCameroon (Central Africa). International Journal of Research Studies in Biosciences, Academicians research center, 2015, 3 (9), pp.11-21. 〈https://www.arcjournals.org/international-journal-of-research-studies-in-bio-sciences〉. 〈10.20431〉. 〈hal-01392567〉
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Mylène Hugoni, Isabelle Domaizon, Najwa Taib, Corinne Biderre-Petit, Hélène Agogué, et al.. Temporal dynamics of active Archaea in oxygen-depleted zones of two deep lakes. Environmental Microbiology Reports, Wiley, 2015, 7, pp.321-329. 〈10.1111/1758-2229.12251〉. 〈hal-01354841〉
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Pierre Joly, Frédérique Bonnemoy, Pascale Besse-Hoggan, Fanny Perrière, Olivier Crouzet, et al.. Responses of Limagne "Clay/Organic matter-rich" soil microbial communities to realistic formulated herbicide mixtures, including S-metolachlor, mesotrione and nicosulfuron. Water, Air, and Soil Pollution, Springer Verlag, 2015, 226, 413, 15 p. 〈10.1007/s11270-015-2683-0〉. 〈hal-01235966〉
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P. Rodon, C. Hulin, B. Pegourie, M. Tiab, B. Anglaret, et al.. Phase II study of bendamustine, bortezomib and dexamethasone as second-line treatment for elderly patients with multiple myeloma: the Intergroupe Francophone du Myelome 2009-01 trial. Haematologica, Ferrata Storti Foundation, 2015, 100 (2), pp.e56-9. 〈10.3324/haematol.2014.110890〉. 〈hal-01116536〉
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Z Fokam, Pa Nana, P Ngassam, Geneviève Bricheux, B Vigues, et al.. Soil physicochemical parameters affecting abundance and distribution of Dicoelophrya nkoldaensis (ciliophora : radiophryidae) living in the gut of earthworms (Annelida : glossoscolecidae) collected in Bambui (nord-west Cameroon). International Journal of Current Research, T. Manikandan, 2015, 7 (6), pp.17164-17173. 〈hal-01393611〉
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Lila Bouadma, Romain Sonneville, Maité Garrouste-Orgeas, Michael Darmon, Bertrand Souweine, et al.. Ventilator-Associated Events: Prevalence, Outcome, and Relationship With Ventilator-Associated Pneumonia.. Critical Care Medicine, Lippincott, Williams & Wilkins, 2015, 43 (9), pp.1798 - 1806. 〈10.1097/CCM.0000000000001091〉. 〈hal-01393584〉
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Cédric Bretonnière, Marc Leone, Christophe Milési, Bernard Allaouchiche, Laurence Armand-Lefevre, et al.. Strategies to reduce curative antibiotic therapy in intensive care units (adult and paediatric). Intensive Care Medicine, 2015, 41 (7), pp.1181--1196. 〈10.1007/s00134-015-3853-7〉. 〈hal-01195735〉
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Sophie Perinel, François Vincent, Alexandre Lautrette, Jean Dellamonica, Christophe Mariat, et al.. Transient and Persistent Acute Kidney Injury and the Risk of Hospital Mortality in Critically Ill Patients. Critical Care Medicine, Lippincott, Williams & Wilkins, 2015, 43 (8), pp.e269 - e275. 〈10.1097/CCM.0000000000001077〉. 〈hal-01393995〉
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Mylène Hugoni, Hélène Agogué, Najwa Taib, Isabelle Domaizon, Anne Moné, et al.. Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea. Aquatic Microbial Ecology, Inter Research, 2015, 70 (2), pp.473-483. 〈10.1007/s00248-015-0601-z〉. 〈hal-01354835〉
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Frank H. Gleason, Thomas G. Jephcott, Frithjof C. Kuepper, Mélanie Gerphagnon, Télesphore Sime-Ngando, et al.. Potential roles for recently discovered chytrid parasites in the dynamics of harmful algal blooms. Fungal Biology Reviews, Elsevier, 2015, 29 (1), pp.20-33. 〈10.1016/j.fbr.2015.03.002〉. 〈hal-01253981〉
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Raiko Blondonnet, Jugurtha Aliane, Thomas Godet, Bertrand Souweine, Jean-Michel Constantin. High-frequency percussive ventilation as a rescue therapy for ARDS patients under ECMO: About a case. Anaesthesia Critical Care & Pain Medicine, Elsevier Masson, 2015, 34 (2), pp.105 - 107. 〈10.1016/j.accpm.2015.02.003〉. 〈hal-01393580〉
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Aurore Dubuffet, Caroline Zanchi, Gwendoline Boutet, Jérôme Moreau, Maria Teixeira, et al.. Trans-generational Immune Priming Protects the Eggs Only against Gram-Positive Bacteria in the Mealworm Beetle. PLoS Pathogens, Public Library of Science, 2015, 11 (10), pp.e1005178. 〈10.1371/journal.ppat.1005178〉. 〈hal-01588049〉
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Bertrand Souweine, Alexandre Lautrette, Didier Gruson, Emmanuel Canet, Kada Klouche, et al.. Ethanol Lock and Risk of Hemodialysis Catheter Infection in Critically Ill Patients. A Randomized Controlled Trial. American Journal of Respiratory and Critical Care Medicine, American Thoracic Society, 2015, 191 (9), pp.1024 - 1032. 〈10.1164/rccm.201408-1431OC〉. 〈hal-01394021〉
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Simon Roux, Francois Enault, Bonnie L Hurwitz, Matthew B Sullivan. VirSorter: mining viral signal from microbial genomic data.. PeerJ, PeerJ, 2015, 3, pp.e985. 〈hal-01557667〉
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Marion Sabart, Kristell Crenna, Fanny Perrière, Angélique Abila, Martin Leremboure, et al.. Co-occurrence of microcystin and anatoxin-a in the freshwater lake Aydat (France): analytical and molecular approaches during a three-year survey.. Harmful Algae, Elsevier, 2015, 48, pp.12-20. 〈10.1016/j.hal.2015.06.007〉. 〈hal-01206079〉
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C. Gasc, C. Ribière, N. Parisot, R. Beugnot, C. Defois, et al.. Capturing prokaryotic dark matter genomes. Research in Microbiology, Elsevier, 2015, 166 (10), pp.814-830. 〈10.1016/j.resmic.2015.06.001〉. 〈hal-01449140〉
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Conference papers

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Clarisse Mallet, Pierre Joly, Frédérique Bonnemoy, Pascale Besse-Hoggan, Fanny Perrière, et al.. Devenir et impacts d'un « cocktail » d'herbicides sur des groupes fonctionnels microbiens : élaboration de bioindicateurs de perturbations. DevImCocMic. Séminaire EC2CO de restitution des projets et de prospective ECODYN, Sep 2015, Paris, France. 2015. 〈hal-01606490〉
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Olivier Crouzet, Sylvie Nelieu, Christelle Marrauld, Ghislaine Delarue, Frédéric Rimet, et al.. Les communautés micro-algales et cyanobactériennes comme bioindicateurs de stress phytosanitaires dans les sols agricoles. 45e Congrès du Groupe Français des Pesticides Devenir et impact des pesticides : verrous à lever et nouveaux enjeux, May 2015, Versailles, France. 2016. 〈hal-01603887〉
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Marion Sabart, B. Legrand, Yannick Miras, Marlène Lavrieux, Delphine Latour. Recurrence of cyanobacterial blooms since 6 thousand years in the French Lake Aydat. Aquatic Sciences: global and regional perspectives. Aquatic Sciences: global and regional perspectives. North Meets South, Feb 2015, Granada, Spain. 〈hal-01112284〉
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Books

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Christian Amblard, Pascal Carrère, Philippe Cochet, Boris Fumanal, Stéphane Herbette, et al.. La biodiversité en Auvergne : Etat de conservation des espèces. Alliance Universitaire d'Auvergne, Société des amis des Universités, 615-616, 466 p., 2015, Revue d'Auvergne. 〈hal-01594913〉
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Poster communications

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Miguel Vilas Boas, Maria Alice Pinto, Catia Neves, Lionel Garnery, Hélène Legout, et al.. Honeybee Conservation centers in Western Europe: an innovative strategy using sustainable beekeeping to reduce honeybee decline. 44. Apimondia congress, Sep 2015, Daejon, South Korea. 2015. 〈hal-01216261〉
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F. Carvalho, A. Lashermes, S. Miquel, Rebeca Martin Rosique, A. Gelor, et al.. Impact of intestinal dysbiosis on mouse models of colonic hypersensitivity. NeuroGASTRO 2015, Jun 2015, Istanbul, Turkey. John Wiley and Sons, 27 (Suppl. S2), 2015, Neurogastroenterology and Motility. 〈hal-01535295〉
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Olivier Crouzet, Sylvie Nelieu, Christelle Marrauld, Ghislaine Delarue, Frédéric Rimet, et al.. Les communautés microbiennes photosynthétiques (cyanobactéries et micro-algues) comme bioindicateurs de stress phytosanitaires dans les sols agricoles. 45e congrès du Groupe Français des Pesticides, May 2015, Versailles, France. 2015. 〈hal-01536430〉
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Theses

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Johan Panek. Etude des interactions hôte-parasite dans le cadre d'infections par des microsporidies, un groupe de champignons parasites intracellulaires obligatoires. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2015. Français. 〈NNT : 2015CLF22618〉. 〈tel-01295048〉
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2014

Journal articles

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Noémie Pascault, Simon Roux, Joan Artigas, Stéphane Pesce, Julie Leloup, et al.. A high-throughput sequencing ecotoxicology study of freshwater bacterial communities and their responses to tebuconazole. FEMS Microbiology Ecology, Wiley-Blackwell, 2014, 90 (3), pp.25135322. 〈10.1111/1574-6941.12416〉. 〈hal-01110178〉
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Céline Nourrisson, Julien Scanzi, Bruno Pereira, Christina Nkoudmongo, Ivan Wawrzyniak, et al.. Blastocystis Is Associated with Decrease of Fecal Microbiota Protective Bacteria: Comparative Analysis between Patients with Irritable Bowel Syndrome and Control Subjects. PLoS ONE, Public Library of Science, 2014, 9 (11), pp.25365580. 〈10.1371/journal.pone.0111868〉. 〈hal-01111985〉
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Pierre Joly, Benjamin Misson, Fanny Perrière, Frédérique Bonnemoy, Muriel Joly, et al.. Soil surface colonization by phototrophic indigenous organisms, in two contrasted soils treated by formulated maize herbicide mixtures. Ecotoxicology, Springer Verlag, 2014, 23 (9), pp.1648 - 1658. 〈10.1007/s10646-014-1304-9〉. 〈hal-01826038〉
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Karine Frénal, Jean-Baptiste Marq, Damien Jacot, Valérie Polonais, Dominique Soldati-Favre, et al.. Plasticity between MyoC- and MyoA-Glideosomes: An Example of Functional Compensation in Toxoplasma gondii Invasion. PLoS Pathogens, Public Library of Science, 2014, 10 (11), pp.25393004. 〈10.1371/journal.ppat.1004504〉. 〈hal-01112526〉
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Karine Moche, Champlain Djieto Lordon, Marie Noel Melie Feyem, Zéphirin Tadu, Paul Alain Nana, et al.. AGRO-MORPHOLOGICAL CHARACTERIZATION OF TWO RICE VARIETIES FROM JAPAN; ORYSA SATIVA L. AND FOUR NERICAS VARIETIES IN AN AGRO-ECOLOGICAL ZONE OF THE TOWN OF YAOUNDE (CAMEROON); COMPARATIVE STUDY OF THEIR PERFORMANCES. International Journal of Current Research, T. Manikandan, 2014, 6 (11), pp.9941-9946. 〈hal-01091004〉
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Marion Roussel, Dominique Pontier, Mirdad Kazanji, Barthélémy Ngoubangoye, Renaud Mahieux, et al.. Quantifying transmission by stage of infection in the field: The example of SIV-1 and STLV-1 infecting mandrills.. American Journal of Primatology, Wiley, 2014, pp.0. 〈hal-01075462〉
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Guillaume Moulis, Haleh Bagheri, Laurent Sailler, Annie-Pierre Jonville-Bera, Emmanuelle Weber, et al.. Are adverse drug reaction patterns different between romiplostim and eltrombopag? 2009-2013 French PharmacoVigilance assessment.. European Journal of Internal Medicine, Elsevier, 2014, 25 (8), pp.777-80. 〈10.1016/j.ejim.2014.09.006〉. 〈hal-01078985〉
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Noémie Pascault, Valentin Loux, Sandra Derozier, Véronique Martin, Didier Debroas, et al.. Technical challenges in metatranscriptomic studies applied to the bacterial communities of freshwater ecosystems. Genetica, Springer Verlag, 2014, pp.25216965. 〈10.1007/s10709-014-9783-4〉. 〈hal-01110172〉
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Cyril Vidau, Johan Panek, Catherine Texier, David Georges Biron, Luc P Belzunces, et al.. Differential proteomic analysis of midguts from Nosema ceranae-infected honeybees reveals manipulation of key host functions.. Journal of Invertebrate Pathology, Elsevier, 2014, 121, pp.89-96. 〈10.1016/j.jip.2014.07.002〉. 〈hal-01071049〉
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Hélène Agogué, Clarisse Mallet, Francis Orvain, Margot De Crignis, Françoise Mornet, et al.. Bacterial dynamics in a microphytobenthic biofilm: A tidal mesocosm approach. Journal of Sea Research, Elsevier, 2014, Trophic significance of microbial biofilm in tidal flats, 92, pp.36 - 45. 〈10.1016/j.seares.2014.03.003〉. 〈hal-01086656〉
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Blanche Saint-Béat, Dupuy Christine, Hélène Agogué, Alexandre Carpentier, Julien Chalumeau, et al.. How does the resuspension of the biofilm alter the functioning of the benthos–pelagos coupled food web of a bare mudflat in Marennes-Oléron Bay (NE Atlantic)?. Journal of Sea Research, Elsevier, 2014, 92, pp.144-157. 〈http://www.sciencedirect.com/science/article/pii/S138511011400029X〉. 〈10.1016/j.seares.2014.02.003〉. 〈hal-01097877〉
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Dupuy Christine, Clarisse Mallet, Katell Guizien, Hélène Montanié, Martine Bréret, et al.. Sequential resuspension of biofilm components (viruses, prokaryotes and protists) as measured by erodimetry experiments in the Brouage mudflat (French Atlantic coast). Journal of Sea Research, Elsevier, 2014, 92, pp.56-65. 〈10.1016/j.seares.2013.12.002〉. 〈hal-01104286〉
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E Peyretaillade, D Boucher, N Parisot, C Gasc, R Butler, et al.. Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems. Heredity, Nature Publishing Group, 2014, pp.25182222. 〈10.1038/hdy.2014.78〉. 〈hal-01110134〉
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Amparo Hidalgo-Galiana, Marta Monge, David Georges Biron, Francesc Canals, Ignacio Ribera, et al.. Reproducibility and Consistency of Proteomic Experiments on Natural Populations of a Non-Model Aquatic Insect. PLoS ONE, Public Library of Science, 2014, 9 (8), pp.25133588. 〈10.1371/journal.pone.0104734〉. 〈hal-01112552〉
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J. Sciauvaud, E. Rigal, J. Pascal, C. Nourrisson, P. Poirier, et al.. Transmission of infectious diseases from internationally adopted children to their adoptive families. Clinical Microbiology and Infection, Elsevier for the European Society of Clinical Microbiology and Infectious Diseases, 2014, 20 (8), pp.24261464. 〈10.1111/1469-0691.12454〉. 〈hal-01112581〉
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M Kaiser, D Biron, F Libersat. Abstracts: The 22nd Annual Meeting of the Israel Society for Neuroscience (ISFN) & The 2nd Bi national Italy-Israel Neuroscience Meeting. Journal of Molecular Neuroscience, Humana Press, 2014, 53 (S1), pp.53: S66. 〈10.1007/s12031-014-0252-4〉. 〈hal-01115258〉
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Marion Sabart, Benjamin Misson, Marlène Jobard, Gisèle Bronner, Florence Donnadieu-Bernard, et al.. Genetic diversity along the life cycle of the cyanobacterium Microcystis: highlight on the complexity of benthic and planktonic interactions. Applied and Environmental Microbiology, American Society for Microbiology, 2014, pp.1462-2920. 〈10.1111/1462-2920.12555〉. 〈hal-01112462〉
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G. Girault, N. Parisot, E. Peyretaillade, P. Peyret, S. Derzelle. Draft Genomes of Three Strains Representative of the Bacillus anthracis Diversity Found in France. Genome Announcements, American Society for Microbiology, 2014, 2 (4), pp.25081258. 〈10.1128/genomeA.00736-14〉. 〈hal-01110149〉
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Rebecca D. Oppenheim, Darren J. Creek, James I. Macrae, Katarzyna K. Modrzynska, Paco Pino, et al.. BCKDH: The Missing Link in Apicomplexan Mitochondrial Metabolism Is Required for Full Virulence of Toxoplasma gondii and Plasmodium berghei. PLoS Pathogens, Public Library of Science, 2014, 10 (7), pp.25032958. 〈10.1371/journal.ppat.1004263〉. 〈hal-01112521〉
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C. Nourrisson, Séverine Mathieu, J. Beytout, M. Cambon, P. Poirier. Lésion ostéolytique chez une patiente splénectomisée : à propos d’un cas d’échinococcose alvéolaire vertébrale. La Revue De Médecine Interne, Elsevier, 2014, 35 (6), pp.23890484. 〈10.1016/j.revmed.2013.06.004〉. 〈hal-01112550〉
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Michael Darmon, Christophe Clec'H, Christophe Adrie, Laurent Argaud, Bernard Allaouchiche, et al.. Acute Respiratory Distress Syndrome and Risk of AKI among Critically Ill Patients.. Clinical Journal of the American Society of Nephrology, American Society of Nephrology, 2014, epub ahead of print. 〈10.2215/CJN.08300813〉. 〈hal-01053792〉
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Mélanie Piroux, Chantal Thorin, Isabelle Farrera, Monique L’hostis, Bernard Vigues, et al.. A COMPARISON BETWEEN PLANT COMMUNITY COMPOSITION AND BOTANICAL SPECIES GATHERED BY HONEY BEES IN A CULTIVATED LANDSCAPE OF WESTERN FRANCE. International Journal of Current Research, T. Manikandan, 2014, Vol. 6, Issue, 05, pp.6699-6709. 〈hal-01114656〉
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F. Jaziri, N. Parisot, A. Abid, J. Denonfoux, C. Ribiere, et al.. PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification. Database Searcher, Meckler Corp., 2014, 2014, pp.24771669. 〈10.1093/database/bau036〉. 〈hal-01110161〉
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Damien Roux, Jean Reignier, Guillaume Thiery, Alexandre Boyer, Jan Hayon, et al.. Acquiring procedural skills in ICUs: a prospective multicenter study*.. Critical Care Medicine, Lippincott, Williams & Wilkins, 2014, 42 (4), pp.886-95. 〈10.1097/CCM.0000000000000049〉. 〈hal-01053800〉
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P. Poirier, D. Meloni, C. Nourrisson, I. Wawrzyniak, E. Viscogliosi, et al.. Molecular subtyping of Blastocystis spp. using a new rDNA marker from the mitochondria-like organelle genome.. Parasitology, Cambridge University Press (CUP), 2014, 141 (5), pp.670-81. 〈10.1017/S0031182013001996〉. 〈hal-01071887〉
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Michael Darmon, Matthias Pichon, Carole Schwebel, Stéphane Ruckly, Christophe Adrie, et al.. Influence of Early Dysnatraemia Correction on Survival of Critically Ill Patients.. Shock, Lippincott, Williams & Wilkins, 2014, epub ahead of print. 〈10.1097/SHK.0000000000000135〉. 〈hal-01053793〉
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Wanessa C Lima, Damien Balestrino, Christiane Forestier, Pierre Cosson. Two distinct sensing pathways allow recognition of Klebsiella pneumoniae by Dictyostelium amoebae.. Cellular Microbiology, Wiley, 2014, 16 (3), pp.311-23. 〈10.1111/cmi.12226〉. 〈hal-01053798〉
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Jean-François Brugère, Guillaume Borrel, Nadia Gaci, William Tottey, Paul W O’toole, et al.. Archaebiotics Proposed therapeutic use of archaea to prevent trimethylaminuria and cardiovascular disease. Gut microbes, Taylor & Francis, 2014, 5 (1), pp.5 - 10. 〈10.4161/gmic.26749〉. 〈hal-01612755〉
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Joan Artigas, N. Pascault, A. Bouchez, J. Chastaine, D. Debroas, et al.. Comparative sensitivity to the fungicide tebuconazole of biofilm and plankton microbial communities in freshwater ecosystems. Science of the Total Environment, Elsevier, 2014, 468-469, pp.326-336. 〈10.1016/j.scitotenv.2013.08.074〉. 〈hal-00995683v2〉
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Faouzi Jaziri, Eric Peyretaillade, Mohieddine Missaoui, Nicolas Parisot, Sébastien Cipière, et al.. Large Scale Explorative Oligonucleotide Probe Selection for Thousands of Genetic Groups on a Computing Grid: Application to Phylogenetic Probe Design Using a Curated Small Subunit Ribosomal RNA Gene Database. The Scientific World Journal, Hindawi Publishing Corporation, 2014, 2014, pp.350487. 〈10.1155/2014/350487〉. 〈hal-01110169v2〉
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Mélanie Piroux, Olivier Lambert, Sophie Puyo, Isabelle Farrera, Chantal Thorin, et al.. Correlating the pollens gathered by Apis mellifera with the landscape features in western France. Applied Ecology and Environmental Research, ALOKI Ltd, 2014, 12 (2), pp.423-439. 〈hal-01506347〉
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Marina dos Santos Goncalves, Cédric Delattre, Damien Balestrino, Nicolas Charbonnel, Redouan Elboutachfaiti, et al.. Anti-biofilm activity: a function of Klebsiella pneumoniae capsular polysaccharide.. PLoS ONE, Public Library of Science, 2014, 9 (6), pp.e99995. 〈10.1371/journal.pone.0099995〉. 〈hal-01053796〉
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Johan Panek, Hicham El Alaoui, Anne Mone, Serge Urbach, Edith Demettre, et al.. Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae.. PLoS ONE, Public Library of Science, 2014, 9 (6), pp.e100791. 〈10.1371/journal.pone.0100791〉. 〈hal-01053924〉
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Julie Aufauvre, Barbara Misme-Aucouturier, Bernard Viguès, Catherine Texier, Frédéric Delbac, et al.. Transcriptome analyses of the honeybee response to Nosema ceranae and insecticides.. PLoS ONE, Public Library of Science, 2014, 9 (3), pp.e91686. 〈10.1371/journal.pone.0091686〉. 〈hal-01071042〉
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Zéphyrin Fokam, Paul Alain Nana, Pierre Ngassam, Geneviève Bricheux, Philippe Bouchard, et al.. Morphological description of four new species of Nyctotherus (Ciliophora: Nyctotheridae: Heterotri- chida), commensal ciliates of the digestive tract of a terrestrial Oligochaete (Megascolecidae) from the northwest region of Cameroon. Protistology, 2014, 8 (2), pp.62-70. 〈hal-01070952〉
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Nicolas Parisot, Adrian Pelin, Cyrielle Gasc, Valérie Polonais, Abdel Belkorchia, et al.. Microsporidian Genomes Harbor a Diverse Array of Transposable Elements that Demonstrate an Ancestry of Horizontal Exchange with Metazoans.. Genome Biol Evol, Oxford University Press, 2014, 6 (9), pp.2289-300. 〈10.1093/gbe/evu178〉. 〈hal-01071789〉
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Guillaume Borrel, Nadia Gaci, Pierre Peyret, Paul W. O'Toole, Simonetta Gribaldo, et al.. Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette. Archaea, Hindawi Publishing Corporation, 2014, 2014, pp.1 - 11. 〈10.1155/2014/374146〉. 〈hal-01612761〉
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Faouzi Jaziri, Nicolas Parisot, Anis Abid, Jérémie Denonfoux, C. Ribière, et al.. PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification. Database - The journal of Biological Databases and Curation, Oxford University Press, 2014, 2014, pp.bau036. 〈10.1093/database/bau036〉. 〈hal-01612766〉
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Kévin Tocquard, Clément Lafon-Placette, Daniel Auguin, Beatriz Muries Bosch, Gisèle Bronner, et al.. In silico study of wall-associated kinase family reveals large-scale genomic expansion potentially connected with functional diversification in Populus. Tree Genetics and Genomes, Springer Verlag, 2014, 10 (5), pp.1135-1147. 〈10.1007/s11295-014-0748-7〉. 〈hal-01114446v2〉
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Simon Roux, Jeremy Tournayre, Antoine Mahul, Didier Debroas, François Enault. Metavir 2: new tools for viral metagenome comparison and assembled virome analysis.. BMC Bioinformatics, BioMed Central, 2014, 15, pp.76. 〈10.1186/1471-2105-15-76〉. 〈hal-01017832〉
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Guillaume Borrel, Nicolas Parisot, Hugh Harris, Eric Peyretaillade, Nadia Gaci, et al.. Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.. BMC Genomics, BioMed Central, 2014, 15 (1), pp.679. 〈10.1186/1471-2164-15-679〉. 〈pasteur-01059404〉
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Dima El Safadi, Lobna Gaayeb, Dionigia Meloni, Amandine Cian, Philippe Poirier, et al.. Children of Senegal River Basin show the highest prevalence of Blastocystis sp. ever observed worldwide.. BMC Infectious Diseases, BioMed Central, 2014, 14 (1), pp.164. 〈10.1186/1471-2334-14-164〉. 〈inserm-00981310〉
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Paul Alain Nana, Zéphyrin Fokam, Pierre Ngassam, Gideon Aghaindum Ajeagah, Karine Moche, et al.. INFLUENCE OF IONIC CONTENTS ON THE STRATIFICATION OF ASTOMATIA AND HYSTEROCINETIDAE (CILIOPHORA, OLIGOHYMENOPHORA) ALONG THE DIGESTIVE TRACT OF ALMA EMINI (OLIGOCHAETE, GLOSSOSCOLECIDAE) FROM THE CENTER REGION OF CAMEROON. International Journal of Current Research, T. Manikandan, 2014, 6 (1), pp.4468-4474. 〈hal-01114626v2〉
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Clarisse Mallet, Hélène Agogué, Frédérique Bonnemoy, Katell Guizien, Francis Orvain, et al.. Structures of benthic prokaryotic communities and their hydrolytic enzyme activities resuspended from samples of intertidal mudflats: An experimental approach. Journal of Sea Research, Elsevier, 2014, Trophic significance of microbial biofilm in tidal flats, 92, pp.158-169. 〈10.1016/j.seares.2014.01.005〉. 〈hal-01356084〉
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Francis Orvain, Margot De Crignis, Katell Guizien, Sébastien Lefebvre, Clarisse Mallet, et al.. Tidal and seasonal effects on the short-term temporal patterns of bacteria, microphytobenthos and exopolymers in natural intertidal biofilms (Brouage, France). Journal of Sea Research, Elsevier, 2014, 〈10.1016/j.seares.2014.02.018〉. 〈hal-01425772〉
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F. Rodrigues, G. Ferru, L. Berthon, N. Boubals, P. Guilbaud, et al.. New insights into the extraction of uranium(VI) by an N,N-dialkylamide. Molecular Physics, Taylor & Francis, 2014, 112, pp.1362-1374. 〈10.1080/00268976.2014.902139〉. 〈hal-01010443〉
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Hélène Masclaux, Gilles Bourdier, Pascal Riera, Martin J. Kainz, Lionel Jouve, et al.. Resource partitioning among cladocerans in a littoral macrophyte zone: implications for the transfer of essential compounds. Aquatic Sciences - Research Across Boundaries, Springer Verlag, 2014, 76 (1), pp.73-81. 〈10.1007/s00027-013-0314-7〉. 〈hal-01255945〉
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Conference papers

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Léo Chassiot, Emmanuel Chapron, Aude Beauger, Yannick Miras, Patrick Albéric, et al.. Impact of Environmental changes of lacustrine dynamics in the Lake Pavin over the 7,000 years (French Massif Central). 5th International MAAR Conference, Nov 2014, Queretaro, Mexico. 〈hal-01112194〉
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Yannick Miras, Aude Beauger, Marlène Lavrieux, Karen K. Serieyssol, Valérie Andrieu-Ponel, et al.. Tracking long-term human impacts on landscape, vegetal biodiversity and water quality in the Lake Aydat catchment (Auvergne, France) using pollen, NPP and diatom assemblages.. QuickLakeH2014, an international workshop on Lakes and Human interactions, Sep 2014, Ankara, Turkey. 〈hal-01112215〉
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Léo Chassiot, Emmanuel Chapron, Aude Beauger, Yannick Miras, Patrick Albéric, et al.. Lake Pavin paleolimnology and sedimentary records of regional Natural Hazards over the last 7000 years (French Massif Central). International Congress of Sedimentology, Aug 2014, Genève, Switzerland. 〈hal-01109426〉
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Book sections

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Lm Weiss, Frédéric Delbac, Jr Hayman, G Pan, Z Zhou. .The Microsporidian Polar Tube and Spore Wall in “Microsporidia: Pathogens of Opportunity. .Microsporidia: Pathogens of Opportunity, 2014. 〈hal-01114436〉
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Poster communications

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Marie-Paule Lofe, Marc Saudreau, Samuel Guyot, David Georges Biron. Effet de l'infection par la microsporidie Nosema Ceranae sur la régulation de la température par l'abeille domestique. 2ème Journées de la recherche apicole, Feb 2014, Paris, France. ITSAP, pp.19, 2014. 〈hal-01268585〉
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Theses

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Mélanie Piroux. Ressources pollinifères et mellifères de l'Abeille domestique, Apis Mellifera, en paysage rural du nord-ouest de la France. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2014. Français. 〈NNT : 2014CLF22501〉. 〈tel-01135137〉
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Nicolas Parisot. Détermination de sondes oligonucléotidiques pour l'exploration à haut débit de la diversité taxonomique et fonctionnelle d'environnements complexes. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2014. Français. 〈NNT : 2014CLF22498〉. 〈tel-01086970〉
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Faouzi Jaziri. Conception et analyse des biopuces à ADN en environnements parallèles et distribués. Autre [cs.OH]. Université Blaise Pascal - Clermont-Ferrand II, 2014. Français. 〈NNT : 2014CLF22465〉. 〈tel-01276669〉
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Pierre Joly. Maize herbicides mixtures effects on soil microbial communities : microcosms studies. Agricultural sciences. Université Blaise Pascal - Clermont-Ferrand II, 2014. English. 〈NNT : 2014CLF22440〉. 〈tel-01020037〉
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2013

Journal articles

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Jean-Luc Faillie, Samy Babai, Sabrina Crépin, Virginie Bres, Marie-Laure Laroche, et al.. Pancreatitis associated with the use of GLP-1 analogs and DPP-4 inhibitors: a case/non-case study from the French Pharmacovigilance Database.. Acta Diabetologica, Springer Verlag, 2013, epub ahead of print. 〈10.1007/s00592-013-0544-0〉. 〈hal-00922480〉
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Dupuy Christine, Clarisse Mallet, Katell Guizien, Hélène Montanié, Martine Bréret, et al.. Sequential resuspension of biofilm components (viruses, prokaryotes and protists) as measured by erodimetry experiments in the Brouage mudflat (French Atlantic coast) . Journal of Sea Research, Elsevier, 2013, 〈10.1016/j.seares.2013.12.002〉. 〈hal-01214993〉
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P. Poirier, C. Nourrisson, L. Gibold, E. Chalus, D. Guelon, et al.. Three cases of cutaneous mucormycosis with Lichtheimia spp. (ex Absidia/Mycocladus) in ICU. Possible cross-transmission in an intensive care unit between 2 cases. Journal de Mycologie Médicale / Journal of Medical Mycology, 2013, 23 (4), pp.24139734. 〈10.1016/j.mycmed.2013.09.002〉. 〈hal-01112590〉
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Geneviève Bricheux, Jean-Louis Bonnet, Jacques Bohatier, Jean-Pierre Morel, Nicole Morel-Desrosiers. Microcalorimetry: a powerful and original tool for tracking the toxicity of a xenobiotic on Tetrahymena pyriformis.. Ecotoxicology and Environmental Safety, Elsevier, 2013, 98, pp.88-94. 〈10.1016/j.ecoenv.2013.09.019〉. 〈hal-01053791〉
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Guillaume Borrel, Paul O 'Toole, Hugh Harris, Pierre Peyret, Jean-François Brugere, et al.. Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2013, 5 (10), pp.1769 - 1780. 〈10.1093/gbe/evt128〉. 〈hal-01612746〉
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Ivan Wawrzyniak, Philippe Poirier, Eric Viscogliosi, Meloni Dionigia, Catherine Texier, et al.. Blastocystis, an unrecognized parasite: an overview of pathogenesis and diagnosis.. Ther Adv Infect Dis, 2013, 1 (5), pp.167-78. 〈10.1177/2049936113504754〉. 〈hal-01071806〉
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Aurore Villay, Céline Laroche, Diane Roriz, Hicham El Alaoui, Frédéric Delbac, et al.. Optimisation of culture parameters for exopolysaccharides production by the microalga Rhodella violacea.. Bioresource Technology, Elsevier, 2013, 146, pp.732-5. 〈10.1016/j.biortech.2013.07.030〉. 〈hal-01071051〉
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Yoann Millerioux, Charles Ebikeme, Marc Biran, Pauline Morand, Guillaume Bouyssou, et al.. The threonine degradation pathway of the Trypanosoma brucei procyclic form: the main carbon source for lipid biosynthesis is under metabolic control.. Molecular Microbiology, Wiley, 2013, 90(1), pp.114-29. 〈hal-01101378〉
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Piotr Medrzycki, Hervé Giffard, Pierrick Aupinel, Luc P Belzunces, Marie-Pierre Chauzat, et al.. Standard methods for toxicology research in Apis mellifera. Journal of Apicultural Research, 2013, 52 (4), pp.52(4): (2013). 〈10.3896/IBRA.1.52.4.14〉. 〈hal-01115275〉
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Mathieu Roudel, Julie Aufauvre, Bruno Corbara, Frédéric Delbac, Nicolas Blot. New insights on the genetic diversity of the honeybee parasite Nosema ceranae based on multilocus sequence analysis.. Parasitology, Cambridge University Press (CUP), 2013, 140 (11), pp.1346-56. 〈10.1017/S0031182013001133〉. 〈hal-01071812〉
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C. Forestier, T. Secheresse, D. Merlin, F. Ponsot, F. Ribollet, et al.. Un exemple d’intégration de la simulation dans un programme de développement professionnel continu (DPC) à l’échelle d’un service d’anesthésie. Annales Françaises d'Anesthésie et de Réanimation, Elsevier Masson, 2013, 32, pp.A153 - A154. 〈10.1016/j.annfar.2013.07.295〉. 〈halshs-01866459〉
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Valérie Polonais, Abdel Belkorchia, Michaël Roussel, Eric Peyretaillade, Pierre Peyret, et al.. Identification of two new polar tube proteins related to polar tube protein 2 in the microsporidian Antonospora locustae.. FEMS Microbiology Letters, Wiley-Blackwell, 2013, 346 (1), pp.36-44. 〈10.1111/1574-6968.12198〉. 〈hal-01071815〉
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Olivier Dézerald, Céline Leroy, Bruno Corbara, Jean-François Carrias, Laurent Pelozuelo, et al.. Food-web structure in relation to environmental gradients and predator-prey ratios in tank-bromeliad ecosystems. PLoS ONE, Public Library of Science, 2013, vol. 8, pp. 1-8. 〈10.1371/journal.pone.0071735〉. 〈hal-00913931〉
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Benjamin Misson, Marion Sabart, Aurélie Descroix, Emilie Duffaud, Bruno Combourieu, et al.. The importance of small colonies in sustaining Microcystis population exposed to mixing conditions: an exploration through colony size, genotypic composition and toxic potential. Environmental Microbiology Reports, Wiley, 2013, pp.n/a - n/a. 〈10.1111/1758-2229.12077〉. 〈hal-01826042〉
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Nicolas Olivier Rode, Julie Landes, Eva J P Lievens, Elodie Flaven, Adeline Segard, et al.. Cytological, molecular and life cycle characterization of Anostracospora rigaudi n. g., n. sp. and Enterocytospora artemiae n. g., n. sp., two new microsporidian parasites infecting gut tissues of the brine shrimp Artemia.. Parasitology, Cambridge University Press (CUP), 2013, 140 (9), pp.1168-85. 〈10.1017/S0031182013000668〉. 〈hal-01071897〉
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Céline Leroy, Jean-François Carrias, Bruno Corbara, Laurent Pélozuelo, Olivier Dézerald, et al.. Mutualistic ants contribute to tank-bromeliad nutrition.. Annals of Botany, Oxford University Press (OUP), 2013, epub ahead of print. 〈10.1093/aob/mct147〉. 〈hal-00849045〉
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Manuela Hartmann, Michael V. Zubkov, Dave J. Scanlan, Cécile Lepère. In situ interactions between photosynthetic picoeukaryotes and bacterioplankton in the Atlantic Ocean: evidence for mixotrophy. Environmental Microbiology Reports, Wiley, 2013, pp.doi:10.1111/1758-2229.12084. 〈hal-00848704〉
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Régis Fontbonne, Lionel Garnery, Cyril Vidau, Julie Aufauvre, Catherine Texier, et al.. Comparative susceptibility of three Western honeybee taxa to the microsporidian parasite Nosema ceranae.. Infection, Genetics and Evolution, Elsevier, 2013, 17, pp.188-94. 〈10.1016/j.meegid.2013.04.016〉. 〈hal-01071818〉
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Mélanie Gerphagnon, Delphine Latour, Jonathan Colombet, Télesphore Sime-Ngando. A Double Staining Method Using SYTOX Green and Calcofluor White for Studying Fungal Parasites of Phytoplankton.. Applied and Environmental Microbiology, American Society for Microbiology, 2013, 79 (13), pp.3943-51. 〈10.1128/AEM.00696-13〉. 〈hal-00846159〉
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A. Lautrette, M. Fejjal, A. Aithssain, T. N. Phan, N. Caillot, et al.. Comparison of three methods of diagnosis of plasma unmeasured anions in critically ill patients.. Minerva Anestesiologica, Edizione Minerva Medica, 2013, epub ahead of print. 〈hal-00834505〉
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Fabrice Thiolliere, Anne Françoise Serre-Sapin, Jean Reignier, Marcel Benedit, Jean Michel Constantin, et al.. Epidemiology and outcome of thrombocytopenic patients in the intensive care unit: results of a prospective multicenter study.. Intensive Care Med, 2013, epub ahead of print. 〈10.1007/s00134-013-2963-3〉. 〈hal-00834510〉
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Dima El Safadi, Dionigia Meloni, Philippe Poirier, Marwan Osman, Amandine Cian, et al.. Molecular epidemiology of Blastocystis in Lebanon and correlation between subtype 1 and gastrointestinal symptoms.. American Journal of Tropical Medicine and Hygiene, American Society of Tropical Medicine and Hygiene, 2013, 88 (6), pp.1203-6. 〈10.4269/ajtmh.12-0777〉. 〈hal-01071889〉
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Bushra Parveen, Viviane Ravet, Chakib Djediat, Isabelle Mary, Catherine Quiblier, et al.. Bacterial communities associated with Microcystis colonies differ from free-living communities living in the same ecosystem. Environmental Microbiology Reports, Wiley, 2013, pp.doi:10.1111/1758-2229.12071. 〈hal-00845941〉
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Djillali Annane, Jean-François Timsit, Bruno Megarbane, Claude Martin, Benoit Misset, et al.. Recombinant human activated protein C for adults with septic shock.. American Journal of Respiratory and Critical Care Medicine, American Thoracic Society, 2013, 187 (10), pp.1091-7. 〈10.1164/rccm.201211-2020OC〉. 〈hal-00837619〉
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Julien Thevenon, Abderrahmane Bourredjem, Laurence Faivre, Catherine Cardot-Bauters, Alain Calender, et al.. Higher risk of death among MEN1 patients with mutations in the JunD interacting domain: a Groupe d'etude des Tumeurs Endocrines (GTE) cohort study.. Human Molecular Genetics, Oxford University Press (OUP), 2013, 22 (10), pp.1940-8. 〈10.1093/hmg/ddt039〉. 〈hal-00935869〉
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Tiffanie Lescure, Alice Carpentier, Fabienne Battaglia-Brunet, Nicole Morel-Desrosiers. Oxidation of As(III) by the bacterial community of a marine sediment monitored by microcalorimetry. Geomicrobiology Journal, Taylor & Francis, 2013, 30, pp.540-548. 〈10.1080/01490451.2012.737088〉. 〈hal-00746918〉
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Benjamin Planquette, Jean-Francois Timsit, Benoit Misset, Carole Schwebel, Elie Azoulay, et al.. Pseudomonas Aeruginosa Ventilator-Associated Pneumonia: Predictive Factors of Treatment Failure.. American Journal of Respiratory and Critical Care Medicine, American Thoracic Society, 2013, epub ahead of print. 〈10.1164/rccm.201210-1897OC〉. 〈hal-00834514〉
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Amy R Kirkham, Cécile Lepère, Ludwig E Jardillier, Fabrice Not, Heather Bouman, et al.. A global perspective on marine photosynthetic picoeukaryote community structure.. ISME Journal, Nature Publishing Group, 2013, 7 (5), pp.922-36. 〈10.1038/ismej.2012.166〉. 〈hal-00848701〉
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Bertrand Pons, Alexandre Lautrette, Johanna Oziel, Jean Dellamonica, Régine Vermesch, et al.. Diagnostic accuracy of early urinary index changes in differentiating transient from persistent acute kidney injury in critically ill patients: multicenter cohort study.. Critical Care, BioMed Central, 2013, 17 (2), pp.R56. 〈10.1186/cc12582〉. 〈hal-00834516〉
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Geneviève Bricheux, Loïc Morin, Gwenaël Le Moal, Gérard Coffe, Damien Balestrino, et al.. Pyrosequencing assessment of prokaryotic and eukaryotic diversity in biofilm communities from a French river.. MicrobiologyOpen, Wiley, 2013, epub ahead of print. 〈10.1002/mbo3.80〉. 〈hal-00812657〉
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Najwa Taib, Jean-François Mangot, Isabelle Domaizon, Gisèle Bronner, Didier Debroas. Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity. PLoS ONE, Public Library of Science, 2013, 8 (3), pp.e58950. 〈hal-00840867〉
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Olivier Dézerald, Stanislas Talaga, Céline Leroy, Jean-François Carrias, Bruno Corbara, et al.. Environmental determinants of macroinvertebrate diversity in small water bodies: insights from tank-bromeliads. Hydrobiologia, Springer, 2013, pp.DOI 10.1007/s10750-013-1464-2. 〈hal-00845572〉
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Fifa Bothon, Eric Debiton, Felicien Avlessi, Christiane Forestier, Jean-Claude Teulade, et al.. In vitro biological effects of two anti-diabetic medicinal plants used in Benin as folk medicine.. BMC Complementary and Alternative Medicine, BioMed Central, 2013, 13 (1), pp.51. 〈10.1186/1472-6882-13-51〉. 〈inserm-00798331〉
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Cécile Lepère, Isabelle Domaizon, Najwa Taïb, Jean-François Mangot, Gisèle Bronner, et al.. Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems.. FEMS Microbiology Ecology, Wiley-Blackwell, 2013, epub ahead of print. 〈10.1111/1574-6941.12100〉. 〈hal-00806709〉
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Mylène Hugoni, Sandrine Etien, Antoine Bourges, Cécile Lepère, Isabelle Domaizon, et al.. Dynamics of ammonia-oxidizing Archaea and Bacteria in contrasted freshwater ecosystems.. Research in Microbiology, Elsevier, 2013, a compléter. 〈10.1016/j.resmic.2013.01.004〉. 〈hal-00813624〉
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Florent Valour, Hervé Dutronc, Aurélien Dinh, Céline Cazorla, Patricia Pavèse, et al.. Difficult-to-treat Gram-negative bone and joint infections: efficacy and safety of prolonged intravenous colistin.. International Journal of Antimicrobial Agents, Elsevier, 2013, 41 (2), pp.197-9. 〈10.1016/j.ijantimicag.2012.09.016〉. 〈hal-00821043〉
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Jérôme Franchel, Mohamed-Fouad Bouzidi, Gisèle Bronner, Felicity Vear, Paul Nicolas, et al.. Positional cloning of a candidate gene for resistance to the sunflower downy mildew, Plasmopara halstedii race 300.. TAG Theoretical and Applied Genetics, Springer Verlag, 2013, 126 (2), pp.359-67. 〈10.1007/s00122-012-1984-6〉. 〈hal-00822169〉
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Geneviève Bricheux, Gwenaël Le Moal, Claire Hennequin, Gérard Coffe, Florence Donnadieu, et al.. Characterization and evolution of natural aquatic biofilm communities exposed in vitro to herbicides.. Ecotoxicology and Environmental Safety, Elsevier, 2013, 88, pp.126-34. 〈10.1016/j.ecoenv.2012.11.003〉. 〈hal-00783594〉
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Lamjed Mansour, Oum Kalthoum Ben Hassine, Christian Vivarès, Emmanuel Cornillot. Spraguea lophii (Microsporidia) parasite of the teleost fish, Lophius piscatorius from Tunisian coasts: evidence for an extensive chromosome length polymorphism.. Parasitology International, Elsevier, 2013, 62 (1), pp.66-74. 〈10.1016/j.parint.2012.09.007〉. 〈hal-01071899〉
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Claire Aumeran, P. Guyot, M. Boisnoir, C. Robin-Hennequin, M. Vidal, et al.. Activity of ethanol and daptomycin lock on biofilm generated by an in vitro dynamic model using real subcutaneous injection ports.. European Journal of Clinical Microbiology and Infectious Diseases, Springer Verlag, 2013, 32 (2), pp.199-206. 〈10.1007/s10096-012-1732-5〉. 〈hal-00815229〉
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Jérémie Denonfoux, Nicolas Parisot, Eric Dugat-Bony, Corinne Petit, Delphine Boucher, et al.. Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration. DNA Research, Oxford University Press (OUP), 2013, pp. 1-12. 〈10.1093/dnares/dst001〉. 〈hal-00783545〉
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David Georges Biron, Hugh D Loxdale. Host-parasite molecular cross-talk during the manipulative process of a host by its parasite.. Journal of Experimental Biology, Cambridge University Press, 2013, 216 (Pt 1), pp.148-60. 〈10.1242/jeb.073825〉. 〈hal-00834511〉
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Bushra Parveen, Isabelle Mary, Agnès Vellet, Viviane Ravet, Didier Debroas. Temporal dynamics and phylogenetic diversity of free-living and particle-associated Verrucomicrobia communities in relation to environmental variables in a mesotrophic lake.. FEMS Microbiology Ecology, Wiley-Blackwell, 2013, 83 (1), pp.189-201. 〈10.1111/j.1574-6941.2012.01469.x〉. 〈hal-00821799〉
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C. Philipponnet, C. Guérin, E. Canet, R. Robert, C. Mariat, et al.. Kidney biopsy in the critically ill patient, results of a multicentre retrospective case series.. Minerva Anestesiologica, Edizione Minerva Medica, 2013, 79 (1), pp.53-61. 〈hal-00830518〉
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Olivier Crouzet, Jarosław Wiszniowski, Florence Donnadieu, Frédérique Bonnemoy, Jacques Bohatier, et al.. Dose-dependent effects of the herbicide mesotrione on soil cyanobacterial communities.. Archives of Environmental Contamination and Toxicology, Springer Verlag, 2013, 64 (1), pp.23-31. 〈10.1007/s00244-012-9809-9〉. 〈hal-00815290〉
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Emeline Valton, Christian Amblard, Ivan Wawrzyniak, Frederique Penault-Llorca, Mahchid Bamdad. P-gp expression in brown trout erythrocytes: evidence of a detoxification mechanism in fish erythrocytes.. Sci Rep, 2013, 3, pp.3422. 〈10.1038/srep03422〉. 〈hal-01071814〉
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Stéphan Jacquet, Xu Zhong, Parvathi Ammini, Angia Sriram Pradeep Ram. First description of a cyanophage infecting the cyanobacterium Arthrospira platensis (Spirulina). Journal of Applied Phycology, Springer Verlag, 2013, 25, pp.195-203. 〈hal-00813900〉
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Zéphyrin Fokam, Paul Alain Nana, Pierre Ngassam, Geneviève Bricheux, Philippe Bouchard, et al.. Description of two new species of Sicuophoridae and Nyctotheridae (Heterotrichina), endocommensal in the rectal ampulla of Bufo regularis (Amphibia: Anura) from the Northwest of Cameroon. Protistology, 2013, 8 (1), pp.16 - 21. 〈hal-01114647v2〉
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Marc Saudreau, Sylvain Pincebourde, Mathieu Dassot, A. Adam, Hugh D Loxdale, et al.. On the canopy structure manipulation to buffer climate change effects on insect herbivore development. Trees - Structure and Function, Springer Verlag, 2013, 27, pp.239-248. 〈10.1007/s00468-012-0791-7〉. 〈hal-00866158〉
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Simon Roux, Mart Krupovic, Didier Debroas, Patrick Forterre, François Enault. Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences.. Biology Open, Royal Society, 2013, 3 (12), pp.130160. 〈10.1098/rsob.130160〉. 〈hal-00932219〉
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Anne Aubusson Fleury, Geneviève Bricheux, Raghida Damaj, Michel Lemullois, Gérard Coffe, et al.. Epiplasmins and Epiplasm in Paramecium: The Building of a Submembraneous Cytoskeleton. Protist, Elsevier, 2013, 164 (4), pp.451-469. 〈10.1016/j.protis.2013.04.003〉. 〈hal-01071900v2〉
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Frédéric Plewniak, Sandrine Koechler, Benjamin Navet, Eric Dugat-Bony, Olivier Bouchez, et al.. Metagenomic insights into microbial metabolism affecting arsenic dispersion in Mediterranean marine sediments. Molecular Ecology, Wiley, 2013, 22 (19), pp.4870-4883. 〈10.1111/mec.12432〉. 〈hal-01026453〉
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Mylène Hugoni, Najwa Taib, Didier Debroas, Isabelle Domaizon, Isabelle Jouan-Dufournel, et al.. Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2013, 110 (15), pp.6004-6009. 〈10.1073/pnas.1216863110〉. 〈hal-01354640〉
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A. Tamsa Arfao, M. Lontsi Djimeli, Rv Nandjou Nguéfack, Moïse Nola, Me Nougang, et al.. Comparison of the inhibition of commensally and enteropathogenic E. coli strains in the presence of Eucalyptus microcorys leaves extract in aquatic microcosm. International Journal of Current Microbiology and Applied Sciences, Krishna Institute of Science, 2013, 2 (6), pp.80-96. 〈hal-00840183〉
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William Tottey, Jeremie Denonfoux, Faouzi Jaziri, Nicolas Parisot, Mohiedine Missaoui, et al.. The Human Gut Chip ‘‘HuGChip’’, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level. PLoS ONE, Public Library of Science, 2013, 449, pp.804 - 804. 〈10.1371/journal.pone.0062544.s004〉. 〈hal-01612757〉
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Mélanie Gerphagnon, Delphine Latour, Jonathan Colombet, Télesphore Sime-Ngando. Fungal parasitism: life cycle, dynamics and impact on cyanobacterial blooms. PLoS ONE, Public Library of Science, 2013, 8 (4), pp.e60894. 〈10.1371/journal.pone.0060894〉. 〈hal-00843243〉
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Olivier Lambert, Mélanie Piroux, Sophie Puyo, Chantal Thorin, Monique L'Hostis, et al.. Widespread occurrence of chemical residues in beehive matrices from apiaries located in different landscapes of Western France.. PLoS ONE, Public Library of Science, 2013, 8 (6), pp.e67007. 〈10.1371/journal.pone.0067007〉. 〈hal-01071820〉
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Simon Roux, François Enault, Gisèle Bronner, Daniel Vaulot, Patrick Forterre, et al.. Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses.. Nature Communications, Nature Publishing Group, 2013, 4, pp.2700. 〈10.1038/ncomms3700〉. 〈hal-00881062〉
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Emilie Dordet-Frisoni, Eric Baranowski, Aurélien Barré, Alain Blanchard, Marc Breton, et al.. Draft Genome Sequences of Mycoplasma auris and Mycoplasma yeatsii, Two Species of the Ear Canal of Caprinae. Genome Announcements, American Society for Microbiology, 2013, 1 (3), epub ahead of print. 〈10.1128/genomeA.00280-13〉. 〈hal-00907449〉
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Vincent Maire, Gaël Alvarez, J Colombet, Aurélie Comby, Romain Despinasse, et al.. An unknown oxidative metabolism substantially contributes to soil CO2 emissions. Biogeosciences, European Geosciences Union, 2013, 10, pp.1155-1167. 〈hal-01190438〉
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Isabelle Domaizon, Olga Savichtcheva, Didier Debroas, Fabien Arnaud, Clement Villar, et al.. DNA from lake sediments reveals the long-term dynamics and diversity of Synechococcus assemblages. Biogeosciences, European Geosciences Union, 2013, p. 3817-3838. 〈10.5194/bg-10-3817-2013〉. 〈halsde-00866805〉
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Virginie Dupuy, Pascal Sirand-Pugnet, Eric Baranowski, Aurélien Barré, Marc Breton, et al.. Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats. Genome Announcements, American Society for Microbiology, 2013, 1 (3), pp.e00354-13. 〈10.1128/genomeA.00354-13〉. 〈hal-00907450〉
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Lucía Manso-Silván, Florence Tardy, Eric Baranowski, Aurélien Barré, Alain Blanchard, et al.. Draft Genome Sequences of Mycoplasma alkalescens, Mycoplasma arginini, and Mycoplasma bovigenitalium, Three Species with Equivocal Pathogenic Status for Cattle. Genome Announcements, American Society for Microbiology, 2013, 1 (3), pp.e00348-13. 〈10.1128/genomeA.00348-13〉. 〈hal-00907454〉
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Benjamin Misson, Delphine Latour. Vertical Heterogeneity of Genotypic Structure and Toxic Potential within Populations of the Harmful Cyanobacterium Microcystis aeruginosa . Advances in Microbiology, Scientific Research Publishing, 2013. 〈hal-01826041〉
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Aurore Dubuffet, Judith E. Smith, Leellen Solter, M. Alejandra Perotti, Henk R. Braig, et al.. Specific Detection and Localization of Microsporidian Parasites in Invertebrate Hosts by Using In Situ Hybridization. Applied and Environmental Microbiology, American Society for Microbiology, 2013, 79 (1), pp.385-388. 〈10.1128/AEM.02699-12〉. 〈hal-01609937〉
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Conference papers

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Flore Ballaud, Alexis Dufresne, Andre-Jean Francez, Jonathan Colombet, Télesphore Sime-Ngando, et al.. Patterns of viral and microbial diversity in Sphagnum-dominated peatland using meta genomics. VIème Colloque AFEM “Microbiologie environnementale : du gène à l’écosystème”, Oct 2013, Clermont-Ferrand, France. 〈hal-01156599〉
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Nabaz Mohammed, Hélène Celle-Jeanton, Isabelle Batisson, Corinne Bardot, Jonathan Colombet, et al.. Integrated characterization of groundwater contamination in an alluvial system. Case study of Allier alluvial aquifer (Massif Central, France).. EGU General Assembly 2013, 2013, Vienna, Austria. 〈hal-00803038〉
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Clarisse Mallet, Isabelle Batisson, Pierre Joly, Frédérique Bonnemoy, Pascale Besse-Hoggan, et al.. Devenir et impacts d’un « cocktail » d’herbicides sur des groupes fonctionnels microbiens: élaboration de bioindicateurs de perturbations. Colloque de Prospective SIC, 2013, Paris, France. 2013. 〈hal-01606155〉
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Book sections

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Eric De Moulins-Beaufort, Philippe Poirier, Jean-Marc Ferry. De l’“ex-communication” des religions à l’insertion du dialogue interreligieux dans un espace postséculier. Lethielleux Editions. Gouvernance mondiale et éthique au XXIe siècle, pp177-207, 2013, 978-2249622502. 〈hal-01742837〉
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Philippe Poirier, Jean-Marc Ferry. Référentiel identitaire et justification publique. Face à la disjonction de l’Universel et du Commun, le défi de la sécularisation religieuse. Editions Parole et Silence. Démocratie(s) Liberté(s) et Religion(s), 2013, 978-2-88918-234-3. 〈hal-01742841〉
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Patents

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P Michaud, Céline Laroche, A Villay, M Roussel, M Diogon, et al.. Utilisation de polysaccharides sulfatés pour le traitement de la nosémose des abeilles. France, Patent n° : WO2014076261 A1. 2013. 〈hal-01115866〉
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Poster communications

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Flore Ballaud, Alexis Dufresne, Andre-Jean Francez, Jonathan Colombet, Télesphore Sime-Ngando, et al.. Viral and microbial diversity in a Sphagnum-dominated peatland using metagenomics. Colloque Génomique Environnementale ‘Diversité, évolution et fonctionnement du vivant à l’ère des nouvelles technologies de séquençage’, Aug 2013, Rennes, France. 〈hal-01159031〉
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Theses

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Julie Aufauvre. Impact de la microsporidie Nosema ceranae et d'insecticides neurotoxiques sur la santé de l'abeille domestique (Apis mellifera). Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2013. Français. 〈NNT : 2013CLF22427〉. 〈tel-00973858〉
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Mathieu Roudel. Diversité génétique et recherche de facteurs de virulence de Nosema ceranae, parasite de l'abeille mellifère. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2013. Français. 〈NNT : 2013CLF22414〉. 〈tel-00959521〉
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Mylène Hugoni. Structure et activité des Archaea planctoniques dans les écosystèmes aquatiques. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2013. Français. 〈NNT : 2013CLF22388〉. 〈tel-01136205〉
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Mélanie Gerphagnon. Ecologie des chytrides parasites de la cyanobactérie Anabaena macrospora. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2013. Français. 〈NNT : 2013CLF22385〉. 〈tel-01379598〉
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Simon Roux. Diversité, évolution et écologie virale : des communautés aux génotypes. Analyse bioinformatique de métagénomes viraux. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2013. Français. 〈NNT : 2013CLF22380〉. 〈tel-00908344〉
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Najwa Taïb. Analyse de la diversité microbienne par séquençage massif : méthodes et applications. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2013. Français. 〈NNT : 2013CLF22374〉. 〈tel-00926896〉
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Mathieu Floury. Analyse des tendances d'évolution de peuplements de macroinvertébrés benthiques dans un contexte de réchauffement des eaux. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2013. Français. 〈NNT : 2013CLF22344〉. 〈tel-00844377〉
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Jérémie Denonfoux. Détermination de sondes oligonucléotidiques pour outils moléculaires à haut débit : application pour le développement d'une nouvelle approche de capture de gènes pour l'écologie microbienne. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2013. Français. 〈NNT : 2013CLF22331〉. 〈tel-01077860〉
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2012

Journal articles

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Yves Basset, Lukas Cizek, Philippe Cuénoud, Raphael K Didham, François Guilhaumon, et al.. Arthropod diversity in a tropical forest.. Science, American Association for the Advancement of Science, 2012, 338 (6113), pp.1481-4. 〈10.1126/science.1226727〉. 〈hal-00817285〉
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Jean-François Mangot, Isabelle Domaizon, Najwa Taib, Nemr Marouni, Emilie Duffaud, et al.. Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes.. Environmental Microbiology, Wiley-Blackwell, 2012, epub ahead of print. 〈10.1111/1462-2920.12065〉. 〈hal-00821927〉
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Animesh Shukla, Avijit Biswas, Nicolas Blot, Frédéric Partensky, Jonathan A Karty, et al.. Phycoerythrin-specific bilin lyase-isomerase controls blue-green chromatic acclimation in marine Synechococcus.. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2012, 109 (49), pp.20136-41. 〈10.1073/pnas.1211777109〉. 〈hal-01071892〉
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Jean-François Carrias, Olivier Brouard, Céline Leroy, Régis Céréghino, Laurent Pelozuelo, et al.. An ant-plant mutualism induces shifts in the protist community structure of a tank-bromeliad. Basic and Applied Ecology, Elsevier, 2012, vol. 13, pp. 698-705. 〈10.1016/j.baae.2012.10.002〉. 〈hal-00913126〉
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Sirilaksana Patramool, Valérie Choumet, Pornapat Surasombatpattana, Laurence Sabatier, Frédéric Thomas, et al.. Update on the proteomics of major arthropod vectors of human and animal pathogens.. Proteomics, Wiley-VCH Verlag, 2012, 12 (23-24), pp.3510-23. 〈10.1002/pmic.201200300〉. 〈pasteur-01054612〉
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Dionigia Meloni, Philippe Poirier, Cléa Mantini, Christophe Noël, Nausicaa Gantois, et al.. Mixed human intra- and inter-subtype infections with the parasite Blastocystis sp.. Parasitology International, Elsevier, 2012, 61 (4), pp.719-22. 〈10.1016/j.parint.2012.05.012〉. 〈hal-00814275〉
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Olivier Lambert, Mélanie Piroux, Sophie Puyo, Chantal Thorin, Michaëlle Larhantec, et al.. Bees, honey and pollen as sentinels for lead environmental contamination.. Environmental Pollution, Elsevier, 2012, 170, pp.254-9. 〈10.1016/j.envpol.2012.07.012〉. 〈hal-00821898〉
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Guillaume Borrel, Jonathan Colombet, Agnès Robin, Anne-Catherine Lehours, David Prangishvili, et al.. Unexpected and novel putative viruses in the sediments of a deep-dark permanently anoxic freshwater habitat.. ISME Journal, Nature Publishing Group, 2012, 6 (11), pp.2119-27. 〈10.1038/ismej.2012.49〉. 〈hal-00819247〉
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Jean-François Carrias, Olivier Brouard, Céline Leroy, Régis Céréghino, Laurent Pélozuelo, et al.. An ant-plant mutualism induces shifts in the protist community structure of a tank-bromeliad. Basic and Applied Ecology, Elsevier, 2012, 13, pp.698-705. 〈hal-00817519〉
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Marc Saudreau, Sylvain Pincebourde, Mathieu Dassot, A. Adam, Hugh D Loxdale, et al.. On the canopy structure manipulation to buffer climate change effects on insect herbivore development. Trees - Structure and Function, Springer Verlag, 2012, 27, pp.239-248. 〈hal-00806964〉
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Claire Hennequin, Claire Aumeran, Frédéric Robin, Ousmane Traore, Christiane Forestier. Antibiotic resistance and plasmid transfer capacity in biofilm formed with a CTX-M-15-producing Klebsiella pneumoniae isolate.. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2012, 67 (9), pp.2123-30. 〈10.1093/jac/dks169〉. 〈hal-00815869〉
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Marlène Jobard, Serena Rasconi, Laurent Solinhac, Henry-Michel Cauchie, Télesphore Sime-Ngando. Molecular and morphological diversity of fungi and the associated functions in three European nearby lakes.. Environmental Microbiology, Wiley-Blackwell, 2012, 14 (9), pp.2480-94. 〈10.1111/j.1462-2920.2012.02771.x〉. 〈hal-00819272〉
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Eric Dugat-Bony, Corinne Biderre-Petit, Faouzi Jaziri, Maude David, Jérémie Denonfoux, et al.. In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes. Microbial Biotechnology, Wiley, 2012, 5 (5 SI), pp.642-653. 〈10.1111/j.1751-7915.2012.00339.x〉. 〈hal-00747255〉
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Ivan Wawrzyniak, Catherine Texier, Philippe Poirier, Eric Viscogliosi, Kevin S W Tan, et al.. Characterization of two cysteine proteases secreted by Blastocystis ST7, a human intestinal parasite.. Parasitology International, Elsevier, 2012, 61 (3), pp.437-42. 〈10.1016/j.parint.2012.02.007〉. 〈hal-00814173〉
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Elisabeth Scheer, Frédéric Delbac, Laszlo Tora, Dino Moras, Christophe Romier. TFIID TAF6-TAF9 complex formation involves the HEAT repeat-containing C-terminal domain of TAF6 and is modulated by TAF5 protein.. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2012, 287 (33), pp.27580-92. 〈10.1074/jbc.M112.379206〉. 〈hal-00821880〉
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Serena Rasconi, Nathalie Niquil, Télesphore Sime-Ngando. Phytoplankton chytridiomycosis: community structure and infectivity of fungal parasites in aquatic ecosystems.. Environmental Microbiology, Wiley-Blackwell, 2012, 14 (8), pp.2151-70. 〈10.1111/j.1462-2920.2011.02690.x〉. 〈hal-00819305〉
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Emmanuel Cornillot, Kamel Hadj-Kaddour, Amina Dassouli, Benjamin Noel, Vincent Ranwez, et al.. Sequencing of the smallest apicomplexan genome from the human pathogen Babesia Microti. Nucleic Acids Research, Oxford University Press, 2012, 40 (18), pp.9102-9114. 〈http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3467087/〉. 〈10.1093/nar/gks700〉. 〈lirmm-00818833〉
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Alain Dejean, Bruno Corbara, Frédéric Azémar, James M Carpenter. When attempts at robbing prey turn fatal.. Naturwissenschaften, Springer Verlag, 2012, 99 (7), pp.579-82. 〈10.1007/s00114-012-0929-x〉. 〈hal-00825764〉
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B. Farges, L. Poughon, D. Roriz, C. Creuly, C.G. Dussap, et al.. Axenic Cultures of Nitrosomonas europaea and Nitrobacter winogradskyi in Autotrophic Conditions: a New Protocol for Kinetic Studies. Applied Biochemistry and Biotechnology, Humana Press, 2012, 167 (5), Vol. 167 Issue 5, p1076-1091, 16p. 〈10.1007/s12010-012-9651-6〉. 〈hal-01115265〉
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Heather Bouman, Cécile Lep Ere, David J.Scanlan, Osvaldo Ulloa. Phytoplankton community structure in a high-nutrient, low-chlorophyll region of the eastern Pacific Subantarctic region during winter-mixed and summer-stratified conditions. Deep-Sea Research, 2012, I 69, pp.1-11. 〈hal-00848697〉
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Jean-Pierre Morel, Nicolas Marmier, Charlotte Hurel, Nicole Morel-Desrosiers. Effect of temperature on the sorption of europium on alumina: microcalorimetry and batch experiments.. Journal of Colloid and Interface Science, Elsevier, 2012, 376 (1), pp.196-201. 〈10.1016/j.jcis.2012.02.035〉. 〈hal-00822396〉
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Mathias Lorieux, Mélisande Blein, Jaime Lozano, Mathieu Bouniol, Gaétan Droc, et al.. In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches.. Plant Biotechnology Journal, Wiley, 2012, 10 (5), pp.555-68. 〈10.1111/j.1467-7652.2012.00689.x〉. 〈hal-00821958〉
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Laurence Delhaes, Sébastien Monchy, Emilie Frealle, Christine Hubans, Julia Salleron, et al.. The Airway Microbiota in Cystic Fibrosis: A Complex Fungal and Bacterial Community-Implications for Therapeutic Management. PLoS ONE, Public Library of Science, 2012, 7 (e36313), pp.4. 〈10.1371/journal.pone.0036313〉. 〈hal-00806782〉
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Olivier Brouard, Régis Cereghino, Bruno Corbara, Céline Leroy, Laurent Pelozuelo, et al.. Understorey environments influence functional diversity in tank-bromeliad ecosystems. Freshwater Biology, Wiley, 2012, 57 (4), pp.815-823. 〈hal-00819103〉
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Benjamin Misson, Florence Donnadieu-Bernard, Jean-Jacques Godon, Christian Amblard, Delphine Latour. Short- and long-term dynamics of the toxic potential and genotypic structure in benthic populations of Microcystis.. Water Research, IWA Publishing, 2012, 46 (5), pp.1438-46. 〈10.1016/j.watres.2011.11.011〉. 〈hal-00820329〉
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Benjamin Misson, Florence Donnadieu-Bernard, Jean-Jacques Godon, Christian Amblard, Delphine Latour. Short- and long-term dynamics of the toxic potential and genotypic structure in benthic populations of Microcystis. Water Research, IWA Publishing, 2012, 46 (5), pp.1438 - 1446. 〈10.1016/j.watres.2011.11.011〉. 〈hal-01826044〉
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Alain Dejean, James M Carpenter, Bruno Corbara, Pamela Wright, Olivier Roux, et al.. The hunter becomes the hunted: when cleptobiotic insects are captured by their target ants.. Naturwissenschaften, Springer Verlag, 2012, 99 (4), pp.265-73. 〈10.1007/s00114-012-0895-3〉. 〈hal-00825725〉
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Agostina V Marano, Frank H Gleason, Felix Bärlocher, Carmen L A Pires-Zottarelli, Osu Lilje, et al.. Quantitative methods for the analysis of zoosporic fungi.. Journal of Microbiological Methods, Elsevier, 2012, 89 (1), pp.22-32. 〈10.1016/j.mimet.2012.02.003〉. 〈hal-00819331〉
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Jonathan Colombet, Télesphore Sime-Ngando. Seasonal Depth-Related Gradients in Virioplankton: Lytic Activity and Comparison with Protistan Grazing Potential in Lake Pavin (France). MICROBIOLOGY OF AQUATIC SYSTEMS, 2012, 64, pp.67-78. 〈hal-00787061〉
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Claire Aumeran, E. Thibert, F. A. Chapelle, C. Hennequin, O. Lesens, et al.. Assessment on experimental bacterial biofilms and in clinical practice of the efficacy of sampling solutions for microbiological testing of endoscopes. Journal of Clinical Microbiology, American Society for Microbiology, 2012, 50 (3), pp.938-42. 〈10.1128/JCM.06221-11〉. 〈hal-00821095〉
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David Lopez, Gisèle Bronner, Nicole Brunel, Daniel Auguin, Sylvain Bourgerie, et al.. Insights into Populus XIP aquaporins: evolutionary expansion, protein functionality, and environmental regulation.. Journal of Experimental Botany, Oxford University Press (OUP), 2012, 63 (5), pp.2217-30. 〈10.1093/jxb/err404〉. 〈hal-00777008〉
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Bernard Viguès, Raghida Damaj. The adhesive disc in the mobilid ciliate Trichodina pediculus: evidence for centrin-related, calcium-sensitive filaments.. Cytoskeleton (Hoboken), 2012, 69 (2), pp.113-24. 〈10.1002/cm.21003〉. 〈hal-00814252〉
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Eric Dugat-Bony, Eric Peyretaillade, Nicolas Parisot, Corinne Biderre-Petit, Faouzi Jaziri, et al.. Detecting unknown sequences with DNA microarrays: explorative probe design strategies.. Environmental Microbiology, Wiley-Blackwell, 2012, 14 (2), pp.356-71. 〈10.1111/j.1462-2920.2011.02559.x〉. 〈hal-00822134〉
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Zéphyrin Fokam, Pierre Ngassam, Paul Alain Nana, Geneviève Bricheux, Philippe Bouchard, et al.. [Revision of of the subfamily of Metaracoelophryinae de Puytorac 1972 (Oligohymenophora: Hoplytophryida: Hoplytophryidae), astome ciliates of the digestive tract of Oligochaeta worms of Africa: description of five new species].. Parasite, EDP Sciences, 2012, 19 (1), pp.41-52. 〈inserm-00918206〉
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Zéphyrin Fokam, Pierre Ngassam, Paul Alain Nana, Geneviève Bricheux, Philippe Bouchard, et al.. [Revision of of the subfamily of Metaracoelophryinae de Puytorac 1972 (Oligohymenophora: Hoplytophryida: Hoplytophryidae), astome ciliates of the digestive tract of Oligochaeta worms of Africa: description of five new species].. Parasite, EDP Sciences, 2012, 19 (1), pp.41-52. 〈hal-00783597〉
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Frédéric Robin, Claire Hennequin, Marek Gniadkowski, Racha Beyrouthy, Joanna Empel, et al.. Virulence factors and TEM-type β-lactamases produced by two isolates of an epidemic Klebsiella pneumoniae strain.. Antimicrobial Agents and Chemotherapy, American Society for Microbiology, 2012, 56 (2), pp.1101-4. 〈10.1128/AAC.05079-11〉. 〈hal-00815978〉
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Michael Danger, Béatrice Allard, Mohamad-Bashir Arnous, Jean-François Carrias, Jacques Meriguet, et al.. Effects of food-web structure on the quantity and the elemental quality of sedimenting material in shallow lakes. Hydrobiologia, Springer, 2012, 679 (1), pp.251-266. 〈hal-00819129〉
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Benjamin Misson, D. Latour. Influence of light, sediment mixing, temperature and duration of the benthic life phase on the benthic recruitment of Microcystis. Journal of Plankton Research, Oxford University Press (OUP), 2012, 34 (2), pp.113 - 119. 〈10.1093/plankt/fbr093〉. 〈hal-01826046〉
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Kevin B Laupland, Jean-Ralph Zahar, Christophe Adrie, Carole Schwebel, Dany Goldgran-Toledano, et al.. Determinants of temperature abnormalities and influence on outcome of critical illness.. Critical Care Medicine, Lippincott, Williams & Wilkins, 2012, 40 (1), pp.145-51. 〈10.1097/CCM.0b013e31822f061d〉. 〈hal-00821909〉
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Olivier Lambert, Bruno Veyrand, Sophie Durand, Philippe Marchand, Bruno Le Bizec, et al.. Polycyclic aromatic hydrocarbons: bees, honey and pollen as sentinels for environmental chemical contaminants.. Chemosphere, Elsevier, 2012, 86 (1), pp.98-104. 〈10.1016/j.chemosphere.2011.09.025〉. 〈hal-00814214〉
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Claire Hennequin, Frédéric Robin, Nadège Cabrolier, Richard Bonnet, Christiane Forestier. Characterization of a DHA-1-producing Klebsiella pneumoniae strain involved in an outbreak and role of the AmpR regulator in virulence.. Antimicrobial Agents and Chemotherapy, American Society for Microbiology, 2012, 56 (1), pp.288-94. 〈10.1128/AAC.00164-11〉. 〈hal-00815428〉
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Benjamin Misson, Marion Sabart, Christian Amblard, Delphine Latour. Benthic survival of Microcystis: Long-term viability and ability to transcribe microcystin genes. Harmful Algae, Elsevier, 2012, 13, pp.20 - 25. 〈10.1016/j.hal.2011.09.010〉. 〈hal-01826048〉
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Céline Leroy, Bruno Corbara, Laurent Pélozuelo, Jean-François Carrias, Alain Dejean, et al.. Ant species identity mediates reproductive traits and allocation in an ant-garden bromeliad.. Annals of Botany, Oxford University Press (OUP), 2012, 109 (1), pp.145-52. 〈10.1093/aob/mcr253〉. 〈hal-00819112〉
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Paul Alain Nana, Zéphyrin Fokam, Serge Hubert Zébazé Togouet, Ajeagah Gideon Aghaindum, Geneviève Bricheux, et al.. Distribution of Astomatia Schewiakoff, 1896 and Hysterocinetidae Diesing, 1866 (Ciliophora, Oligohymenophora) along the digestive tract of Alma emini (Oligochaete, Glossoscolecidae) is correlated with physico-chemical parameters. Protistology, 2012, 7 (4), pp.193-207. 〈hal-00918063〉
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Julie Aufauvre, David Georges Biron, Cyril Vidau, Régis Fontbonne, Mathieu Roudel, et al.. Parasite-insecticide interactions: a case study of Nosema ceranae and fipronil synergy on honeybee.. Sci Rep, 2012, 2, pp.326. 〈10.1038/srep00326〉. 〈hal-00814027〉
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Paul Alain Nana, Zéphyrin Fokam, Guy Martial Ntoungwa Ebague, Pierre Ngassam, Geneviève Bricheux, et al.. Description of five new species of hysterocinetian ciliates (Ciliophora, Hysterocinetidae), endocommensal in a terrestrial oligochaete of the genus Alma from Cameroon. Protistology, 2012, 7 (2), pp.97-107. 〈hal-00917775〉
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Pierre Joly, Pascale Besse-Hoggan, Frédérique Bonnemoy, Isabelle Batisson, Jacques Bohatier, et al.. Impact of maize formulated herbidcides, Mesotrione and S-Metolachlor, applied alone and in mixture, on soil microbial communities. International Scholarly Research Network, ISRN Ecology, 2012, vol. 2012, ID 329898 (9 p.). 〈hal-00679861〉
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Daniella Mella-Flores, Christophe Six, Morgane Ratin, Frédéric Partensky, Christophe Boutte, et al.. Prochlorococcus and Synechococcus have Evolved Different Adaptive Mechanisms to Cope with Light and UV Stress.. Frontiers in microbiology, Frontiers Research Foundation, 2012, 3, pp.285. 〈10.3389/fmicb.2012.00285〉. 〈hal-00815833〉
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Simon Roux, François Enault, Agnès Robin, Viviane Ravet, Sébastien Personnic, et al.. Assessing the diversity and specificity of two freshwater viral communities through metagenomics.. PLoS ONE, Public Library of Science, 2012, 7 (3), pp.e33641. 〈10.1371/journal.pone.0033641〉. 〈hal-00819334〉
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Simon Roux, Mart Krupovic, Axel Poulet, Didier Debroas, François Enault. Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads.. PLoS ONE, Public Library of Science, 2012, 7 (7), pp.e40418. 〈10.1371/journal.pone.0040418〉. 〈hal-00816089〉
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F. Rodrigues, N. Boubals, M.-C. Charbonnel, Nicole Morel-Desrosiers. Thermodynamic approach of uranium(VI) extraction by N,N-(2-ethylhexyl)isobutyramide. Procedia Chemistry, 2012, 7, pp.59-65. 〈hal-00823220〉
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Luc P. Belzunces, Nicolas Blot, David Georges Biron, Cyril Vidau, Hicham El Alaoui, et al.. Laboratory approach to study toxico-pathological interactions in the honey bee Apis mellifera. Beebook, 2012, in press. 〈hal-00822429〉
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Isabelle Domaizon, Cécile Lepère, Didier Debroas, Marc Bouvy, Jean Francois Ghiglione, et al.. Short-term responses of unicellular planktonic eukaryotes to increases in temperature and UVB radiation.. BMC Microbiology, BioMed Central, 2012, 12, pp.202. 〈10.1186/1471-2180-12-202〉. 〈hal-00816078〉
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Benjamin Misson, Delphine Latour. Influence of light, sediment mixing, temperature and duration of the benthic life phase on the benthic recruitment of Microcystis. Journal of Plankton Research, Oxford University Press (OUP), 2012, 34 (2), pp.113-119. 〈hal-00820313〉
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Claire Valiente Moro, Geneviève Bricheux, Christophe Portelli, Jacques Bohatier. Comparative effects of the herbicides chlortoluron and mesotrione on freshwater microalgae. Environmental Toxicology and Chemistry, Wiley, 2012, 31 (4), pp.778-786. 〈10.1002/etc.1749〉. 〈halsde-00723029〉
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Philippe Poirier, Ivan Wawrzyniak, Christian Vivarès, Frédéric Delbac, Hicham El Alaoui. New insights into Blastocystis spp.: a potential link with irritable bowel syndrome.. PLoS Pathogens, Public Library of Science, 2012, 8 (3), pp.e1002545. 〈10.1371/journal.ppat.1002545〉. 〈hal-00814144〉
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Olivier Lesens, Anna Schmidt, Florence De Rancourt, Véronique Poirier, André Labbé, et al.. Health care support issues for internationally adopted children: a qualitative approach to the needs and expectations of families.. PLoS ONE, Public Library of Science, 2012, 7 (2), pp.e31313. 〈10.1371/journal.pone.0031313〉. 〈hal-00821106〉
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Alain Dejean, Jacques H C Delabie, Bruno Corbara, Fréderic Azémar, Sarah Groc, et al.. The ecology and feeding habits of the arboreal trap-jawed ant Daceton armigerum.. PLoS ONE, Public Library of Science, 2012, 7 (5), pp.e37683. 〈10.1371/journal.pone.0037683〉. 〈hal-00825759〉
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Daniel Vaulot, Cécile Lepère, Eve Toulza, Rodrigo De La Iglesia, Julie Poulain, et al.. Metagenomes of the picoalga Bathycoccus from the Chile coastal upwelling.. PLoS ONE, Public Library of Science, 2012, 7 (6), pp.e39648. 〈10.1371/journal.pone.0039648〉. 〈hal-00848707〉
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Eric Peyretaillade, Nicolas Parisot, Valérie Polonais, Sébastien Terrat, Jérémie Denonfoux, et al.. Annotation of microsporidian genomes using transcriptional signals.. Nature Communications, Nature Publishing Group, 2012, 3, pp.1137. 〈10.1038/ncomms2156〉. 〈hal-00813939〉
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Benjamin Misson, Marion Sabart, Christian Amblard, Delphine Latour. Benthic survival of Microcystis : Long-term viability and ability to transcribe microcystin genes. Harmful Algae, Elsevier, 2012, 13, pp.20-25. 〈hal-00820332〉
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Conference papers

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Jonathan Passerat-Palmbach, Arthur Forest, Julien Pal, Bruno Corbara, David Hill. Automatic Parallelization of a Gap Model using Java and OpenCL. European Simulation and Modelling Conference, Oct 2012, Essen, Belgium. pp.24-31, 2012. 〈hal-01083187〉
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Isabelle Domaizon, Olga Savichtcheva, Didier Debroas, Clement Villar, Cécile Pignol, et al.. Long term dynamics and diversity of freshwater picocyanobacteria: Coupling between molecular tool and paleolimniological approach. International paleolimnology symposium, 2012, Glasgow, United Kingdom. 〈halsde-00932018〉
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Marie-Elodie Perga, Benjamin Alric, Fabien Arnaud, Vincent Berthon, Didier Debroas, et al.. Gliding from limnology to paleolimnology to study the ecosystem-wide consequences of human pressures on lake food webs. International paleolimnology symposium, 2012, Glasgow, United Kingdom. 〈halsde-00931994〉
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Books

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Behzad Mostajir, Christian Amblard, Evelyne Buffan-Dubau, Rutger De Wit, Robert Lensi, et al.. LES RÉSEAUX TROPHIQUES MICROBIENS DES MILIEUX AQUATIQUES ET TERRESTRES. J.C. Bertrand et al. Presses Universitaires de Pau et des Pays de l'Adour, pp.28, 2012. 〈hal-00848692〉
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Theses

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Sandra Anne Angèle Renier. Déterminants protéiques de la voie de sécrétion Sec impliqués dans la formation de biofilm chez Listeria monocytogenes. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2012. Français. 〈NNT : 2012CLF22307〉. 〈tel-00844396〉
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Olivier Lambert. Contamination chimique de matrices apicoles au sein de ruchers appartenant à des structures paysagères différentes. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2012. Français. 〈NNT : 2012CLF22302〉. 〈tel-00833765〉
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Emeline Valton. Développement de biomarqueur Sentinelle en réponse à la pollution aquatique à partir de l'expression de protéines de phénotype "Multidrug Resistance" dans les érythrocytes de la truite Salmo trutta fario. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2012. Français. 〈NNT : 2012CLF22282〉. 〈tel-00926897〉
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Olivier Brouard. Les communautés microbiennes des phytotelmes des Broméliacées : structure et influence de l'habitat, des conditions environnementales et des interactions biologiques. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2012. Français. 〈NNT : 2012CLF22229〉. 〈tel-00741962〉
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Ivan Wawrzyniak. Génomique et post-génomique du parasite intestinal Blastocystis sp. sous-type 7. Evaluation de son pouvoir pathogène. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2012. Français. 〈NNT : 2012CLF22243〉. 〈tel-00741967〉
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2011

Journal articles

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Polly G Hill, Isabelle Mary, Da Purdie, Mv Zubkov. Similarity in microbial amino acid uptake in surface waters of the North and South Atlantic (sub-)tropical gyres. Progress in Oceanography, Elsevier, 2011, 91 (4), pp.437-446. 〈hal-00841497〉
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Cyril Vidau, Hicham El Alaoui, David Georges Biron, Frédéric Delbac. Mais où sont passées les abeilles ?. Biofutur, Elsevier - Cachan : Lavoisier, 2011, 327, pp.56-59. 〈hal-00825319〉
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Simon Roux, François Enault, Gisèle Bronner, Didier Debroas. Comparison of 16S rRNA and protein-coding genes as molecular markers for assessing microbial diversity (Bacteria and Archaea) in ecosystems.. FEMS Microbiology Ecology, Wiley-Blackwell, 2011, 78 (3), pp.617-28. 〈10.1111/j.1574-6941.2011.01190.x〉. 〈hal-00840983〉
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Olga Savichtcheva, Didier Debroas, Rainer Kurmayer, Clement Villar, Jean-Philippe Jenny, et al.. Quantitative PCR enumeration of total/toxic Planktothrix rubescens and total cyanobacteria in preserved DNA isolated from lake sediments.. Applied and Environmental Microbiology, American Society for Microbiology, 2011, 77 (24), pp.8744-53. 〈10.1128/AEM.06106-11〉. 〈hal-00840945〉
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Maarten Bekaert, Jean-Francois Timsit, Stijn Vansteelandt, Pieter Depuydt, Aurélien Vésin, et al.. Attributable mortality of ventilator-associated pneumonia: a reappraisal using causal analysis.. American Journal of Respiratory and Critical Care Medicine, American Thoracic Society, 2011, 184 (10), pp.1133-9. 〈10.1164/rccm.201105-0867OC〉. 〈hal-00841199〉
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Simon Roux, Michaël Faubladier, Antoine Mahul, Nils Paulhe, Aurélien Bernard, et al.. Metavir: a web server dedicated to virome analysis.. Bioinformatics, Oxford University Press (OUP), 2011, 27 (21), pp.3074-5. 〈10.1093/bioinformatics/btr519〉. 〈hal-00841495〉
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Delphine Boucher, Jean Baptiste Laffaire, Faouzi Jaziri, Christine David, Corinne Biderre-Petit, et al.. Bacterial community composition of biological degreasing systems and health risk assessment for workers.. Microbial Ecology, Springer Verlag, 2011, 62 (4), pp.868-81. 〈10.1007/s00248-011-9887-7〉. 〈hal-00842850〉
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Guillaume Borrel, Didier Jézéquel, Corinne Biderre-Petit, Nicole Morel-Desrosiers, Jean-Pierre Morel, et al.. Production and consumption of methane in freshwater lake ecosystems.. Research in Microbiology, Elsevier, 2011, 162 (9), pp.832-47. 〈10.1016/j.resmic.2011.06.004〉. 〈hal-00823217〉
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Regis Cereghino, Celine Leroy, Jean-François Carrias, Laurent Pelozuelo, Caroline Segura, et al.. Ant-plant mutualisms promote functional diversity in phytotelm communities. Functional Ecology, Wiley, 2011, 25 (5), pp.954-963. 〈hal-00817509〉
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Benjamin Misson, Marion Sabart, Christian Amblard, Delphine Latour. Benthic survival of Microcystis: Long-term viability and ability to transcribe microcystin genes. Harmful Algae, Elsevier, 2011, 13, pp.20-25. 〈hal-00848693〉
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Sandrine Demanèche, Jean-Michel Monier, Eric Dugat-Bony, Pascal Simonet. Exploration of horizontal gene transfer between transplastomic tobacco and plant-associated bacteria. FEMS Microbiology Ecology, Wiley-Blackwell, 2011, 78 (1), pp.129-136. 〈10.1111/j.1574-6941.2011.01126.x〉. 〈hal-00630134〉
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Dionigia Meloni, Giovanna Sanciu, Philippe Poirier, Hicham El Alaoui, Magali Chabé, et al.. Molecular subtyping of Blastocystis sp. isolates from symptomatic patients in Italy.. Parasitology Research, Springer Verlag (Germany), 2011, 109 (3), pp.613-9. 〈10.1007/s00436-011-2294-7〉. 〈hal-00825442〉
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Corinne Biderre-Petit, Didier Jézéquel, Eric Dugat-Bony, Filipa Lopes, Jan Kuever, et al.. Identification of microbial communities involved in the methane cycle of a freshwater meromictic lake.. FEMS Microbiology Ecology, Wiley-Blackwell, 2011, 77 (3), pp.533-45. 〈10.1111/j.1574-6941.2011.01134.x〉. 〈hal-00842871〉
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Bushra Parveen, Jean-Philippe Reveilliez, Isabelle Mary, Viviane Ravet, Gisèle Bronner, et al.. Diversity and dynamics of free-living and particle-associated Betaproteobacteria and Actinobacteria in relation to phytoplankton and zooplankton communities.. FEMS Microbiology Ecology, Wiley-Blackwell, 2011, 77 (3), pp.461-76. 〈10.1111/j.1574-6941.2011.01130.x〉. 〈hal-00841014〉
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Alexandre Lautrette, Carole Schwebel, Didier Gruson, R. W. Talbot, Jean-François Timsit, et al.. Transfer of take-home messages in graduate ICU education.. Intensive Care Med, 2011, 37 (8), pp.1323-30. 〈10.1007/s00134-011-2256-7〉. 〈hal-00842126〉
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Valerie Polonais, Michael Shea, Dominique Soldati-Favre. Toxoplasma gondii aspartic protease 1 is not essential in tachyzoites.. Experimental Parasitology, Elsevier, 2011, 128 (4), pp.454-9. 〈10.1016/j.exppara.2011.05.003〉. 〈hal-00820561〉
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Jean-Ralph Zahar, Jean-Francois Timsit, Maïté Garrouste-Orgeas, Adrien Français, Aurélien Vesin, et al.. Outcomes in severe sepsis and patients with septic shock: pathogen species and infection sites are not associated with mortality.. Critical Care Medicine, Lippincott, Williams & Wilkins, 2011, 39 (8), pp.1886-95. 〈10.1097/CCM.0b013e31821b827c〉. 〈hal-00841190〉
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Nicolas Blot, Daniella Mella-Flores, Christophe Six, Gildas Le Corguillé, Christophe Boutte, et al.. Light history influences the response of the marine cyanobacterium Synechococcus sp. WH7803 to oxidative stress.. Plant Physiology, American Society of Plant Biologists, 2011, 156 (4), pp.1934-54. 〈10.1104/pp.111.174714〉. 〈hal-00825364〉
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M. Bouvy, Y. Bettarel, C. Bouvier, I. Domaizon, S. Jacquet, et al.. Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change.. Environmental Microbiology, Wiley-Blackwell, 2011, 13 (7), pp.1842-57. 〈10.1111/j.1462-2920.2011.02498.x〉. 〈hal-00819823〉
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Angia Sriram Pradeep Ram, S. Rasconi, M. Jobard, S. Palesse, J. Colombet, et al.. High Lytic Infection Rates but Low Abundances of Prokaryote Viruses in a Humic Lake (Vassivie're, Massif Central, France). Applied and Environmental Microbiology, American Society for Microbiology, 2011, 77 (16), pp.5610-5618. 〈hal-00787191〉
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Natacha Mrozek, Alexandre Lautrette, Claire Aumeran, Henri Laurichesse, Christiane Forestier, et al.. Bloodstream infection after positive catheter cultures: what are the risks in the intensive care unit when catheters are routinely cultured on removal?. Critical Care Medicine, Lippincott, Williams & Wilkins, 2011, 39 (6), pp.1301-5. 〈10.1097/CCM.0b013e3182120190〉. 〈hal-00842131〉
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Cécile Lepère, Mikihide Demura, Masanobu Kawachi, Sarah Romac, Ian Probert, et al.. Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations.. FEMS Microbiology Ecology, Wiley-Blackwell, 2011, 76 (3), pp.513-23. 〈10.1111/j.1574-6941.2011.01072.x〉. 〈hal-00848702〉
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A.-E. Heng, M. H. Abdelkader, M. Diaconita, A. Nony, A. Guerraoui, et al.. Impact of short term use of interdialytic 60% ethanol lock solution on tunneled silicone catheter dysfunction.. Clinical Nephrology, Dustri-Verlag, 2011, 75 (6), pp.534-41. 〈hal-00841494〉
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Hélène Masclaux, Alexandre Bec, Maiko Kagami, Marie-Elodie Perga, Télesphore Sime-Ngando, et al.. Food quality of anemophilous plant pollen for zooplankton. Limnology and Oceanography, Association for the Sciences of Limnology and Oceanography, 2011, 56 (3), pp.939-946. 〈hal-00820085〉
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Stéphan Jacquet, Isabelle Domaizon, Sylvie Masquelier, Cécile Lepère, Laure Guillou, et al.. Virus, bactéries et protistes pathogènes du phytoplancton, le rôle insoupçonné des parasites dans le fonctionnement des écosystèmes aquatiques. Le Courrier de l'environnement de l'INRA, Paris : Institut national de la recherche agronomique Délégation permanente à l'environnement, 2011, 60 (60), pp.37-50. 〈hal-01196814〉
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Yvan Bettarel, Thierry Bouvier, Corinne Bouvier, Claire Carré, Anne Desnues, et al.. Ecological traits of planktonic viruses and prokaryotes along a full-salinity gradient.. FEMS Microbiology Ecology, Wiley-Blackwell, 2011, 76 (2), pp.360-72. 〈10.1111/j.1574-6941.2011.01054.x〉. 〈hal-00820091〉
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Delphine Gourcilleau, Catherine Lenne, Claudia Armenise, Bruno Moulia, Jean-Louis Julien, et al.. Phylogenetic study of plant Q-type C2H2 zinc finger proteins and expression analysis of poplar genes in response to osmotic, cold and mechanical stresses.. DNA Research, Oxford University Press (OUP), 2011, 18 (2), pp.77-92. 〈10.1093/dnares/dsr001〉. 〈hal-00842840〉
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France Denoeud, Michaël Roussel, Benjamin Noel, Ivan Wawrzyniak, Corinne Da Silva, et al.. Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite.. Genome Biology, BioMed Central, 2011, 12 (3), pp.R29. 〈10.1186/gb-2011-12-3-r29〉. 〈inserm-00617212〉
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Julien Pisson, Nicole Morel-Desrosiers, Jean-Pierre Morel, André De Roy, Fabrice Leroux, et al.. Tracking the Structural Dynamics of Hybrid Layered Double Hydroxides. Chemistry of Materials, American Chemical Society, 2011, 23 (6), pp.1482-1490. 〈hal-00823208〉
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Eric Dugat-Bony, Mohieddine Missaoui, Eric Peyretaillade, Corinne Biderre-Petit, Ourdia Bouzid, et al.. HiSpOD: probe design for functional DNA microarrays.. Bioinformatics, Oxford University Press (OUP), 2011, 27 (5), pp.641-8. 〈10.1093/bioinformatics/btq712〉. 〈hal-00842882〉
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Philippe Poirier, Ivan Wawrzyniak, Aurélie Albert, Hicham El Alaoui, Frédéric Delbac, et al.. Development and evaluation of a real-time PCR assay for detection and quantification of blastocystis parasites in human stool samples: prospective study of patients with hematological malignancies.. Journal of Clinical Microbiology, American Society for Microbiology, 2011, 49 (3), pp.975-83. 〈10.1128/JCM.01392-10〉. 〈hal-00825471〉
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Rozenn Thomas, Lyria Berdjeb, Télesphore Sime-Ngando, Stéphan Jacquet. Viral abundance, production, decay rates and life strategies (lysogeny versus lysis) in Lake Bourget (France).. Environmental Microbiology, Wiley-Blackwell, 2011, 13 (3), pp.616-30. 〈10.1111/j.1462-2920.2010.02364.x〉. 〈hal-00820093〉
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Valérie Polonais, Bernardo Javier Foth, Krishna Chinthalapudi, Jean-Baptiste Marq, Dietmar J Manstein, et al.. Unusual anchor of a motor complex (MyoD-MLC2) to the plasma membrane of Toxoplasma gondii.. Traffic, Wiley, 2011, 12 (3), pp.287-300. 〈10.1111/j.1600-0854.2010.01148.x〉. 〈hal-00820570〉
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Gauthier Dobigny, Philippe Poirier, Karmadine Hima, Odile Cabaret, Philippe Gauthier, et al.. Molecular survey of rodent-borne Trypanosoma in Niger with special emphasis on T. lewisi imported by invasive black rats. Acta Tropica, Elsevier, 2011, 117 (3), pp.21126503. 〈10.1016/j.actatropica.2010.11.004〉. 〈hal-01113935〉
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Tsuneo Tanaka, T. F. Thingstad, Urania Christaki, J. Colombet, Véronique Cornet-Barthaux, et al.. Lack-of P-limitation of phytoplankton and heterotrophic prokaryotes in surface waters of three anticyclonic eddies in the stratified Mediterranean Sea. Biogeosciences, European Geosciences Union, 2011, 8, pp.525-538. 〈10.5194/bg-8-525-2011〉. 〈hal-00573163〉
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E. Feschet-Chassot, V. Raspal, Y. Sibaud, Ok Awitor, Frédérique Bonnemoy, et al.. Tunable functionality and toxicity studies of titanium dioxide nanotube layers. Thin Solid Films, Elsevier, 2011, 519 (8), pp.2564-2568. 〈hal-00830577〉
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Benjamin Misson, Marion Sabart, Christian Amblard, Delphine Latour. INVOLVEMENT OF MICROCYSTINS AND COLONY SIZE IN THE BENTHIC RECRUITMENT OF THE CYANOBACTERIUM MICROCYSTIS (CYANOPHYCEAE)1. European Journal of Phycology, Taylor & Francis, 2011, 47 (1), pp.42 - 51. 〈10.1111/j.1529-8817.2010.00943.x〉. 〈hal-01826049〉
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Corinne Biderre-Petit, Delphine Boucher, Jan Kuever, Patrick Albéric, Didier Jézéquel, et al.. Identification of sulfur-cycle prokaryotes in a low-sulfate lake (Lake Pavin) using aprA and 16S rRNA gene markers.. Microbial Ecology, Springer Verlag, 2011, 61 (2), pp.313-27. 〈10.1007/s00248-010-9769-4〉. 〈hal-00842948〉
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Urania Christaki, F. Van Wambeke, D. Lefevre, A. Lagaria, L. Prieur, et al.. Impact of anticyclonic mesoscale features on the Mediterranean Sea's microbial food web.. Biogeosciences Discussions, European Geosciences Union, 2011, 8, pp.185-220. 〈10.5194/bgd-8-185-2011〉. 〈hal-00757865〉
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Jaroslaw Wiszniowski, Alexandra Ter Halle, Claire Richard, Frédérique Bonnemoy, Jacques Bohatier. TOXICITY OF SULCOTRIONE PHOTOPRODUCTS MIXTURE TOWARDS VIBRIO FISCHERI IN THE AQUATIC ENVIRONMENT. Archives of Environmental Protection, 2011, 37 (4), pp.15-23. 〈hal-00830581〉
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Cyril Vidau, Marie Diogon, Julie Aufauvre, Régis Fontbonne, Bernard Viguès, et al.. Déclin des colonies d'abeilles et origine multifactorielle : cas de Nosema ceranae et des insecticides. La santé de l'abeille, 2011, 245 (9-10), pp.417-426. 〈hal-01115873v2〉
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S. Fleutot, Hervé Martinez, Jean-Charles Dupin, Isabelle Baraille, C. Forano, et al.. Experimental (X-Ray Photoelectron Spectroscopy) and theoretical studies of benzene based organics intercalated into layered double hydroxide. Solid State Sci., 2011, 13 (9), pp.1676--1686. 〈10.1016/j.solidstatesciences.2011.05.007〉. 〈hal-01503978〉
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Olivier Brouard, Anne-Hélène Le Jeune, Céline Leroy, Régis Cereghino, Olivier Roux, et al.. Are algae relevant to the detritus-based food web in tank-bromeliads?. PLoS ONE, Public Library of Science, 2011, 6 (5), pp.e20129. 〈10.1371/journal.pone.0020129〉. 〈hal-00819161〉
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Bertrand Evrard, Sophie Coudeyras, Annie Dosgilbert, Nicolas Charbonnel, Josette Alamé, et al.. Dose-dependent immunomodulation of human dendritic cells by the probiotic Lactobacillus rhamnosus Lcr35. PLoS ONE, Public Library of Science, 2011, 6 (4), pp.e18735. 〈10.1371/journal.pone.0018735〉. 〈hal-00841317〉
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Alain Dejean, Bruno Corbara, Céline Leroy, Jacques H C Delabie, Vivien Rossi, et al.. Inherited biotic protection in a neotropical pioneer plant.. PLoS ONE, Public Library of Science, 2011, 6 (3), pp.e18071. 〈10.1371/journal.pone.0018071〉. 〈hal-00825845〉
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Xiao Li Shi, Cécile Lepère, David J Scanlan, Daniel Vaulot. Plastid 16S rRNA gene diversity among eukaryotic picophytoplankton sorted by flow cytometry from the South Pacific Ocean.. PLoS ONE, Public Library of Science, 2011, 6 (4), pp.e18979. 〈10.1371/journal.pone.0018979〉. 〈hal-00848706〉
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Alain Dejean, Régis Céréghino, James M Carpenter, Bruno Corbara, Bruno Hérault, et al.. Climate change impact on neotropical social wasps.. PLoS ONE, Public Library of Science, 2011, 6 (11), pp.e27004. 〈10.1371/journal.pone.0027004〉. 〈hal-00825825〉
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Cyril Vidau, Marie Diogon, Julie Aufauvre, Régis Fontbonne, Bernard Viguès, et al.. Exposure to sublethal doses of fipronil and thiacloprid highly increases mortality of honeybees previously infected by Nosema ceranae.. PLoS ONE, Public Library of Science, 2011, 6 (6), pp.e21550. 〈10.1371/journal.pone.0021550〉. 〈hal-00814778〉
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Fleur Ponton, Fernando Otálora-Luna, Thierry Lefèvre, Patrick M Guerin, Camille Lebarbenchon, et al.. Water-seeking behavior in worm-infected crickets and reversibility of parasitic manipulation.. Behavioral Ecology, Oxford University Press (OUP), 2011, 22 (2), pp.392-400. 〈10.1093/beheco/arq215〉. 〈hal-00814753〉
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Kevin B Laupland, Benoit Misset, Bertrand Souweine, Alexis Tabah, Elie Azoulay, et al.. Mortality associated with timing of admission to and discharge from ICU: a retrospective cohort study.. BMC Health Services Research, BioMed Central, 2011, 11, pp.321. 〈10.1186/1472-6963-11-321〉. 〈hal-00842124〉
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Télesphore Sime-Ngando, Nathalie Niquil. Editorial: 'Disregarded' microbial diversity and ecological potentials in aquatic systems: a new paradigm shift ahead. Hydrobiologia, Springer, 2011, 659, pp.1-4. 〈hal-00825304〉
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Télesphore Sime-Ngando, Nathalie Niquil. Editorial: 'Disregarded' microbial diversity and ecological potentials in aquatic systems: a new paradigm shift ahead. Hydrobiologia, Springer, 2011, 659 (1), pp.1-4. 〈hal-00820220〉
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Emmanuel Canet, David Osman, Jérome Lambert, Christophe Guitton, Anne-Elisabeth Heng, et al.. Acute respiratory failure in kidney transplant recipients: a multicenter study.. Critical Care, BioMed Central, 2011, 15 (2), pp.R91. 〈10.1186/cc10091〉. 〈hal-00841211〉
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Julien Pisson, Nicole Morel-Desrosiers, Jean-Pierre Morel, André De Roy, Fabrice Leroux, et al.. Toward a better understanding of hybrid LDH interlayer structure and dynamics. Chemistry of Materials, American Chemical Society, 2011, 23, pp.1482-1490. 〈hal-00477687〉
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Benjamin Misson, Marion Sabart, Christian Amblard, Delphine Latour. Involvement of microcystins and colony size in the benthic recruitment of the cyanobacterium Microcystis (Cyanophyceae).. Journal of Phycology, Wiley, 2011, 47 (1), pp.42-51. 〈hal-00820324〉
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P.G. Hill, Isabelle Mary, D.A. Purdie, M.V. Zubkov. Similarity in microbial amino acid uptake in surface waters of the North and South Atlantic (sub-)tropical gyres.. Progress in Oceanography, Elsevier, 2011, 91 (4), pp.437-446. 〈hal-00842135〉
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C. Leroy, N. Séjalon-Delmas, A. Jauneau, M.X. Ruiz-Gonzalez, H. Gryta, et al.. Trophic mediation by a fungus in an ant-plant mutualism. Journal of Ecology, Wiley, 2011, 99, pp.583-590. 〈hal-00598276〉
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Céline Leroy, Nathalie Séjalon-Delmas, Alain Jauneau, Mario-Xavier Ruiz-Gonzalez, Hervé Gryta, et al.. Trophic mediation by a fungus in an ant-plant mutualism. Journal of Ecology, Wiley, 2011, 99, pp.583-590. 〈hal-00818792〉
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Jean-François Carrias, Céline Leroy, Régis Céréghino, Anne-Catherine Lehours, Laurent Pélozuelo, et al.. Des plantes tropicales qui forment des mares : les broméliacées-citerne Un écosystème aquatique miniature capital pour la biodiversité. Le Courrier de la Nature, Société nationale de protection de la nature (France), 2011, 261, pp.20-27. 〈hal-00849049〉
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Frank H Gleason, Frithjof C Kuepper, James P Amon, Kathryn Picard, Claire M M Gachon, et al.. Zoosporic true fungi in marine ecosystems: a review. Marine and Freshwater Research, CSIRO Publishing, 2011, 62 (4), pp.383-393. 〈hal-00820103〉
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F. Lopes, Eric Viollier, A. Thiam, Gil Michard, G. Abril, et al.. Biogeochemical modelling of anaerobic vs. aerobic methane oxidation in a meromictic crater lake (Lake Pavin, France). Applied Geochemistry, Elsevier, 2011, 26, pp.1919-1932. 〈10.1016/j.apgeochem.2011.06.021〉. 〈insu-00651276〉
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Boutheina Grami, Serena Rasconi, Nathalie Niquil, Marlène Jobard, Blanche Saint-Béat, et al.. Functional effects of parasites on food web properties during the spring diatom bloom in Lake Pavin: a linear inverse modeling analysis.. PLoS ONE, Public Library of Science, 2011, 6 (8), pp.e23273. 〈10.1371/journal.pone.0023273〉. 〈hal-00819808〉
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Christian Jeanthon, Dominique Boeuf, Océane Dahan, Florence Le Gall, Laurence Garczarek, et al.. Diversity of cultivated and metabolically active aerobic anoxygenic phototrophic bacteria along an oligotrophic gradient in the Mediterranean Sea. Biogeosciences, European Geosciences Union, 2011, 8 (7), pp.1955-1970. 〈10.5194/bg-8-1955-2011〉. 〈hal-01218510〉
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Eric Peyretaillade, Hicham El Alaoui, Marie Diogon, Valérie Polonais, Nicolas Parisot, et al.. Extreme reduction and compaction of microsporidian genomes.. Research in Microbiology, Elsevier, 2011, 162 (6), pp.598-606. 〈10.1016/j.resmic.2011.03.004〉. 〈hal-00814808〉
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Conference papers

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Faouzi Jaziri, Sébastien Cipière, Mohieddine Missaoui, Denonfoux Jérémie, Eric Dugat-Bony, et al.. Détermination de sondes oligonucléotidiques pour biopuces phylogénétiques en environnement grille de calcul. Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France. 〈hal-00658712〉
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Trung-Tung Doan, Hong Quang Nguyen, Najwa Taib, Jean-Christophe Charvy, Gisèle Bronner, et al.. Portage de ePANAM sur la grille de calcul. Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France. 〈hal-00660147〉
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Book sections

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D. Debroas, F. Enault, Isabelle Jouan-Dufournel, G. Bronner, Jean-François Humbert. Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in lakes. Frans J. de Bruijn. Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats, Jon Wiley and Sons Publishers, pp.287-293, 2011. 〈bioemco-00640523〉
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Dg Biron, D Nedelkov, D Missée, P Holzmuller. Proteomics and Host Pathogen Interactions: A Bright Future?. Genetics and Evolution of Infectious Diseases, 2011. 〈hal-01115245〉
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Philippe Cuny, Cristiana Cravo-Laureau, Vincent Grossi, Franck Gilbert, Cécile Militon. Biodegradation of Hydrocarbons in Bioturbated Marine Sediments. Koukkou, Anna-Irini. MICROBIAL BIOREMEDIATION OF NON-METALS: CURRENT RESEARCH, Caister Academic Press, pp.55-92, 2011. 〈hal-00657077〉
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Theses

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Guillaume Borrel. Diversité des archées et implication de la composante procaryote dans le cycle biogéochimique du méthane en milieu aquatique continental : études taxonomiques et fonctionnelles dans la colonne d'eau et les sédiments anoxiques du lac Pavin. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2011. Français. 〈NNT : 2011CLF22176〉. 〈tel-00932300〉
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Eric Dugat-Bony. Caractérisation des capacités métaboliques des populations microbiennes impliquées dans les processus de bioremédiation des chloroéthènes par des approches moléculaires haut débit : les biopuces ADN fonctionnelles. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2011. Français. 〈NNT : 2011CLF22175〉. 〈tel-00719578〉
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Benjamin Olivier Misson. Potentiel toxique et structure génétique de populations de Microcystis en lien avec les différentes phases de son cycle de vie. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2011. Français. 〈NNT : 2011CLF22168〉. 〈tel-00678587〉
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Michaël Roussel. Séquençage du génome du parasite intestinal Blastocystis sp. (ST7) : vers une meilleure compréhension des capacités métaboliques d'organites apparentés aux mitochondries chez ce microorganisme anaérobie. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2011. Français. 〈NNT : 2011CLF22164〉. 〈tel-00678598〉
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Hélène Masclaux. Diversité des interactions trophiques à l'interface microorganismes - microcrustacés dans une zone littorale à macrophytes : conséquences sur le transfert des acides gras essentiels. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2011. Français. 〈NNT : 2011CLF22137〉. 〈tel-00673430〉
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Alexandre Michelet. Recherche de nouveaux actifs d'origine microalgale d'intérêt en dermocosmétique : antiacnéens et conservateurs potentiels. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2011. Français. 〈NNT : 2011CLF22119〉. 〈tel-01308513〉
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2010

Journal articles

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Paul Alain Nana, Pierre Ngassam, Zéphyrin Fokam, Geneviève Bricheux, Philippe Bouchard, et al.. [Morphological variations of the nuclear apparatus of astome ciliates Almophrya bivacuolata and A. maediovacuolata (protozoa: ciliophora) endocommensal of terricolous oligochaetes in Cameroon].. Parasite, EDP Sciences, 2010, 17 (4), pp.293-7. 〈hal-00783602〉
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Jenny Telleria, David Georges Biron, Jean-Paul Brizard, Edith Demettre, Martial Séveno, et al.. Phylogenetic character mapping of proteomic diversity shows high correlation with subspecific phylogenetic diversity in Trypanosoma cruzi.. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2010, 107 (47), pp.20411-6. 〈10.1073/pnas.1015496107〉. 〈hal-00814838〉
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Bruno Corbara. Recherches en canopée. Biofutur, Elsevier - Cachan : Lavoisier, 2010, Biofutur 315, Dossier Canopées; la vie des cimes. 〈hal-00846282〉
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Jérôme Orivel, Bruno Corbara, Alain Dejean. Contraintes et adaptation à la vie arboricole chez les fourmis.. Biofutur, Elsevier - Cachan : Lavoisier, 2010, Biofutur 315, Dossier Canopées; la vie des cimes. 〈hal-00846271〉
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Céline Leroy, Régis Céréghino, Jean-François Carrias, Laurent Pélozuelo, Alain Dejean, et al.. Quelques aspects de la vie d'epiphyte vasculaire. Biofutur, Elsevier - Cachan : Lavoisier, 2010, 315, pp.vol 315. 〈hal-00846263〉
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Cécile Militon, Delphine Boucher, Cédric Vachelard, Geoffrey Perchet, Vincent Barra, et al.. Bacterial community changes during bioremediation of aliphatic hydrocarbon-contaminated soil. FEMS Microbiology Ecology, Wiley-Blackwell, 2010, pp.1-13. 〈10.1111/j.1574-6941.2010.00982.X〉. 〈hal-00538045〉
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Marlène Jobard, Serena Rasconi, Télesphore Sime-Ngando. Fluorescence in situ hybridization of uncultured zoosporic fungi: Testing with clone-FISH and application to freshwater samples using CARD-FISH. Journal of Microbiological Methods, Elsevier, 2010, 83 (2), pp.236-43. 〈10.1016/j.mimet.2010.09.006〉. 〈hal-00529649〉
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Claire M M Gachon, Télesphore Sime-Ngando, Martina Strittmatter, Aurélie Chambouvet, Gwang Hoon Kim. Algal diseases: spotlight on a black box.. Trends in Plant Science, Elsevier, 2010, 15 (11), pp.633-40. 〈10.1016/j.tplants.2010.08.005〉. 〈hal-00820237〉
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Karine Frénal, Valérie Polonais, Jean-Baptiste Marq, Rolf Stratmann, Julien Limenitakis, et al.. Functional dissection of the apicomplexan glideosome molecular architecture.. Cell Host and Microbe, Elsevier, 2010, 8 (4), pp.343-57. 〈10.1016/j.chom.2010.09.002〉. 〈hal-00820623〉
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Sylvie Nélieu, Frédérique Bonnemoy, Jean-Louis Bonnet, Luz Lefeuvre, Damien Baudiffier, et al.. Ecotoxicological effects of diuron and chlorotoluron nitrate-induced photodegradation products : monospecific and aquatic mesocosm-integrated studies. Environmental Toxicology and Chemistry, Wiley, 2010, 29 (xx), pp.xxx-xxx. 〈10.1002/etc.341〉. 〈hal-00528143〉
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Alain Dejean, Céline Leroy, Bruno Corbara, Régis Céréghino, Olivier Roux, et al.. A temporary social parasite of tropical plant-ants improves the fitness of a myrmecophyte.. Naturwissenschaften, Springer Verlag, 2010, 97 (10), pp.925-34. 〈10.1007/s00114-010-0710-y〉. 〈hal-00818203〉
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A S Pradeep Ram, Mohamad-Bashir Arnous, Michael Danger, Jean-François Carrias, Gérard Lacroix, et al.. High and differential viral infection rates within bacterial 'morphopopulations' in a shallow sand pit lake (Lac de Créteil, France).. FEMS Microbiology Ecology, Wiley-Blackwell, 2010, 74 (1), pp.83-92. 〈10.1111/j.1574-6941.2010.00920.x〉. 〈hal-00527103〉
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Isabelle Mary, Anna Oliver, Paul Skipp, Ross Holland, Juliette Topping, et al.. Metaproteomic and metagenomic analyses of defined oceanic microbial populations using microwave cell fixation and flow cytometric sorting.. FEMS Microbiology Ecology, Wiley-Blackwell, 2010, 74 (1), pp.10-8. 〈10.1111/j.1574-6941.2010.00927.x〉. 〈hal-00528837〉
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Cesare Accinelli, Maria Ludovica Saccà, Isabelle Batisson, Jerker Fick, Mariangela Mencarelli, et al.. Removal of oseltamivir (Tamiflu) and other selected pharmaceuticals from wastewater using a granular bioplastic formulation entrapping propagules of Phanerochaete chrysosporium.. Chemosphere, Elsevier, 2010, 81 (3), pp.436-43. 〈10.1016/j.chemosphere.2010.06.074〉. 〈hal-00529226〉
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Télesphore Sime-Ngando, Soizick Lucas, Agnès Robin, Kimberly Pause Tucker, Jonathan Colombet, et al.. Diversity of virus-host systems in hypersaline Lake Retba, Senegal.. Environmental Microbiology, Wiley-Blackwell, 2010, epub ahead of print. 〈10.1111/j.1462-2920.2010.02323.x〉. 〈hal-00527107〉
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Valerie Polonais, Dominique Soldati-Favre. Versatility in the acquisition of energy and carbon sources by the Apicomplexa.. Biology of the Cell, Wiley, 2010, 102 (8), pp.435-45. 〈10.1042/BC20100005〉. 〈hal-00820630〉
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Catherine Texier, Cyril Vidau, Bernard Viguès, Hicham El Alaoui, Frédéric Delbac. Microsporidia: a model for minimal parasite-host interactions.. Current Opinion in Microbiology, Elsevier, 2010, 13 (4), pp.443-449. 〈10.1016/j.mib.2010.05.005〉. 〈hal-00526579〉
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Christian Kolowrat, Frédéric Partensky, Daniella Mella-Flores, Gildas Le Corguillé, Christophe Boutte, et al.. Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511.. BMC Microbiology, BioMed Central, 2010, 10, pp.204. 〈10.1186/1471-2180-10-204〉. 〈hal-00529495〉
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Marion Sabart, David Pobel, Enora Briand, Bruno Combourieu, Mj Salençon, et al.. Spatiotemporal Variations in Microcystin Concentrations and in the Proportions of Microcystin-Producing Cells in Several Microcystis aeruginosa Populations. Applied and Environmental Microbiology, American Society for Microbiology, 2010, 76 (14), pp.4750-4759. 〈10.1128/AEM.02531-09〉. 〈bioemco-00498643〉
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Guillaume Borrel, Anne-Catherine Lehours, Corinne Bardot, Xavier Bailly, Gérard Fonty. Members of candidate divisions OP11, OD1 and SR1 are widespread along the water column of the meromictic Lake Pavin (France).. Archiv für Mikrobiologie, 2010, 192 (7), pp.559-67. 〈10.1007/s00203-010-0578-4〉. 〈hal-00528275〉
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Mario X. Ruiz-González, Bruno Corbara, Céline Leroy, Alain Dejean, Jérôme Orivel. The Weaver Wasp: Spinning Fungus into a Nest. Biotropica, Wiley, 2010, 42 (4), pp.402-404. 〈10.1111/j.1744-7429.2010.00645.x〉. 〈hal-01095857〉
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Cécile Lepère, Sylvie Masquelier, Jean-François Mangot, Didier Debroas, Isabelle Domaizon. Vertical structure of small eukaryotes in three lakes that differ by their trophic status: a quantitative approach. ISME Journal, Nature Publishing Group, 2010, 4, pp.1509-1519. 〈10.1038/ismej.2010.83〉. 〈hal-00528243〉
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Aurélie Descroix, Alexandre Bec, Gilles Bourdier, Denis Sargos, Jeremy Sauvanet, et al.. Fatty acids as biomarkers to indicate main carbon sources of four major invertebrate families in a large River (the Allier, France). Fundamental and Applied Limnology, E Schweizerbart Science Publishers, 2010, 177 (1), pp.39 - 55. 〈10.1127/1863-9135/2010/0177-0039〉. 〈hal-01826050〉
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Nathalie Niquil, Maiko Kagami, Jotaro Urabe, Urania Christaki, Eric Viscogliosi, et al.. Potential role of fungi in plankton food web functioning and stability: a simulation analysis based on Lake Biwa inverse model. Hydrobiologia, Springer, 2010, epub ahead of print. 〈10.1007/s10750-010-0308-6〉. 〈hal-00528608〉
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Ladawan Wasinpiyamongkol, Sirilaksana Patramool, Natthanej Luplertlop, Pornapat Surasombatpattana, Souleymane Doucoure, et al.. Blood-feeding and immunogenic Aedes aegypti saliva proteins.. Proteomics, Wiley-VCH Verlag, 2010, 10 (10), pp.1906-16. 〈10.1002/pmic.200900626〉. 〈hal-00820653〉
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Régis Céréghino, Céline Leroy, Alain Dejean, Bruno Corbara. Ants mediate the structure of phytotelm communities in an ant-garden bromeliad.. Ecology, Ecological Society of America, 2010, 91 (5), pp.1549-56. 〈hal-00817485〉
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Régis Céréghino, Céline Leroy, Alain Dejean, Bruno Corbara. Ants mediate the structure of phytotelm communities in an ant-garden bromeliad. Ecology, Ecological Society of America, 2010, vol. 91, pp. 1549-1556. 〈10.1890/09-1534.1〉. 〈hal-00911501〉
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Valérie Polonais, Muriel Mazet, Ivan Wawrzyniak, Catherine Texier, Nicolas Blot, et al.. The human microsporidian Encephalitozoon hellem synthesizes two spore wall polymorphic proteins useful for epidemiological studies.. Infection and Immunity, American Society for Microbiology, 2010, 78 (5), pp.2221-30. 〈10.1128/IAI.01225-09〉. 〈hal-00527872〉
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Ziguo Zhang, S Mark Roe, Marie Diogon, Eric Kong, Hicham El Alaoui, et al.. Molecular structure of the N-terminal domain of the APC/C subunit Cdc27 reveals a homo-dimeric tetratricopeptide repeat architecture.. Journal of Molecular Biology, Elsevier, 2010, 397 (5), pp.1316-28. 〈10.1016/j.jmb.2010.02.045〉. 〈hal-00528189〉
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Apostolos-Manuel Koussoroplis, Alexandre Bec, Marie Elodie Perga, Emmanuil Koutrakis, Christian Desvilettes, et al.. Nutritional importance of minor dietary sources for leaping grey mullet Liza saliens (Mugilidae) during settlement: insights from fatty acid δ13C analysis. Marine Ecology Progress Series, Inter-Research, 2010, 404, pp.207-217. 〈hal-00525536〉
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Télesphore Sime-Ngando, Emilie Lefèvre, Franck H. Gleason. Hidden diversity among aquatic heterotrophic flagellates: ecological potentials of zoosporic fungi. Hydrobiologia, Springer, 2010, epub ahead of print. 〈10.1007/s10750-010-0230-y〉. 〈hal-00528599〉
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Hala Zahreddine, Huimin Zhang, Marie Diogon, Yasuko Nagamatsu, Michel Labouesse. CRT-1/calreticulin and the E3 ligase EEL-1/HUWE1 control hemidesmosome maturation in C. elegans development.. Current Biology - CB, Elsevier, 2010, 20 (4), pp.322-7. 〈10.1016/j.cub.2009.12.061〉. 〈hal-00528183〉
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Julie Sarfati, Anne Guiochon-Mantel, Philippe Rondard, Isabelle Arnulf, Alfons Garcia-Piñero, et al.. A comparative phenotypic study of kallmann syndrome patients carrying monoallelic and biallelic mutations in the prokineticin 2 or prokineticin receptor 2 genes.. Journal of Clinical Endocrinology and Metabolism, Endocrine Society, 2010, 95 (2), pp.659-69. 〈10.1210/jc.2009-0843〉. 〈hal-00625329〉
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Angia Sriram Pradeep Ram, Télesphore Sime-Ngando. Resources drive trade-off between viral lifestyles in the plankton: evidence from freshwater microbial microcosms. Environmental Microbiology, Wiley-Blackwell, 2010, 12 (2), pp.467-79. 〈10.1111/j.1462-2920.2009.02088.x〉. 〈hal-00527101〉
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Philippe Holzmuller, Pascal Grébaut, Gérard Cuny, David Georges Biron. Tsetse flies, trypanosomes, humans and animals: what is proteomics revealing about their crosstalks?. Expert Review of Proteomics, Taylor & Francis, 2010, 7 (1), pp.113-26. 〈10.1586/epr.09.92〉. 〈hal-00814847〉
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S. Daval, P. Poirier, J. Armenaud, M. Cambon, V. Livrelli. Développement d’une technique de PCR quantitative en temps réel dans le diagnostic de la toxoplasmose chez des patients greffés de moelle osseuse. Pathologie Biologie, Elsevier Masson, 2010, 58 (1), pp.19892493. 〈10.1016/j.patbio.2009.07.013〉. 〈hal-01113954〉
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A S Pradeep Ram, Y. Nishimura, Y. Tomaru, K. Nagasaki, T. Nagata. Seasonal variation in viral-induced mortality of bacterioplankton in the water column of a large mesotrophic lake (Lake Biwa, Japan). Aquatic Microbial Ecology, Inter Research, 2010, 58, pp.249-259. 〈hal-00815026〉
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Binhui Wu, Jing Yin, Catherine Texier, Michaël Roussel, Kevin Shyong-Wei Tan. Blastocystis legumain is localized on the cell surface, and specific inhibition of its activity implicates a pro-survival role for the enzyme.. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2010, 285 (3), pp.1790-8. 〈10.1074/jbc.M109.049064〉. 〈hal-00529650〉
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Alain Dejean, James M Carpenter, Marc Gibernau, Maurice Leponce, Bruno Corbara. Nest relocation and high mortality rate in a Neotropical social wasp: Impact of an exceptionally rainy La Niña year.. Comptes Rendus Biologies, Elsevier Masson, 2010, 333 (1), pp.35-40. 〈10.1016/j.crvi.2009.10.007〉. 〈hal-00817397〉
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Laetitia Souppart, Hanaa Moussa, Amandine Cian, Giovanna Sanciu, Philippe Poirier, et al.. Subtype analysis of Blastocystis isolates from symptomatic patients in Egypt.. Parasitology Research / Journal of Parasitology, 2010, 106 (2), pp.505-11. 〈10.1007/s00436-009-1693-5〉. 〈hal-00527863〉
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Sylvie Miquel, Eric Peyretaillade, Laurent Claret, Amélie De Vallée, Carole Dossat, et al.. Complete genome sequence of Crohn's disease-associated adherent-invasive E. coli strain LF82.. PLoS ONE, Public Library of Science, 2010, 5 (9), epub ahead of print. 〈10.1371/journal.pone.0012714〉. 〈hal-00529639〉
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Alain Dejean, Céline Leroy, Bruno Corbara, Olivier Roux, Régis Céréghino, et al.. Arboreal ants use the "Velcro(R) principle" to capture very large prey.. PLoS ONE, Public Library of Science, 2010, 5 (6), pp.e11331. 〈10.1371/journal.pone.0011331〉. 〈hal-00818187〉
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Alexandre Bec, Dominik Martin-Creuzburg, Erik Von Alert. Fatty acid composition of the heterotrophic nanoflagellate Paraphysomonas sp. : influence of diet and de novo synthesis. Aquatic Biology, Inter-Research, 2010, 9, pp.107-112. 〈10.3354/ab00244〉. 〈hal-00525888〉
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S. Badel, F. Callet, Céline Laroche, C. Gardarin, E. Petit, et al.. A new tool to detect high viscous exopolymers from microalgae. Journal of Industrial Microbiology and Biotechnology, Springer Verlag, 2010, epub ahead of print. 〈10.1007/s10295-010-0775-9〉. 〈hal-00529790〉
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Sébastien Terrat, Eric Peyretaillade, Olivier Gonçalves, Eric Dugat-Bony, Fabrice Gravelat, et al.. Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development.. BMC Bioinformatics, BioMed Central, 2010, 11, pp.478. 〈10.1186/1471-2105-11-478〉. 〈hal-00529644〉
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Doreen Manuela Floss, Michael Mockey, Galliano Zanello, Damien Brosson, Marie Diogon, et al.. Expression and immunogenicity of the mycobacterial Ag85B/ESAT-6 antigens produced in transgenic plants by elastin-like peptide fusion strategy.. Journal of Biomedicine and Biotechnology, Hindawi Publishing Corporation, 2010, 2010, pp.274346. 〈10.1155/2010/274346〉. 〈hal-00528178〉
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Roberto Bertoni, Cristiana Callieri, Gianluca Corno, Serena Rasconi, Emanuele Caravati, et al.. Long-term trends of epilimnetic bacteria and organic carbon in a deep holo-oligomictic lake. Hydrobiologia, Springer, 2010, 644, pp.279-287. 〈hal-00529606〉
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Télesphore Sime-Ngando, Nathalie Niquil. Editorial: ‘Disregarded' microbial diversity and ecological potentials in aquatic systems: a new paradigm-shift ahead. Hydrobiologia, Springer, 2010, epub ahead of print. 〈10.1007/s10750-010-0511-5〉. 〈hal-00528604〉
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Jean-François Mangot, Didier Debroas, Isabelle Domaizon. Review of the Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly discovered in lacustrine systems. Hydrobiologia, Springer, 2010, pp.xxx-xxx. 〈10.1007/s10750-010-0268-x〉. 〈hal-00528246〉
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Stéphane Pesce, Fabrice Martin-Laurent, Nadine Rouard, Agnès Robin, Bernard Montuelle. Evidence for adaptation of riverine sediment microbial communities to diuron mineralization: incidence of runoff and soil erosion. Journal of Soils and Sediments, Springer Verlag, 2010, 10 (4), pp.698-707. 〈hal-00529700〉
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M. Misson, Marion Sabart, Christian Amblard, Delphine Latour. Implications of microcystins in the benthic recruitment of the cyanobacterium Microcystis (Cyanophyceae). Journal of Phycology, Wiley, 2010, epub ahead of print. 〈hal-00529704〉
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Emilie Lefèvre, Marlène Jobard, Jean-Stéphane Venisse, Alexandre Bec, Maiko Kagami, et al.. Development of a Real-Time PCR assay for quantitative assessment of uncultured freshwater zoosporic fungi. Journal of Microbiological Methods, Elsevier, 2010, 81 (1), pp.69-76. 〈10.1016/j.mimet.2010.02.002〉. 〈hal-00964807〉
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Emilie Lefèvre, Marlène Jobard, Jean-Stéphane Venisse, Alexandre Bec, Maiko Kagami, et al.. Development of a Real-Time PCR assay for quantitative assessment of uncultured freshwater zoosporic fungi. Journal of Microbiological Methods, Elsevier, 2010, 81 (1), pp.69-76. 〈hal-00525875〉
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Paul Alain Nana, Pierre Ngassam, Zéphyrin Fokam, Geneviève Bricheux, Philippe Bouchard, et al.. Variations morphologiques de l'appareil nucléaire chez les ciliés astomes AlmophryA bivAcuolAtA et A. mediovAcuolAtA (protozoa : ciliophora) endocommensaux d'oligochètes terricoles du Cameroun. Parasite, EDP Sciences, 2010, pp.293-297. 〈hal-01070965〉
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Serena Rasconi, Marlène Jobard, Télesphore Sime-Ngando. Parasitic fungi of phytoplankton: Ecological roles and implications for microbial food webs. Aquatic Microbial Ecology, Inter Research, 2010, epub ahead of print. 〈10.3354/ame01448〉. 〈hal-00527379〉
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Alexandre Bec, Marie Elodie Perga, Christian Desvilettes, Gilles Bourdier. How well can the fatty acid content of lake seston be predicted from its taxonomic composition ?. Freshwater Biology, Wiley, 2010, 55 (9), pp.1958-1972. 〈hal-00525878〉
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Aurélie Descroix, Christian Desvilettes, Alexandre Bec, P. Martin, Gilles Bourdier. Influence of natural food on growth and fatty acid composition of restocked salmon parr along the longitudinal gradient of a large temperate river : the Allier. Canadian Journal of Fisheries and Aquatic Sciences, NRC Research Press, 2010, 67, pp.659-672. 〈hal-00525876〉
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Marlène Jobard, Serena Rasconi, Télesphore Sime-Ngando. Diversity and functions of microscopic fungi: a missing component in pelagic food webs. Aquatic Sciences - Research Across Boundaries, Springer Verlag, 2010, 72 (3), pp.255-268. 〈hal-00527380〉
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Mohamad-Bashir Arnous, Nicolas Courcol, Jean-François Carrias. The significance of transparent exopolymeric particles in the vertical distribution of bacteria and heterotrophic nanoflagellates in Lake Pavin. Aquatic Sciences - Research Across Boundaries, Springer Verlag, 2010, 72 (2), pp.245-253. 〈hal-00530005〉
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Alain Dejean, Brian L Fisher, Bruno Corbara, Raymond Rarevohitra, Richard Randrianaivo, et al.. Spatial distribution of dominant arboreal ants in a malagasy coastal rainforest: gaps and presence of an invasive species.. PLoS ONE, Public Library of Science, 2010, 5 (2), pp.e9319. 〈10.1371/journal.pone.0009319〉. 〈hal-00817444〉
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Régis Céréghino, Céline Leroy, Alain Dejean, Bruno Corbara. Ants mediate the structure of phytotelm communities in an ant garden bromeliad. Ecology, Ecological Society of America, 2010, 91 (5), pp.1549-1556. 〈hal-01091094〉
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Cécile Militon, Delphine Boucher, Cédric Vachelard, Vincent Barra, J. Troquet, et al.. Bacterial community changes during bioremediation of aliphatic hydrocarbon-contaminated soil. FEMS Microbiology Ecology, Wiley-Blackwell, 2010, epub ahead of print. 〈10.1111/j.1574-6941.2010.00982.x〉. 〈hal-00529619〉
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Anne-Catherine Lehours, Marion Rabiet, Nicole Morel-Desrosiers, Jean-Pierre Morel, Lionel Jouve, et al.. Ferric iron reduction by fermentative strain BS2 isolated from an iron-rich anoxic environment (Lake Pavin, France). Geomicrobiology Journal, Taylor & Francis, 2010, 27 (8), pp.714-722. 〈10.1080/01490451003597663〉. 〈hal-00526142〉
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Olivier Crouzet, Isabelle Batisson, Pascale Besse-Hoggan, Frédérique Bonnemoy, Corinne Bardot, et al.. Response of soil microbial communities to the herbicide mesotrione: A dose-effect microcosm approach. Soil Biology and Biochemistry, Elsevier, 2010, pp.193-202. 〈10.1016/j.soilbio.2009.10.016〉. 〈halsde-00525145〉
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Conference papers

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Olivier Crouzet, Pascale Besse-Hoggan, Isabelle Batisson, Frédérique Bonnemoy, Jacques Bohatier, et al.. Réponses des microorganismes d'un sol suite à l'application de mésotrione (herbicide) : des communautés procaryotes globales aux groupes fonctionnels du cycle de l'azote. 8ème Congrès national de la SFM, Jun 2010, Marseille, France. 〈hal-00493316〉
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Isabelle Batisson, Olivier Crouzet, Pascale Besse-Hoggan, Martine Sancelme, Jean-François Mangot, et al.. Caractérisation d'une souche bactérienne isolée d'un agrosystème français capable de biotransformer la mésotrione. 8ème Congrès national de la SFM, Jun 2010, Marseille, France. 〈hal-00493313〉
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Book sections

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K. Eric Wommack, Télesphore Sime-Ngando, Danielle M. Winget, Sanchita Jamindar, Rebekah R. Helton. Filtration-based methods for the collection of viral concentrates from large water samples. Manual of Aquatic Viral Ecology (MAVE), Advancing the Science for Limnology and Oceanography (ASLO), pp.110-117, 2010. 〈hal-00528769〉
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Isabelle Batisson, Martine Sancelme, Clarisse Mallet, Pascale Besse-Hoggan. Fate and environmental impact of the recently marketed herbicide Mesotrione: coupling biological and chemical studies for a global overview. Current Research, Technology and Education Topics in Applied Microbiology and Microbial Biotechnology, A. Mendez Vilas Ed, Formatex Research Center, pp.287-294, 2010, Microbiology Book Series. 〈hal-00566176〉
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Books

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J. Colombet, Télesphore Sime-Ngando. Virus et prophages dans les écosystèmes aquatiques. Editions Universitaires Européennes, pp.204, 2010. 〈hal-00527392〉
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Télesphore Sime-Ngando, Emilie Lefèvre. Molecular diversity of heterotrophic flagellates in aquatic ecosystems. Editions Universitaires Européennes, pp.125, 2010. 〈hal-00527387〉
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Nathalie Niquil, Télesphore Sime-Ngando. Editorial: ‘Disregarded' microbial diversity and ecological potentials in aquatic systems: a new paradigm-shift ahead. Springer, Special Issue, 2010. 〈hal-00527385〉
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Theses

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Marlène Portas. Diversité phylogénétique et fonctionnelle des Eumycètes dans les écosystèmes pélagiques. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2010. Français. 〈NNT : 2010CLF22090〉. 〈tel-00769938〉
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Mohamad-Bashir Arnous. Les Particules d'Exopolymères Transparentes (Transparent Exopolymer Particles, TEP) en milieu pélagique lacustre : relation avec le phytoplancton et rôle dans les réseaux trophiques microbiens. Sciences du Vivant [q-bio]. Université Blaise Pascal - Clermont-Ferrand II, 2010. Français. 〈NNT : 2010CLF22066〉. 〈tel-00629661〉
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Sébastien Terrat. Nouveau design de sondes pour biopuces ADN fonctionnelles et caractérisation des capacités de biodégradation des communautés bactériennes de sols pollués par des hydrocarbures. Sciences du Vivant [q-bio]. Université Blaise Pascal - Clermont-Ferrand II, 2010. Français. 〈NNT : 2010CLF22061〉. 〈tel-00629656〉
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Apostolos-Manuel Koussoroplis. Sources de carbone et d'acides gras essentiels pour les juvéniles de Liza saliens (Pisces, Mugilidae) dans le réseau trophique d'une lagune côtière méditerranéenne : approches in situ par biomarqueurs lipidiques et isotopiques. Sciences agricoles. Université Blaise Pascal - Clermont-Ferrand II, 2010. Français. 〈NNT : 2010CLF22055〉. 〈tel-00600250〉
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2009

Journal articles

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M. Sabart, D. Pobel, D. Latour, J. Robin, Mj Salençon, et al.. Spatiotemporal changes in the genetic diversity in French bloom-forming populations of the toxic cyanobacterium, Microcystis aeruginosa. Environmental Microbiology Reports, Wiley, 2009, 1 (4), pp.263-272. 〈10.1111/j.1758-2229.2009.00042.x〉. 〈bioemco-00452843〉
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John Dolan, B. Mostajir, Télesphore Sime-Ngando. Rassoulzadegan@Villefranche : 3 Decades of Aquatic Microbial Ecology. Microbial Ecology, Springer Verlag, 2009, 57 (3), pp.1. 〈hal-00528558〉
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J. Colombet, M. Charpin, A. Robin, C. Portelli, Cécile Amblard, et al.. Seasonal depth-related gradients in virioplankton: standing stock and relationships with microbial communities in Lake Pavin (France). Microbial Ecology, Springer Verlag, 2009, 58 (4), pp.728-36. 〈10.1007/s00248-009-9535-7〉. 〈hal-00527098〉
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Cristiana Callieri, Gianluca Corno, Emanuele Caravati, Serena Rasconi, Mario Contesini, et al.. Bacteria, archaea, and crenarchaeota in the epilimnion and hypolimnion of a deep holo-oligomictic lake.. Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75 (22), pp.7298-300. 〈10.1128/AEM.01231-09〉. 〈hal-00529614〉
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Souad Hadjoudja, Chantal Vignoles, Véronique Deluchat, Jean-François Lenain, Anne-Hélène Le Jeune, et al.. Short term copper toxicity on Microcystis aeruginosa and Chlorella vulgaris using flow cytometry.. Aquat Toxicol, 2009, 94 (4), pp.255-64. 〈10.1016/j.aquatox.2009.07.007〉. 〈hal-00653617〉
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Franck H. Gleason, Maiko Kagami, V. Marano Agostina, Télesphore Sime-Ngando. Fungal zoospores are valuable food resources in aquatic ecosystems. Supplement to Mycologia, 2009, 60 (5), pp.1-3. 〈hal-00527081〉
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Stéphane Pesce, Isabelle Batisson, Corinne Bardot, Céline Fajon, Christophe Portelli, et al.. Response of spring and summer riverine microbial communities following glyphosate exposure.. Ecotoxicology and Environmental Safety, Elsevier, 2009, 72 (7), pp.1905-12. 〈10.1016/j.ecoenv.2009.07.004〉. 〈hal-00528337〉
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Delphine Boucher, Didier Debroas. Impact of environmental factors on couplings between bacterial community composition and ectoenzymatic activities in a lacustrine ecosystem. FEMS Microbiology Ecology, Wiley-Blackwell, 2009, 70 (1), pp.66-78. 〈10.1111/j.1574-6941.2009.00730.x〉. 〈hal-00528210〉
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Jean-François Mangot, Cécile Lepère, Christophe Bouvier, Didier Debroas, Isabelle Domaizon. Community structure and dynamics of small eukaryotes targeted by new oligonucleotide probes: new insight into the lacustrine microbial food web. Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75 (19), pp.6373-81. 〈10.1128/AEM.00607-09〉. 〈hal-00528240〉
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Claire Valiente Moro, Olivier Crouzet, Séréna Rasconi, Antoine Thouvenot, Gérard Coffe, et al.. New design strategy for development of specific primer sets for PCR-based detection of Chlorophyceae and Bacillariophyceae in environmental samples.. Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75 (17), pp.5729-33. 〈10.1128/AEM.00509-09〉. 〈hal-00528341〉
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Laetitia Souppart, Giovanna Sanciu, Amandine Cian, Ivan Wawrzyniak, Frédéric Delbac, et al.. Molecular epidemiology of human Blastocystis isolates in France.. Parasitology Research / Journal of Parasitology, 2009, 105 (2), pp.413-21. 〈10.1007/s00436-009-1398-9〉. 〈hal-00527838〉
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Jacques H.C. Delabie, Régis Céréghino, Sarah Groc, Andrea Dejean, Marc Gibernau, et al.. Ants as biological indicators of Wayana Amerindian land use in French Guiana. Comptes Rendus Biologies, Elsevier Masson, 2009, 332 (7), pp.673-684. 〈10.1016/j.crvi.2009.01.006〉. 〈hal-01083754〉
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Jonathan E Urch, Ramon Hurtado-Guerrero, Damien Brosson, Zhanliang Liu, Vincent G H Eijsink, et al.. Structural and functional characterization of a putative polysaccharide deacetylase of the human parasite Encephalitozoon cuniculi.. Protein Science, Wiley, 2009, 18 (6), pp.1197-209. 〈10.1002/pro.128〉. 〈hal-00529768〉
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Sylvie Nélieu, François Perreau, Frédérique Bonnemoy, Martine Ollitrault, Didier Azam, et al.. Sunlight nitrate-induced photodegradation of chlorotoluron: evidence of the process in aquatic mesocosms.. Environmental Science & Technology, American Chemical Society, 2009, 43 (9), pp.3148-54. 〈hal-00528334〉
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Jean-François Brugère, Agnès Mihajlovski, Mohieddine Missaoui, Pierre Peyret. Tools for stools: the challenge of assessing human intestinal microbiota using molecular diagnostics. Expert Review of Molecular Diagnostics, Expert Reviews (formerly Future Drugs), 2009, 9 (4), pp.353-65. 〈10.1586/erm.09.16〉. 〈hal-00529610〉
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Anne Roué-Le Gall, Michel Poulin, Didier Debroas, Nicolas Flipo. A physical-microbial food web coupled model to study the evolution of the ecological functioning of a new reservoir after its flooding (Sep, Puy de Dôme). Ecological Modelling, Elsevier, 2009, 220 (6), pp.841-856. 〈10.1016/j.ecolmodel.2008.12.002〉. 〈hal-00528241〉
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Nicolas Blot, Xian-Jun Wu, Jean-Claude Thomas, Juan Zhang, Laurence Garczarek, et al.. Phycourobilin in trichromatic phycocyanin from oceanic cyanobacteria is formed post-translationally by a phycoerythrobilin lyase-isomerase.. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2009, 284 (14), pp.9290-8. 〈10.1074/jbc.M809784200〉. 〈hal-00529452〉
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Enora Briand, Nicolas Escoffier, Cécile Straub, Marion Sabart, Catherine Quiblier, et al.. Spatiotemporal changes in the genetic diversity of a bloom-forming Microcystis aeruginosa (cyanobacteria) population.. ISME Journal, Nature Publishing Group, 2009, 3 (4), pp.419-29. 〈10.1038/ismej.2008.121〉. 〈hal-00476872〉
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Serena Rasconi, Marlène Jobard, Lionel Jouve, Télesphore Sime-Ngando. Use of calcofluor white for detection, identification, and quantification of phytoplanktonic fungal parasites.. Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75 (8), pp.2545-53. 〈10.1128/AEM.02211-08〉. 〈hal-00527082〉
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Etienne Yergeau, Sung A Schoondermark-Stolk, Eoin L Brodie, Sébastien Déjean, Todd Z Desantis, et al.. Environmental microarray analyses of Antarctic soil microbial communities.. ISME Journal, Nature Publishing Group, 2009, 3 (3), pp.340-51. 〈10.1038/ismej.2008.111〉. 〈hal-00529762〉
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Télesphore Sime-Ngando, Jonathan Colombet. Virus and prophages in aquatic ecosystems. Canadian Journal of Microbiology, NRC Research Press, 2009, 55 (2), pp.95-109. 〈10.1139/w08-099〉. 〈hal-00529979〉
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Alexandra Ter Halle, Jaroslaw Wiszniowski, Adnane Hitmi, Gérard Ledoigt, Frédérique Bonnemoy, et al.. Photolysis of the herbicide sulcotrione: formation of a major photoproduct and its toxicity evaluation. Pesticide management science, 2009, 65, pp.14-18. 〈10.1002/ps.1637〉. 〈hal-00359523〉
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M.-E. Perga, Alexandre Bec, O. Anneville. Origins of carbon sustaining the growth of whitefish Coregonus lavaretus early larval stages in Lake Annecy: insights from fatty-acid biomarkers.. Journal of Fish Biology, Wiley, 2009, 74 (1), pp.2-17. 〈10.1111/j.1095-8649.2008.02105.x〉. 〈hal-00525275〉
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Anne-Catherine Lehours, Jean-François Carrias, Christian Amblard, Télesphore Sime-Ngando, Gérard Fonty. Les bactéries du lac Pavin. Pour la science, Pour la science, 2009, pp.xxx-xxx. 〈hal-00528566〉
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Alexandra Ter Halle, Jaroslaw Wiszniowski, Adnane Hitmi, Gérand Ledoigt, Frédérique Bonnemoy, et al.. Photolysis of the herbicide sulcotrione: formation of a major photoproduct and its toxicity evaluation.. Pest Management Science, Wiley, 2009, 65 (1), pp.14-8. 〈10.1002/ps.1637〉. 〈hal-00528119〉
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Mohieddine Missaoui, Cécile Militon, David Hill, Pierre Peyret. BLASTOG: a Parallel BLAST-Based Software for Functional Microarrays Probe Design Using the EGEE Computing Grid. GCA'09 – The 2009 International Conference on Grid Computing and Applications at Monte Carlo Resort, 2009, pp.126-132. 〈hal-00529601〉
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Olivier Crouzet, Isabelle Batisson, Pascale Besse-Hoggan, Frédérique Bonnemoy, C. Bardot, et al.. Response of soil microbial communities to the herbicide mesotrione: a dose-effect microcosm approach. Soil Biol. Biochem., 2009, pp.193-202. 〈hal-00444981〉
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J.H.C. Delabie, R. Céréghino, S. Groc, An. Déjean, M. Gibernau, et al.. Ants as biological indicators of Wayana Amerindians land use in French Guiana.. Comptes Rendus Biologies, Elsevier Masson, 2009, In press. 〈hal-00425989〉
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B. Corbara, J. M. Carpenter, R. Céréghino, M. Gibernau, M. Leponce, et al.. Diversity and nest site selection of social wasps along Guianese forest edges : assessing the influence of arboreal ants.. Comptes Rendus Biologies, Elsevier Masson, 2009, pp.In Press. 〈hal-00425829〉
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Aurélie Descroix, Christian Desvilettes, P. Martin, O. Anneville, Alexandre Bec, et al.. Feeding, growth and nutritional status of restocked salmon parr along the longitudinal gradient of a large European river: the Allier. Ecology of Fresh Water Fish, 2009, 18 (2), pp.282-296. 〈hal-00525872〉
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Hicham El Alaoui, D. Poincloux, Marie Diogon, M. Roussel, Catherine Texier, et al.. Des insectes à l'homme : la formidable réussite infectieuse des microsporidies. La santé de l'abeille, 2009, pp.xxx-xxx. 〈hal-00529799〉
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Jean-Pierre Morel, Nicolas Marmier, Charlotte Hurel, Nicole Morel-Desrosiers. Acid-base properties of the alumina surface: influence of the titration procedures on the microcalorimetric results. Journal of Colloid and Interface Science, Elsevier, 2009, 338, pp.10-15. 〈hal-00419633〉
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Ignacio González, Sébastien Déjean, P. G. P. Martin, Olivier Gonçalves, Philippe Besse, et al.. Highlighting relationships between heterogeneous biological data through graphical displays based on regularized canonical correlation analysis. Journal of Biological Systems, World Scientific Publishing, 2009, 17 (2), pp.173-199. 〈10.1142/S0218339009002831〉. 〈hal-00529973〉
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Diana Cuc, Sabine Bouguet-Bonnet, Nicole Morel-Desrosiers, Jean-Pierre Morel, Pierre Mutzenhardt, et al.. Location of a metallic cation complexed in a calixarene as determined by calixarene 13C spin relaxation. Application to cesium and thallium complexed by p-sulfonatocalix[4]arene in water. Journal of Physical Chemistry B, American Chemical Society, 2009, 113, pp.3499-3503. 〈hal-00419677〉
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Diana Cuc, Sabine Bouguet-Bonnet, Nicole Morel-Desrosiers, Jean-Pierre Morel, Pierre Mutzenhardt, et al.. Behavior of cesium and thallium cations inside a calixarene cavity as probed by nuclear spin relaxation. Evidence of cation-pi interactions in water. Journal of Physical Chemistry B, American Chemical Society, 2009, 113, pp.10800-10807. 〈hal-00419687〉
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Sarah Groc, Jérôme Orivel, Alain Dejean, Jean-Michel Martin, Marie-Pierre Etienne, et al.. Baseline study of the leaf-litter ant fauna in a French Guianese forest. Insect Conservation and Diversity, 2009, 2, pp.183-193. 〈10.1111/j.1752-4598.2009.00060.x 〉. 〈hal-01084030〉
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Eric Peyretaillade, Olivier Gonçalves, Sébastien Terrat, Eric Dugat-Bony, Patrick Wincker, et al.. Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation. BMC Genomics, BioMed Central, 2009, 10, pp.607. 〈10.1186/1471-2164-10-607〉. 〈hal-00461524〉
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Isabelle Batisson, Olivier Crouzet, Pascale Besse-Hoggan, Martine Sancelme, Jean-François Mangot, et al.. Isolation and characterization of mesotrione-degrading Bacillus sp. from soil. Environmental Pollution, Elsevier, 2009, pp.1195-1201. 〈hal-00365544〉
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Raghida Damaj, Sébastien Pomel, Geneviève Bricheux, Gérard Coffe, Bernard Viguès, et al.. Cross-study analysis of genomic data defines the ciliate multigenic epiplasmin family: strategies for functional analysis in Paramecium tetraurelia.. BMC Evolutionary Biology, BioMed Central, 2009, 9, pp.125. 〈10.1186/1471-2148-9-125〉. 〈hal-00526083〉
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Jannet Elloumi, Jean-François Carrias, Habib Ayadi, Télesphore Sime-Ngando, Abderrahmen Bouaïn. Communities structure of the planktonic halophiles in the solar saltern of Sfax, Tunisia. Estuarine, Coastal and Shelf Science, Elsevier, 2009, 81 (1), pp.19-26. 〈hal-00526256〉
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Anne-Catherine Lehours, Corinne Bardot, Pierre-François Pelisson, Annie Guedon, Stéphane Pesce, et al.. Successional changes in bacterial community assemblages following anoxia in the hypolimnion of a eutrophic lake. Aquatic Microbial Ecology, Inter Research, 2009, 54 (1), pp.71-82. 〈10.3354/ame01260〉. 〈hal-00528269〉
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J. R. Dolan, Behzad Mostajir, Télesphore Sime-Ngando. Rassoulzadegan in Villefranche-sur-Mer and the 'evolution' of marine microbial ecology over the last three decades. Aquatic Microbial Ecology, Inter Research, 2009, 57 (3), pp.221-225. 〈10.3354/ame01376〉. 〈hal-00528613〉
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Angia Sriram Pradeep Ram, Marion Sabart, D. Latour, Télesphore Sime-Ngando. Low effect of viruses on bacteria in deep anoxic water and sediment of a productive freshwater reservoir. Aquatic Microbial Ecology, Inter Research, 2009, 55 (3), pp.255-265. 〈hal-00527069〉
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Nicole Morel-Desrosiers. Aquatic chemistry. Chemistry World, Royal Society of Chemistry, 2009, 6 (8), pp.36. 〈hal-00526137〉
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Céline Leroy, Bruno Corbara, Alain Dejean, Régis Céréghino. Potential sources of nitrogen in an ant-garden tank-bromeliad. Plant Signaling and Behavior, Taylor & Francis, 2009, 4 (9), pp.868-870. 〈10.4161/psb.4.9.9423〉. 〈hal-01086786〉
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J. Jabiol, B. Corbara, A. Déjean, R. Céréghino. Structure of aquatic insect communities in tank-bromeliads in a East-Amazonian rainforest in French Guiana. Forest Ecology and Management, Elsevier, 2009, 257, pp.351-360. 〈hal-00350273〉
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Pierre-Yves Pascal, Dupuy Christine, Pierre Richard, Clarisse Mallet, Armynot Du Chatelet E., et al.. Seasonal variation in consumption of benthic bacteria by meio- and macrofauna in an intertidal mudflat. Limnology and Oceanography, Association for the Sciences of Limnology and Oceanography, 2009, pp.1048-1059. 〈hal-00525685〉
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Hélène Masclaux, Alexandre Bec, J. Martin Kainz, Christian Desvilettes, Lionel Jouve, et al.. Combined effects of food quality and temperature on somatic growth and reproduction of two freshwater cladocerans. Limnology and Oceanography, Association for the Sciences of Limnology and Oceanography, 2009, 54 (4), pp.1323-1332. 〈hal-00525522〉
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C. Leroy, B. Corbara, A. Déjean, R. Céréghino. Ants mediate foliar structure and nitrogen acquisition in a tank-bromeliad.. New Phytologist, Wiley, 2009, 183, pp.1124-1133. 〈hal-00480370〉
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Télesphore Sime-Ngando, Jonathan Colombet. Virus et prophages dans les écosystèmes aquatiques. Canadian Journal of Microbiology, NRC Research Press, 2009, 55 (2), pp.95-109. 〈hal-00527381〉
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Anne-Catherine Lehours, Isabelle Batisson, Annie Guedon, Gilles Mailhot, Gérard Fonty. Diversity of culturable bacteria, from the anaerobic zone of the meromictic lake pavin, able to perform dissimilatory-iron reduction in different in vitro conditions. Geomicrobiology Journal, Taylor & Francis, 2009, 26 (3), pp.212-223. 〈hal-00398644〉
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Benjamin Rotenberg, Jean-Pierre Morel, V. Marry, P. Turq, Nicole Morel-Desrosiers. On the driving force of cation exchange in clays: Insights from combined microcalorimetry experiments and molecular simulation. Geochimica et Cosmochimica Acta, Elsevier, 2009, 73, pp.4034. 〈10.1016/j.gca.2009.04.012〉. 〈hal-00391354〉
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Serena Rasconi, Marlène Jobard, Télesphore Sime-Ngando. Fungal parasitism of phytoplankton prokaryotes in the productive Lake Aydat (Massif Central, France). Applied and Environmental Microbiology, American Society for Microbiology, 2009, 75, pp.8. 〈hal-00527118〉
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Sébastien Personnic, Isabelle Domaizon, Télesphore Sime-Ngando, Stéphan Jacquet. Seasonal variations of microbial abundances and virus- vs flagellate-induced mortality of picoplankton in three peri-alpine lakes. Journal of Plankton Research, Oxford University Press (OUP), 2009, 31 (10), pp.1161-1177. 〈hal-00527095〉
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Conference papers

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D. Debroas, Pierre Amato, A.M. Delort, Laurent Deguillaume, S. Raymond, et al.. Etude de l'activité et de la composition des communautés microbiennes dans l'eau non précipitante de la troposphere libre: approches moléculaires. Colloque national Microbiologie des Aérosols, MicrobAERO 2009, Oct 2009, Narbonne, France. 〈hal-00452051〉
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Maud Trotard, Cécile Lepère, Morgane Régeard, Claire Piquet-Pellorce, Dimitri Lavillette, et al.. Involvement of the phosphatidylinositol 4-kinases of type III at the entry and replication stages of the Hepatitis C Virus life cycle. The 34th European Symposium on Hormones and Cell Regulation, Sep 2009, Obernai, France. 〈hal-00676589〉
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Olivier Crouzet, Pascale Besse-Hoggan, Isabelle Batisson, Frédérique Bonnemoy, Jacques Bohatier, et al.. Responses of soil microorganisms to the herbicide mesotrione in microcosm experiments: from whole microbial communities to functional groups. Conference on Pesticide Behaviour in Soils, Water and Air, Sep 2009, York, United Kingdom. 〈hal-00422661〉
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Stéphanie Durand, Olivier Crouzet, Isabelle Batisson, Martine Sancelme, Clarisse Mallet, et al.. Characterization of the mesotrione biodegradation pathway by Bacillus strains - Comparison of soil slurries and batch experiments. Conference on Pesticide Behaviour in Soils, Water and Air, Sep 2009, York, United Kingdom. 〈hal-00422901〉
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Bruno Combourieu, C. Valiente Moro, Isabelle Batisson, D. Latour, Martine Sancelme, et al.. Impact of pesticides on microorganisms: what are the limits of the metabolomic approach ?. SETAC Europe, 18th Annual Meeting, May 2009, Goteborg, Sweden. 〈hal-00387950〉
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Isabelle Batisson, Olivier Crouzet, Pascale Besse-Hoggan, Martine Sancelme, Jean-François Mangot, et al.. Isolation and characterization of mesotrione-degrading bacteria from a French agricultural soil. SETAC Europe, 18th Annual Meeting, May 2009, Goteborg, Sweden. 〈hal-00387966〉
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Olivier Crouzet, Isabelle Batisson, Pascale Besse-Hoggan, Jacques Bohatier, Clarisse Mallet. Réponse des communautés microbiennes du sol aux herbicides : exemple de la mésotrione dans une étude dose-effet en microcosme. XXXIX Congrès du Groupe Français des Pesticides, May 2009, Toulouse, France. 〈hal-00387593〉
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C. Valiente Moro, D. Latour, Jacques Bohatier, Bruno Combourieu. Impact de deux herbicides sur le métabolisme et la physiologie de la cyanobactérie toxique Microcystis aeruginosa. XXXIX Congrès du Groupe Français des Pesticides, May 2009, Toulouse, France. 〈hal-00387864〉
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Book sections

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Jean-François Carrias, Télesphore Sime-Ngando. Bacteria, Attached to Surfaces. Encyclopedia of Inland Waters, Elsevier, pp.182-192, 2009, 〈10.1016/B978-012370626-3.00125-3〉. 〈hal-00528775〉
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Christian Desvilettes, Alexandre Bec. Formation and Transfer of Fatty Acids in Aquatic Microbial Food Webs: Role of Heterotrophic Protists. Formation and Transfer of Fatty Acids in Aquatic Microbial Food Webs: Role of Heterotrophic Protists, Springer, pp.25-42, 2009. 〈hal-00525519〉
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Other publications

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Isabelle Batisson, Jacques Bohatier, Jean-Louis Bonnet, Frédérique Bonnemoy, Pascale Besse-Hoggan, et al.. Les xénobiotiques : devenir et impact dans l'environnement. Chapitre de la Revue d'Auvergne "L'environnement : un pôle de compétences en Auvergne", Volume .. 2009, pp.39-54. 〈hal-00450060〉
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Poster communications

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Sylvie Nelieu, Francois Perreau, Frédérique Bonnemoy, Jacques Bohatier, Didier Azam, et al.. Sunlight nitrate-induced photodegradation of chlorotoluron: evidence of the process in aquatic mesocosms. Symposium on Toxicity Assessment ISTA 14, Aug 2009, Metz, France. 2009. 〈hal-01203987〉
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Reports

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Christophe Gouinaud, David Hill, Pierre Peyret, Loïc Yon. Finding spot shape in cdna microarray by using a deformable grid and a Markov segmentation. 2009. 〈hal-00678560〉
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Theses

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Aurélie Descroix. Croissance et régime alimentaire des juvéniles de Saumon atlantique (Salmo salar L.) dans la rivière Allier. Biodiversité et Ecologie. Université Blaise Pascal - Clermont-Ferrand II, 2009. Français. 〈NNT : 2009CLF21950〉. 〈tel-00725306〉
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2008

Journal articles

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Roger Frutos, Hubert Denise, Christian Vivarès, Jean-Marc Neuhaus, Sandro Vitale, et al.. Pharmaceutical proteins in plants. A strategic genetic engineering approach for the production of tuberculosis antigens.. Annals of the New York Academy of Sciences, Wiley, 2008, 1149, pp.275-80. 〈10.1196/annals.1428.089〉. 〈hal-00529956〉
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Jean-Louis Bonnet, Frédérique Bonnemoy, M. Dusser, Jacques Bohatier. Toxicity assessment of the herbicides sulcotrione and mesotrione toward two reference environmental microorganisms: Tetrahymena pyriformis and Vibrio fischeri.. Archives of Environmental Contamination and Toxicology, Springer Verlag, 2008, 55 (4), pp.576-83. 〈10.1007/s00244-008-9145-2〉. 〈hal-00528107〉
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Ivan Wawrzyniak, Michaël Roussel, Marie Diogon, Arnaud Couloux, Catherine Texier, et al.. Complete circular DNA in the mitochondria-like organelles of Blastocystis hominis.. International Journal for Parasitology, Elsevier, 2008, 38 (12), pp.1377-1382. 〈10.1016/j.ijpara.2008.06.001〉. 〈hal-00527813〉
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Philippe Roingeard, Christophe Hourioux, Emmanuelle Blanchard, Gérard Prensier. Hepatitis C virus budding at lipid droplet-associated ER membrane visualized by 3D electron microscopy.. Histochemie / Histochemistry Histochimie, 2008, 130 (3), pp.561-6. 〈10.1007/s00418-008-0447-2〉. 〈inserm-00285203〉
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A. Arraj, Jacques Bohatier, Claire Aumeran, Jean-Luc Bailly, H. Laveran, et al.. An epidemiological study of enteric viruses in sewage with molecular characterization by RT-PCR and sequence analysis.. Journal of Water and Health, IWA Publishing, 2008, 6 (3), pp.351-8. 〈hal-00528321〉
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Isabelle Mary, Laurence Garczarek, Glen A Tarran, Christian Kolowrat, Matthew J Terry, et al.. Diel rhythmicity in amino acid uptake by Prochlorococcus.. Environmental Microbiology, Wiley-Blackwell, 2008, 10 (8), pp.2124-31. 〈10.1111/j.1462-2920.2008.01633.x〉. 〈hal-00528824〉
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Apostolos-Manuel Koussoroplis, Charles Lemarchand, Alexandre Bec, Christian Desvilettes, Christian Amblard, et al.. From aquatic to terrestrial food webs: decrease of the docosahexaenoic acid/linoleic acid ratio.. Lipids, Springer Verlag, 2008, 43 (5), pp.461-6. 〈10.1007/s11745-008-3166-5〉. 〈hal-00525871〉
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Angia Sriram Pradeep Ram, Télesphore Sime-Ngando. Functional responses of prokaryotes and viruses to grazer effects and nutrient additions in freshwater microcosms. ISME Journal, Nature Publishing Group, 2008, 2 (5), pp.498-509. 〈10.1038/ismej.2008.15〉. 〈hal-00526575〉
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Cécile Lepère, Isabelle Domaizon, Didier Debroas. Unexpected importance of potential parasites in the composition of the freshwater small-eukaryote community. Applied and Environmental Microbiology, American Society for Microbiology, 2008, 74 (10), pp.2940-9. 〈10.1128/AEM.01156-07〉. 〈hal-00528208〉
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Abdel Belkorchia, Corinne Biderre, Cécile Militon, Valérie Polonais, Patrick Wincker, et al.. In vitro propagation of the microsporidian pathogen Brachiola algerae and studies of its chromosome and ribosomal DNA organization in the context of the complete genome sequencing project. Parasitology International, Elsevier, 2008, 57 (1), pp.62-71. 〈10.1016/j.parint.2007.09.002〉. 〈hal-00529592〉
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P. Lepage, J. Colombet, P. Marteau, Télesphore Sime-Ngando, J. Doré, et al.. Dysbiosis in inflammatory bowel disease: a role for bacteriophages?. Gut, BMJ Publishing Group, 2008, 57 (3), pp.424-5. 〈10.1136/gut.2007.134668〉. 〈hal-00526557〉
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Stéphane Pesce, Céline Fajon, Corinne Bardot, Frédérique Bonnemoy, Christophe Portelli, et al.. Longitudinal changes in microbial planktonic communities of a French river in relation to pesticide and nutrient inputs.. Aquatic Toxicology, Elsevier, 2008, 86 (3), pp.352-60. 〈10.1016/j.aquatox.2007.11.016〉. 〈hal-00528323〉
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Muriel Mazet, Marie Diogon, John F Alderete, Christian Vivarès, Frédéric Delbac. First molecular characterisation of hydrogenosomes in the protozoan parasite Histomonas meleagridis.. International Journal for Parasitology, Elsevier, 2008, 38 (2), pp.177-90. 〈10.1016/j.ijpara.2007.06.006〉. 〈hal-00527816〉
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Pierre Larmande, Céline Gay, Mathias Lorieux, Christophe Périn, Matthieu Bouniol, et al.. Oryza Tag Line, a phenotypic mutant database for the Genoplante rice insertion line library. Nucleic Acids Research, Oxford University Press, 2008, 36 (Database issue), pp.D1022-7. 〈10.1093/nar/gkm762〉. 〈hal-00464031〉
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Isabelle Mary, Glen A Tarran, Phillip E Warwick, Matthew J Terry, David J Scanlan, et al.. Light enhanced amino acid uptake by dominant bacterioplankton groups in surface waters of the Atlantic Ocean.. FEMS Microbiology Ecology, Wiley-Blackwell, 2008, 63 (1), pp.36-45. 〈10.1111/j.1574-6941.2007.00414.x〉. 〈hal-00528826〉
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Mohieddine Missaoui, David Hill, Pierre Peyret. A comparison of algorithms for a complete backtranslation of oligopeptides. Int J Comput Biol Drug Des, 2008, 1 (1), pp.26-38. 〈hal-00529597〉
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Felicity Vear, F. Serre, Isabelle Jouan-Dufournel, Pierre-François Bert, S. Roche, et al.. Inheritance of quantitative resistance to downy mildew (Plasmopara halstedii) in sunflower (Helianthus annuus L.). Euphytica, 2008, 164 (2), pp.561-570. 〈hal-00528103〉
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Emilie Lefèvre, Balbine Roussel, Christian Amblard, Télesphore Sime-Ngando. The molecular diversity of freshwater picoeukaryotes reveals high occurrence of putative parasitoids in the plankton. PLoS ONE, Public Library of Science, 2008, 3 (6), pp.e2324. 〈10.1371/journal.pone.0002324〉. 〈hal-00526223〉
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Julien Pisson, Jean-Pierre Morel, Nicole Morel-Desrosiers, Christine Taviot-Gueho, Patrice Malfreyt. Molecular modeling of the structure and dynamics of the interlayer species of ZnAlCl layered double hydroxide.. Journal of Physical Chemistry B, American Chemical Society, 2008, 112, pp.7856-7864. 〈hal-00315489〉
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Pierre-Yves Pascal, Dupuy Christine, Clarisse Mallet, Pierre Richard, Nathalie Niquil. Bacterivory by benthic organisms in sediment: quantification using 15N-enriched bacteria. Journal of Experimental Marine Biology and Ecology, Elsevier, 2008, 355 (1), pp.18-26. 〈hal-00530026〉
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Pierre-Yves Pascal, Dupuy Christine, Clarisse Mallet, Pierre Richard, Nathalie Niquil. Bacterivory by benthic organisms in sediment: quantification using 15N enriched bacteria. Journal of Experimental Marine Biology and Ecology, Elsevier, 2008, pp.18-26. 〈10.1016/j.jembe.2007.11.012〉. 〈hal-00293538〉
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M. Zubkov, G. A. Tarran, Isabelle Mary, B.M. Fuchs. Differential microbial uptake of dissolved amino acids and amino sugars in surface waters of the Atlantic Ocean. Journal of Plankton Research, Oxford University Press (OUP), 2008, 30, pp.211-220. 〈hal-00528831〉
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J. C. Vardamides, Hicham El Alaoui, D. L. Massoma, A. G. B. Azebaze, B. Ndemangou, et al.. Anticoccidial constituents from the stem bark of Turraeanthus africanus. Chemistry of Natural Compounds, Springer Verlag, 2008, 44 (6), pp.696-700. 〈hal-00529781〉
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Yvan Bettarel, Robert Arfi, Thierry Bouvier, Marc Bouvy, Briand Enora, et al.. Virioplankton distribution and activity in a tropical eutrophicated bay. Estuarine, Coastal and Shelf Science, Elsevier, 2008, 80 (3), pp.425-429. 〈hal-00526253〉
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Franck H. Gleason, Maiko Kagami, Emilie Lefèvre, Télesphore Sime-Ngando. The ecology of chytrids in aquatic ecosystems: roles in food web dynamics. Fungal Biology Reviews, Elsevier, 2008, 22 (1), pp.17-25. 〈10.1016/j.fbr.2008.02.001〉. 〈hal-00527383〉
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Anne Desnues, Maïmouna Cissoko, Marc Bouvy, Télesphore Sime-Ngando, Emma Verling, et al.. Effects of freshwater and seawater mixing on virio- and bacterioplankton in a tropical estuary. Freshwater Biology, Wiley, 2008, 53 (6), pp.1154-1162. 〈hal-00526248〉
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Stéphane Pesce, Corinne Bardot, Anne-Catherine Lehours, Isabelle Batisson, Jacques Bohatier, et al.. Effects of diuron in microcosms on natural riverine bacterial community composition : new insight into phylogenetic approaches using PCR-TTGE analysis. Aquatic Sciences - Research Across Boundaries, Springer Verlag, 2008, 70 (4), pp.410-418. 〈hal-00528265〉
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Claire Valiente Moro, Jean Thioulouse, Claude Chauve, Philippe Normand, Lionel Zenner. Bacterial taxa associated with the hematophagous mite Dermanyssus gallinae detected by 16S rRNA PCR amplification and TTGE fingerprinting. Research in Microbiology, Elsevier, 2008, pp.1-8. 〈10.1016/j.resmic.2008.10.006〉. 〈halsde-00354551〉
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Télesphore Sime-Ngando, J. Colombet, Sébastien Personnic, Isabelle Domaizon, Ursula Dorigo, et al.. Short-term variations in abundances and potential activities of viruses, bacteria and nanoprotists in Lake Bourget. Ecological Research, Ecological Society of Japan, 2008, 23 (5), pp.851-861. 〈10.1007/s11284-007-0448-y〉. 〈hal-00525993〉
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Conference papers

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O. Crouzet, Pascale Besse-Hoggan, Frédérique Bonnemoy, Jacques Bohatier, Clarisse Mallet. Impact of the herbicide mesotrione on the microbial processes of the nitrogen cycle in an agricultural soil (Limagne, France). Congrès Interdisciplinaire "Interactions entre les processus physico-chimiques et microbiologiques dans l'environnement", Oct 2008, AUBIERE, France. 〈hal-00331929〉
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O. Crouzet, Pascale Besse-Hoggan, Bruno Combourieu, Frédérique Bonnemoy, C. Bardot, et al.. A microcosm approach to evaluate the mesotrione effects on microbial communities of an agricultural soil (Limagne, France). 1st Congress of the Federation for Environment Research, "Interactions between physico-chemical and microbiological processes in the environment", Oct 2008, Clermont-Ferrand, France. 〈hal-00352387〉
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Isabelle Batisson, O. Crouzet, Pascale Besse-Hoggan, Martine Sancelme, J. F. Mangot, et al.. Isolation and characterization of mesotrione-degrading bacteria from a french agricultural soil. 1st Congress of the Federation for Environment Research, "Interactions between physico-chemical and microbiological processes in the environment", Oct 2008, Clermont-Ferrand, France. 〈hal-00352386〉
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C. Valiente Moro, D. Latour, Jacques Bohatier, Bruno Combourieu. Impact of two herbicides on cyanobacteria metabolism : a combined physiological and metabolomic study. 1st Congress of the Federation for Environment Research, "Interactions between physico-chemical and microbiological processes in the environment", Oct 2008, Clermont-Ferrand, France. 〈hal-00352590〉
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Stéphanie Durand, T. Charbouillot, O. Crouzet, Isabelle Batisson, Martine Sancelme, et al.. Biodegradation of the herbicide mesotrione in soil from batch to microcosm experiments. Congrès Interdisciplinaire "Interactions entre les processus physico-chimiques et microbiologiques dans l'environnement", Oct 2008, AUBIERE, France. 〈hal-00331949〉
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Adeline A. J. Wall, Michel Magny, Jean-François Carrias, Daniel Gilbert. Distribution des amibes à thèque dans 3 lacs français.. 7ème CILO - Congrès International de Limnologie-Océanographie, Oct 2008, Rouen, France. 〈hal-00432655〉
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Isabelle Batisson, Stéphane Pesce, Pascale Besse-Hoggan, Martine Sancelme, Jacques Bohatier. Diversity analysis, isolation and characterization of diuron-degrading bacteria from lotic surface water. SETAC Europe, 18th Annual Meeting, May 2008, Varsovie, Poland. 〈hal-00345705〉
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Book sections

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Cécile Militon, Corinne Biderre, Pierre Peyret. New tools for isolation and identification of micro-organisms.. Ashok Pandey, Christian Larroche, Carlos Ricardo Soccol and Claude-Gilles Dussap. Advances in Fermentation Technology, Asiatech Publishers, Inc., New Delhi, 672 p., ISBN 8187680180, 2008. 〈hal-00704709〉
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Poster communications

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Olivier Crouzet, Isabelle Batisson, Pascale Besse-Hoggan, Jacques Bohatier, Clarisse Mallet. Réponse des communautés microbiennes du sol aux herbicides: exemple de la mésotrione dans une étude dose-effet en microcosme. XXXIXème congrès du Groupe Français des Pesticides, May 2008, Toulouse, France. 2008. 〈hal-01628845〉
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Theses

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Raghida Damaj. Squelette membranaire chez Paramecium Tetraurelia : analyse structurale et fonctionnelle de la famille multigénique des épiplasmines. Biologie cellulaire. Université Blaise Pascal - Clermont-Ferrand II, 2008. Français. 〈NNT : 2008CLF21869〉. 〈tel-00731002〉
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Jonathan Colombet. Importance de la variabilité verticale dans un lac méromictique profond: diversité et activité lysogène des communautés virales. Biodiversité et Ecologie. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2008. Français. 〈tel-00730192〉
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2007

Journal articles

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J. Colombet, A. Robin, L. Lavie, Y. Bettarel, H. M. Cauchie, et al.. Virioplankton 'pegylation': use of PEG (polyethylene glycol) to concentrate and purify viruses in pelagic ecosystems. Journal of Microbiological Methods, Elsevier, 2007, 71 (3), pp.212-9. 〈10.1016/j.mimet.2007.08.012〉. 〈hal-00525979〉
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Thomas Lautier, Nicolas Blot, Georgi Muskhelishvili, William Nasser. Integration of two essential virulence modulating signals at the Erwinia chrysanthemi pel gene promoters: a role for Fis in the growth-phase regulation.. Molecular Microbiology, Wiley, 2007, 66 (6), pp.1491-505. 〈10.1111/j.1365-2958.2007.06010.x〉. 〈hal-00529444〉
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Catherine Neuwirth, Eliane Siebor, Frederic Robin, Richard Bonnet. First occurrence of an IMP metallo-beta-lactamase in Aeromonas caviae: IMP-19 in an isolate from France.. Antimicrobial Agents and Chemotherapy, American Society for Microbiology, 2007, 51 (12), pp.4486-8. 〈10.1128/AAC.01462-06〉. 〈hal-00515789〉
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Isabelle Batisson, Stéphane Pesce, Pascale Besse-Hoggan, Martine Sancelme, Jacques Bohatier. Isolation and characterization of diuron-degrading bacteria from lotic surface water.. Microbial Ecology, Springer Verlag, 2007, 54 (4), pp.761-70. 〈10.1007/s00248-007-9241-2〉. 〈hal-00528314〉
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Cécile Militon, Sébastien Rimour, Mohieddine Missaoui, Corinne Biderre, Vincent Barra, et al.. PhylArray: phylogenetic probe design algorithm for microarray. Bioinformatics, Oxford University Press (OUP), 2007, 23 (19), pp.2550 - 2557. 〈10.1093/bioinformatics/btm392〉. 〈hal-01621791〉
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Cécile Militon, Sébastien Rimour, Mohieddine Missaoui, Corinne Biderre, Vincent Barra, et al.. PhylArray: phylogenetic probe design algorithm for microarray. Bioinformatics, Oxford University Press (OUP), 2007, 23 (19), pp.2550-7. 〈10.1093/bioinformatics/btm392〉. 〈hal-00461398〉
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S. J. Grésoviac, D. V. Baxa, Christian Vivarès, R. P. Hedrick. Detection of the intranuclear microsporidium Nucleospora salmonis in naturally and experimentally exposed Chinook salmon Oncorhynchus tshawytscha by in situ hybridization.. Parasitology Research / Journal of Parasitology, 2007, 101 (5), pp.1257-64. 〈10.1007/s00436-007-0631-7〉. 〈hal-00529939〉
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Cécile Lepère, Isabelle Domaizon, Didier Debroas. Community composition of lacustrine small eukaryotes in hyper-eutrophic conditions in relation to top-down and bottom-up factors. FEMS Microbiology Ecology, Wiley-Blackwell, 2007, 61 (3), pp.483-95. 〈10.1111/j.1574-6941.2007.00359.x〉. 〈hal-00528205〉
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M. Zubkov, Isabelle Mary, E. Malcolm S. Woodward, Phillip E. Warwick, Bernhard M. Fuchs, et al.. Microbial control of phosphate in the nutrient-depleted North Atlantic subtropical gyre. Environmental Microbiology, Wiley-Blackwell, 2007, 9 (8), pp.2079-2089. 〈hal-00528815〉
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Anne-Hélène Le Jeune, Marie Charpin, Denis Sargos, Jean-François Lenain, Véronique Deluchat, et al.. Planktonic microbial community responses to added copper. Aquatic Toxicology, Elsevier, 2007, 83 (3), pp.223-37. 〈10.1016/j.aquatox.2007.04.007〉. 〈hal-00530307〉
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Geneviève Bricheux, Gérard Coffe, Guy Brugerolle. Identification of a new protein in the centrosome-like "atractophore" of Trichomonas vaginalis.. Molecular and Biochemical Parasitology, Elsevier, 2007, 153 (2), pp.133-40. 〈10.1016/j.molbiopara.2007.02.011〉. 〈hal-00526075〉
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Christophe Romier, Nicole James, Catherine Birck, Jean Cavarelli, Christian Vivarès, et al.. Crystal structure, biochemical and genetic characterization of yeast and E. cuniculi TAF(II)5 N-terminal domain: implications for TFIID assembly.. Journal of Molecular Biology, Elsevier, 2007, 368 (5), pp.1292-306. 〈10.1016/j.jmb.2007.02.039〉. 〈hal-00166258〉
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Jian-Yang Wang, Christophe Chambon, Chang-De Lu, Ke-Wei Huang, Christian Vivarès, et al.. A proteomic-based approach for the characterization of some major structural proteins involved in host-parasite relationships from the silkworm parasite Nosema bombycis (Microsporidia).. Proteomics, Wiley-VCH Verlag, 2007, 7 (9), pp.1461-72. 〈10.1002/pmic.200600825〉. 〈hal-00529952〉
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Marine Frezza, Laurent Soulère, Damien Balestrino, Michel Gohar, Christian Deshayes, et al.. Ac2-DPD, the bis-(O)-acetylated derivative of 4,5-dihydroxy-2,3-pentanedione (DPD) is a convenient stable precursor of bacterial quorum sensing autoinducer AI-2.. Bioorganic and Medicinal Chemistry Letters, Elsevier, 2007, 17 (5), pp.1428-31. 〈10.1016/j.bmcl.2006.11.076〉. 〈hal-00164190〉
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Ndongo Dia, Laurence Lavie, Guy Méténier, Bhen S Toguebaye, Christian Vivarès, et al.. InterB multigenic family, a gene repertoire associated with subterminal chromosome regions of Encephalitozoon cuniculi and conserved in several human-infecting microsporidian species.. Current Genetics, Springer Verlag, 2007, 51 (3), pp.171-86. 〈10.1007/s00294-006-0114-x〉. 〈hal-00529935〉
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Anne-Catherine Lehours, Paul Evans, Corinne Bardot, Keith Joblin, Gérard Fonty. Phylogenetic diversity of archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France).. Applied and Environmental Microbiology, American Society for Microbiology, 2007, 73 (6), pp.2016-9. 〈10.1128/AEM.01490-06〉. 〈hal-00528262〉
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Jean-Philippe Lavigne, Hélène Marchandin, Julien Delmas, Jérôme Moreau, Nicole Bouziges, et al.. CTX-M beta-lactamase-producing Escherichia coli in French hospitals: prevalence, molecular epidemiology, and risk factors.. Journal of Clinical Microbiology, American Society for Microbiology, 2007, 45 (2), pp.620-6. 〈10.1128/JCM.01917-06〉. 〈inserm-00175318〉
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Xueyuan Cao, Liliana M Costa, Corinne Biderre-Petit, Bouchab Kbhaya, Nrisingha Dey, et al.. Abscisic acid and stress signals induce Viviparous1 expression in seed and vegetative tissues of maize.. Plant Physiology, American Society of Plant Biologists, 2007, 143 (2), pp.720-31. 〈10.1104/pp.106.091454〉. 〈hal-00529933〉
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Vanessa Taupin, Estelle Garénaux, Muriel Mazet, Emmanuel Maes, Hubert Denise, et al.. Major O-glycans in the spores of two microsporidian parasites are represented by unbranched manno-oligosaccharides containing a-1,2 linkages. Glycobiology, Oxford University Press (OUP), 2007, 17 (1), pp.56-67. 〈hal-00124090〉
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Emilie Lefèvre, Corinne Bardot, Christophe Noël, Jean-François Carrias, Eric Viscogliosi, et al.. Unveiling fungal zooflagellates as members of freshwater picoeukaryotes: evidence from a molecular diversity study in a deep meromictic lake. Environmental Microbiology, Wiley-Blackwell, 2007, 9 (1), pp.61-71. 〈10.1111/j.1462-2920.2006.01111.x〉. 〈hal-00527067〉
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Vanessa Taupin, Estelle Garenaux, Muriel Mazet, Emmanuel Maes, Hubert Denise, et al.. Major O-glycans in the spores of two microsporidian parasites are represented by unbranched manno-oligosaccharides containing alpha-1,2 linkages.. Glycobiology, Oxford University Press (OUP), 2007, 17 (1), pp.56-67. 〈10.1093/glycob/cwl050〉. 〈hal-00529950〉
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Diego Miranda-Saavedra, Michael Stark, Jeremy Packer, Christian Vivarès, Christian Doerig, et al.. The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe. BMC Genomics, BioMed Central, 2007, 8, pp.309. 〈10.1186/1471-2164-8-309〉. 〈hal-00530096〉
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Kim-Anh Lê Cao, Olivier Gonçalves, Philippe Besse, Sébastien Gadat. Selection of biologically relevant genes with a wrapper stochastic algorithm. Statistical Applications in Genetics and Molecular Biology, De Gruyter, 2007, 6, pp.Article29. 〈10.2202/1544-6115.1312〉. 〈hal-00463891〉
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Jean-Louis Bonnet, Frédérique Bonnemoy, M. Dusser, Jacques Bohatier. Assessment of the potential toxicity of herbicides and their degradation products to nontarget cells using two microorganisms, the bacteria Vibrio fischeri and the ciliate Tetrahymena pyriformis. Environmental Toxicology, Wiley, 2007, 22 (1), pp.78-91. 〈hal-00528105〉
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Delphine Latour, Mj Salençon, Jean-Louis Reyss, Hervé Giraudet. Sedimentary imprint of Microcystis Aeruginosa (Cyanobacteria) blooms in grangent reservoir (Loire, FRANCE). Journal of Phycology, Wiley, 2007, 43 (3), pp.417-425. 〈hal-00526271〉
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Christophe Six, Jean-Claude Thomas, Laurence Garczarek, Martin Ostrowski, Alexis Dufresne, et al.. Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study. Genome Biology, BioMed Central, 2007, 8 (12), pp.R259. 〈10.1186/gb-2007-8-12-r259〉. 〈hal-00338622〉
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B. Alaoui Mhamdi, A. Azzouzi, M. Alaoui Mhamdi, Télesphore Sime-Ngando. Dynamics of the relative nitrogen and phosphorus concentrations in a reservoir situated in a semi-arid zone (Sahela, Morocco). Water Resources Management, Springer Verlag, 2007, 21 (6), pp.983-995. 〈hal-00525953〉
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Louis-B Jugnia, Télesphore Sime-Ngando, J. Devaux. Relationship between bacterial and primary production in a newly filled reservoir: temporal variability over 2 consecutive years. Ecological Research, Ecological Society of Japan, 2007, 22 (2), pp.321-330. 〈10.1007/s11284-006-0023-y〉. 〈hal-00525960〉
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Anne-Hélène Le Jeune, Marie Charpin, Denis Sargos, Jean-François Lenain, Véronique Deluchat, et al.. Planktonic microbial community responses to added copper. Aquatic Toxicology, Elsevier, 2007, 83, pp.223-237. 〈10.1016/j.aquatox.2007.04.007〉. 〈hal-00931141〉
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Stéphan Jacquet, Isabelle Domaizon, Sébastien Personnic, Télesphore Sime-Ngando. Do small grazers influence virus-induced mortality of bacteria in Lake Bourget (France)?. Fundamental and Applied Limnology, E Schweizerbart Science Publishers, 2007, 170 (2), pp.125-132. 〈hal-00525972〉
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Conference papers

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Mohieddine Missaoui, David Hill, Cécile Militon, Pierre Peyret. Complete backtranslation of oligopeptides for metabolic pathways exploration of complex environments using functional microarrays. 7th IEEE International Conference on Bioinformatics and Bioengineering, Oct 2007, Boston (MA), France. IEEE SERVICE CENTER, 445 HOES LANE, PO BOX 1331, PISCATAWAY, NJ 08855-1331 USA, pp.1275-1279, 2007. 〈hal-00704699〉
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Olivier Crouzet, Isabelle Batisson, Pascale Besse-Hoggan, Bruno Combourieu. Effets perturbateurs de la mésotrione sur le fonctionnement et la structure des communautés microbiennes d’un sol de Limagne. IIIème congrès AFEM, 2007, La Grande Motte, France. 2007. 〈hal-01606256〉
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Olivier Crouzet, Isabelle Batisson, Pascale Besse-Hoggan, Bruno Combourieu. Effet de la mésotrione (herbicide) sur le fonctionnement et la structure des communautés microbiennes du sol. VIIème congrès national de la SFM, 2007, Nantes, France. 2007. 〈hal-01606259〉
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Jarosław Wiszniowski, Olivier Crouzet, Isabelle Batisson, Pascale Besse-Hoggan, Bruno Combourieu, et al.. Impact de la mesotrione sur les communautés Chlorophyliennes d’un sol agricole de Limagne. IIIème congrès AFEM, 2007, La Grande Motte, France. 2007. 〈hal-01604221〉
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Patents

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Christian Vivarès, Hicham El Alaoui. Use of Microalgae for the treatment and/or prevention of parasitary infections. Patent n° : EP1745794. 2007. 〈hal-00529794〉
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Reports

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Mohieddine Missaoui, David Hill, Pierre Peyret. DegenRev: Degeneracy-Based Full Backtranslation Algorithm for Oligopeptide. 2007. 〈hal-00678339〉
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Theses

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Cécile Militon. Caractérisation des communautés procaryotiques impliquées dans la bioremédiation d'un sol pollué par des hydrocarbures et développement d'outils d'analyse à haut débit. Protistologie. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2007. Français. 〈NNT : 2007CLF21810〉. 〈tel-00718551〉
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Sarah Lambert-Langlais. Fonctions physiologiques des aldoses réductases dans la glande surrénale. Génétique. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2007. Français. 〈NNT : 2007CLF21804〉. 〈tel-00718601〉
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Kevin Mouzat. Etude du rôle des récepteurs nucléaires des oxystérols LXR alpha et LXR bêta dans la physiologie de la reproduction chez la souris femelle. Reproduction sexuée. Université Blaise Pascal - Clermont-Ferrand II, 2007. Français. 〈NNT : 2007CLF21802〉. 〈tel-00926323〉
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Sophie Fleurdépine. Caractérisation de la fonction "La" chez Arabidopsis thaliana et identification d'une structure conservée pour les ARN non-codants de type SINE. Génétique. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2007. Français. 〈NNT : 2007CLF21791〉. 〈tel-00718377〉
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Muriel Mazet. Culture in vitro et caractérisation d'enzymes hydrogénosomales chez Histomonas meleagridis, protozoaire flagellé parasite de gallinacés. Microbiologie et Parasitologie. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2007. Français. 〈NNT : 2007CLF21568〉. 〈tel-00718217〉
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Abdel Belkorchia. Evolution des génomes microsporidiens et mécanisme d'adaptation moléculaire chez les parasites intracellulaires obligatoires. Biochimie, Biologie Moléculaire. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2007. Français. 〈NNT : 2007CLF21766〉. 〈tel-00718201〉
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Gwendoline Christophe. Etude de Fibrobacter succinogenes en bioréacteur anaérobie en vue de la dégradation de déchets végétaux. Microbiologie et Parasitologie. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2007. Français. 〈NNT : 2007CLF21761〉. 〈tel-00718166〉
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Charles Lemarchand. Etude de l'habitat de la loutre d'Europe (Lutra lutra) en région Auvergne (France) [Texte imprimé] : relations entre le régime alimentaire et la dynamique de composés essentiels et d'éléments toxiques. Biologie animale. Université Blaise Pascal - Clermont-Ferrand II, 2007. Français. 〈NNT : 2007CLF21746〉. 〈tel-00717841〉
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Marjorie Saubusse. Effet de barrière des populations microbiennes des laits crus vis-à-vis de Listeria monocytogenes dans un fromage à pâte pressée non cuite. Biochimie, Biologie Moléculaire. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2007. Français. 〈NNT : 2007CLF21741〉. 〈tel-00717826〉
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Jian-Yang Wang. Interactions microsporidies-insectes in vivo : dissémination de Nosema bombycis (Microsporidia) dans son hôte Bombyx mori (Lepidoptera) et caractérisation de protéines structurales majeures de N. bombycis impliquées dans l'invasion. Biochimie, Biologie Moléculaire. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2007. Français. 〈NNT : 2007CLF21736〉. 〈tel-00717814〉
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Sébastien Delgoulet. Facteurs de contrôle de l'activité et de la diversité du bactérioplancton dans des réservoirs de différents niveaux trophiques. Biochimie, Biologie Moléculaire. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2007. Français. 〈NNT : 2007CLF21733〉. 〈tel-00717766〉
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2006

Journal articles

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Anne-Hélène Le Jeune, Marie Charpin, Véronique Deluchat, Jean-François Briand, Jean-François Lenain, et al.. Effect of copper sulphate treatment on natural phytoplanktonic communities.. Aquatic Toxicology, Elsevier, 2006, 80 (3), pp.267-80. 〈10.1016/j.aquatox.2006.09.004〉. 〈hal-00530306〉
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Sébastien Personnic, Solange Duhamel, Yvan Bettarel, Télesphore Sime-Ngando, Stéphan Jacquet. Les virus planctoniques : un compartiment biologique clé des milieux aquatiques. Le Courrier de l'environnement de l'INRA, Paris : Institut national de la recherche agronomique Délégation permanente à l'environnement, 2006, 53 (53), pp.19-34. 〈hal-01199195〉
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Vanessa Taupin, Guy Méténier, Christian Vivarès, Gérard Prensier. An improved procedure for Percoll gradient separation of sporogonial stages in Encephalitozoon cuniculi (Microsporidia).. Parasitology Research / Journal of Parasitology, 2006, 99 (6), pp.708-14. 〈10.1007/s00436-006-0231-y〉. 〈hal-00529932〉
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Dominik Martin-Creuzburg, Alexandre Bec, Eric Von Elert. Supplementation with sterols improves food quality of a ciliate for Daphnia magna.. Protist, Elsevier, 2006, 157 (4), pp.477-86. 〈10.1016/j.protis.2006.07.001〉. 〈hal-00525868〉
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Delphine Boucher, Mathilde Richardot, Aurélie Thénot, Didier Debroas. Incorporation of 3H-thymidine by different prokaryotic groups in relation to temperature and nutrients in a lacustrine ecosystem. Microbial Ecology, Springer Verlag, 2006, 52 (3), pp.399-407. 〈10.1007/s00248-006-9074-4〉. 〈hal-00528195〉
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Louis-B Jugnia, Télesphore Sime-Ngando, Daniel Gilbert. Dynamics and estimates of growth and loss rates of bacterioplankton in a temperate freshwater system. FEMS Microbiology Ecology, Wiley-Blackwell, 2006, 58 (1), pp.23-32. 〈10.1111/j.1574-6941.2006.00145.x〉. 〈hal-00525947〉
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Charles Lemarchand, Ludwig Jardillier, Jean-François Carrias, Mathilde Richardot, Didier Debroas, et al.. Community composition and activity of prokaryotes associated to detrital particles in two contrasting lake ecosystems.. FEMS Microbiology Ecology, Wiley-Blackwell, 2006, 57 (3), pp.442-51. 〈10.1111/j.1574-6941.2006.00131.x〉. 〈hal-00527083〉
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Yvan Bettarel, Marc Bouvy, Claire Dumont, Télesphore Sime-Ngando. Virus-bacterium interactions in water and sediment of West African inland aquatic systems. Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72 (8), pp.5274-82. 〈10.1128/AEM.00863-06〉. 〈hal-00525946〉
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Stéphane Pesce, Céline Fajon, Corinne Bardot, Frédérique Bonnemoy, Christophe Portelli, et al.. Effects of the phenylurea herbicide diuron on natural riverine microbial communities in an experimental study.. Aquatic Toxicology, Elsevier, 2006, 78 (4), pp.303-14. 〈10.1016/j.aquatox.2006.03.006〉. 〈hal-00528297〉
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Nicolas Blot, Ramesh Mavathur, Marcel Geertz, Andrew Travers, Georgi Muskhelishvili. Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome.. EMBO Reports, EMBO Press, 2006, 7 (7), pp.710-5. 〈10.1038/sj.embor.7400729〉. 〈hal-00529439〉
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Manuela Filippini, Nanna Buesing, Yvan Bettarel, Télesphore Sime-Ngando, Mark O Gessner. Infection paradox: high abundance but low impact of freshwater benthic viruses. Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72 (7), pp.4893-8. 〈10.1128/AEM.00319-06〉. 〈hal-00525900〉
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V. Taupin, G. Méténier, Frédéric Delbac, Christian Vivarès, G. Prensier. Expression of two cell wall proteins during the intracellular development of Encephalitozoon cuniculi: an immunocytochemical and in situ hybridization study with ultrathin frozen sections.. Parasitology, Cambridge University Press (CUP), 2006, 132 (Pt 6), pp.815-825. 〈10.1017/S0031182005009777〉. 〈hal-00527177〉
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Damien Brosson, Lauriane Kuhn, Frédéric Delbac, Jérôme Garin, Christian Vivarès, et al.. Proteomic analysis of the eukaryotic parasite Encephalitozoon cuniculi (microsporidia): a reference map for proteins expressed in late sporogonial stages.. Proteomics, Wiley-VCH Verlag, 2006, 6 (12), pp.3625-35. 〈10.1002/pmic.200500796〉. 〈hal-00527166〉
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J. Colombet, Télesphore Sime-Ngando, H. M. Cauchie, G. Fonty, L. Hoffmann, et al.. Depth-related gradients of viral activity in Lake Pavin. Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72 (6), pp.4440-5. 〈10.1128/AEM.00021-06〉. 〈hal-00525893〉
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Francis Girard, Isabelle Batisson, Gabriela Martinez, Cynthia Breton, Josée Harel, et al.. Use of virulence factor-specific egg yolk-derived immunoglobulins as a promising alternative to antibiotics for prevention of attaching and effacing Escherichia coli infections.. FEMS Immunology & Medical Microbiology, 2006, 46 (3), pp.340-50. 〈10.1111/j.1574-695X.2005.00030.x〉. 〈hal-00529354〉
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Cécile Lepère, Delphine Boucher, Ludwig Jardillier, Isabelle Domaizon, Didier Debroas. Succession and regulation factors of small eukaryote community composition in a lacustrine ecosystem (Lake Pavin). Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72 (4), pp.2971-81. 〈10.1128/AEM.72.4.2971-2981.2006〉. 〈hal-00528203〉
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Isabelle Peuvel-Fanget, Valérie Polonais, Damien Brosson, Catherine Texier, Lauriane Kuhn, et al.. EnP1 and EnP2, two proteins associated with the Encephalitozoon cuniculi endospore, the chitin-rich inner layer of the microsporidian spore wall.. International Journal for Parasitology, Elsevier, 2006, 36 (3), pp.309-18. 〈10.1016/j.ijpara.2005.10.005〉. 〈hal-00527170〉
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Hicham El Alaoui, Stéphane J Grésoviac, Christian Vivarès. Occurrence of the microsporidian parasite Nucleospora salmonis in four species of salmonids from the Massif Central of France. Folia Parasitologica, Institute of Parasitology Czechoslovak Academy of, 2006, 53 (1), pp.37-43. 〈hal-00529770〉
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Sébastien Pomel, Marie Diogon, Philippe Bouchard, Lydie Pradel, Viviane Ravet, et al.. The membrane skeleton in Paramecium: Molecular characterization of a novel epiplasmin family and preliminary GFP expression results.. Protist, Elsevier, 2006, 157 (1), pp.61-75. 〈10.1016/j.protis.2005.11.002〉. 〈hal-00526582〉
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Angelika Herm-Götz, Frédéric Delbac, Stefan Weiss, Miklos Nyitrai, Rolf Stratmann, et al.. Functional and biophysical analyses of the class XIV Toxoplasma gondii Myosin D.. Journal of muscle research and cell motility., 2006, 27(2), pp.139-51. 〈hal-00086304〉
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Sébastien Personnic, Solange Duhamel, Yvan Bettarel, Télesphore Sime-Ngando, Stéphan Jacquet. Les virus planctoniques : un compartiment clé des écosystèmes aquatiques.. Courrier de l'environnement, 2006, pp.19-34. 〈hal-00528569〉
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Maryvonne Charrier, Gérard Fonty, Brigitte Gaillard-Martinie, Abdelkader Aïnouche, Gerard Andant. Isolation and characterization of fermentative bacteria from the intestine of two edible snails, Helix pomatia and Cantareus aspersus (Gastropoda: Pulmonata).. Biological research., 2006, 00, pp.00-00. 〈hal-00090003〉
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Angelika Herm-Götz, Frédéric Delbac, Stefan Weiss, Miklos Nyitrai, Rolf Stratmann, et al.. Functional and biophysical analyses of the class XIV Toxoplasma gondii myosin D.. Journal of Muscle Research & Cell Motility, 2006, 27 (2), pp.139-51. 〈10.1007/s10974-005-9046-1〉. 〈hal-00527175〉
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A. Ter Halle, C. Richard. Simulated solar light irradiation of mesotrione in natural waters. Environmental Science and Technology, American Chemical Society, 2006, 40, pp.3842-3847. 〈hal-00131376〉
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Louis-B Jugnia, Mathilde Richardot, Didier Debroas, J. Devaux. Bacterial production in the recently flooded Sep Reservoir : Diel changes in relation to dissolved carbohydrates and combined amino acids. Hydrobiologia, Springer, 2006, 563, pp.421-430. 〈hal-00528198〉
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Jannet Elloumi, Jean-François Carrias, Habib Ayadi, Télesphore Sime-Ngando, Mekki Boukhris, et al.. Composition and distribution of planktonic ciliates from ponds of different salinity in the solar saltwork of Sfax, Tunisia. Estuarine, Coastal and Shelf Science, Elsevier, 2006, 67 (1-2), pp.21-29. 〈10.1016/j.ecss.2005.10.011〉. 〈hal-00527065〉
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Isabelle Mary, J.-L. Heywood, B.M. Fuchs, R. Amann, G. A. Tarran, et al.. SAR11 dominance among metabolically active low nucleic acid bacterioplankton in surface waters along an Atlantic Meridional Transect. Aquatic Microbial Ecology, Inter Research, 2006, 45 (2), pp.107-113. 〈hal-00528806〉
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Isabelle Mary, D. G. Cummings, Isabelle Biegala, P. H. Burkill, D. S. Archer, et al.. Seasonal dynamics of bacterioplankton community structure at a coastal station in the western English Channel. Aquatic Microbial Ecology, Inter Research, 2006, 42 (2), pp.119-126. 〈hal-00528809〉
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Alexandre Bec, Dominik Martin-Creuzburg, Erik Von Alert. Trophic upgrading of autotrophic picoplankton by the heterotrophic nanoflagellate Paraphysomonas sp. Limnology and Oceanography, Association for the Sciences of Limnology and Oceanography, 2006, 51 (4), pp.1699-1707. 〈hal-00525870〉
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Anne-Hélène Le Jeune, Marie Charpin, Véronique Deluchat, Jean-François Briand, Jean-François Lenain, et al.. Effect of copper sulphate treatment on natural phytoplanktonic communities. Aquatic Toxicology, Elsevier, 2006, 80, pp.267-280. 〈10.1016/j.aquatox.2006.09.004〉. 〈hal-00931137〉
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Conference papers

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Isabelle Domaizon, Sébastien Personnic, Jérôme Comte, Cécile Lepère, Abdourahmane Mbade Sène, et al.. Les Réseaux trophiques microbiens : Structure et facteurs de contrôle dans le lac du Bourget. Université de Savoie. Autour du lac du Bourget, May 2006, Le Bourget du Lac, France. La page blanche, pp. 116-124, 2008. 〈halshs-00380857〉
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Ndongo Dia. Etude d'une famille multigénique chez Encephalitozoon cuniculi, une microsporidie pathogène de l'homme. Biologie du développement. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2006. Français. 〈NNT : 2006CLF21724〉. 〈tel-00713572〉
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Stéphane Pesce. Effets de pesticides sur l'activité et la diversité des communautés microbiennes d'un milieu lotique récepteur. Etudes in situ et expérimentales. Biochimie, Biologie Moléculaire. Université Blaise Pascal - Clermont-Ferrand II, 2006. Français. 〈tel-00717397〉
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Laurent Leotoing. La nucléophosmine, un nouveau partenaire du récepteur des androgènes. Implication dans le cancer de la prostate. Santé publique et épidémiologie. Université Blaise Pascal - Clermont-Ferrand II; Université d'Auvergne - Clermont-Ferrand I, 2006. Français. 〈NNT : 2006CLF21690〉. 〈tel-00703383〉
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Sébastien Rimour. Méthodes et outils logiciels pour la conception de sondes oligonucléotidiques pour puces à ADN. Applications aux biopuces transcriptomiques et aux biopuces de type phylogénétique. Biotechnologie. Université Blaise Pascal - Clermont-Ferrand II, 2006. Français. 〈NNT : 2006CLF21691〉. 〈tel-00703396〉
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Anne-Catherine Lehours. La communauté procaryotique dans les zones anoxiques de deux écosystèmes lacustres : structure et diversité. Etude plus particulière de son rôle fonctionnel dans le monimolimnion. Microbiologie et Parasitologie. Université Blaise Pascal - Clermont-Ferrand II, 2006. Français. 〈NNT : 2006CLF21685〉. 〈tel-00703327〉
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Vanessa Taupin. La différenciation sporale chez les microsporidies : imagerie 3D et isolement des stades de développement, analyse de l'expression différentielle de protéines structurales et première identification des glycanes. Génétique. Université Blaise Pascal - Clermont-Ferrand II, 2006. Français. 〈NNT : 2006CLF21679〉. 〈tel-00702783〉
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Valérie Polonais. Identification de nouvelles protéines du tube polaire et de la paroi sporale chez différentes espèces microsporidiennes. Essais de tranfection d'Encephalitozoon cuniculi. Microbiologie et Parasitologie. Université Blaise Pascal - Clermont-Ferrand II, 2006. Français. 〈NNT : 2006CLF21671〉. 〈tel-00695273〉
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Damien Brosson. Analyse protéomique et caractérisation de nouvelles protéines de paroi chez Encephalitozoon cuniculi, une microsporidie pathogène de l'homme. Biologie cellulaire. Université Blaise Pascal - Clermont-Ferrand II, 2006. Français. 〈NNT : 2006CLF21636〉. 〈tel-00688692〉
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2005

Journal articles

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Francis Girard, Isabelle Batisson, Gad M Frankel, Josée Harel, John M Fairbrother. Interaction of enteropathogenic and Shiga toxin-producing Escherichia coli and porcine intestinal mucosa: role of intimin and Tir in adherence.. Infection and Immunity, American Society for Microbiology, 2005, 73 (9), pp.6005-16. 〈10.1128/IAI.73.9.6005-6016.2005〉. 〈hal-00529352〉
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Sébastien Rimour, David Hill, Cécile Militon, Pierre Peyret. GoArrays: highly dynamic and efficient microarray probe design. Bioinformatics, Oxford University Press (OUP), 2005, 21 (7), pp.1094-103. 〈10.1093/bioinformatics/bti112〉. 〈hal-00257859〉
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Solange Duhamel, Sébastien Personnic, Stéphan Jacquet, Télesphore Sime-Ngando, B. Delmas. Importance des virus en milieu lacustre. INRA Mensuel, 2005, pp.8-9. 〈hal-00528572〉
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Zébazé Tougouet S.H, T. Njine, N. Kemka, M. Nola, Foto Menbohan S., et al.. Variations spatiales et temporelles de la richesse et de l'abondance des rotifères (Brachionidae et Trichocercidae) et des cladocères dans un petit lac artificiel eutrophe situé en zone tropicale = Spatial and temporal variations in the richness and abundance of rotifer (Brachionidae and Trichocercidae) and cladoceran communities in a small artificial eutrophic tropical lake. Revue des Sciences de l'Eau/Journal of Water, 2005, 18 (4), pp.485-505. 〈hal-00527499〉
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Emilie Lefèvre, Jean-François Carrias, Corinne Bardot, Télesphore Sime-Ngando, Christian Amblard. A preliminary study of heterotrophic picoflagellates using oligonucleotidic probes in Lake Pavin. Hydrobiologia, Springer, 2005, 551, pp.61-67. 〈hal-00527490〉
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Néji Toumi, Habib Ayadi, Olfa Abid, Jean-François Carrias, Télesphore Sime-Ngando, et al.. Zooplankton distribution in four ponds of different salinity: a seasonal study in the solar salterns of Sfax (Tunisia). Hydrobiologia, Springer, 2005, 534, pp.1-9. 〈hal-00527495〉
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Télesphore Sime-Ngando, Angia Sriram Pradeep Ram. Grazer effects on prokaryotes and viruses in a freshwater microcosm experiment. Aquatic Microbial Ecology, Inter Research, 2005, 41 (2), pp.115-124. 〈hal-00527466〉
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Yvan Bettarel, Télesphore Sime-Ngando, Marc Bouvy, Robert Arfi, Christian Amblard. Low consumption of virus-sized particles by heterotrophic nanoflagellates in two lakes of the French Massif Central. Aquatic Microbial Ecology, Inter Research, 2005, 39 (2), pp.205-209. 〈hal-00527473〉
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Angia Sriram Pradeep Ram, D. Boucher, Télesphore Sime-Ngando, Didier Debroas, J. C. Romagoux. Phage bacteriolysis, protistan bacterivory potential, and bacterial production in a freshwater reservoir : Coupling with temperature. Microbial Ecology, Springer Verlag, 2005, 50 (1), pp.64-72. 〈hal-00527475〉
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R. D. Tadonleke, D. Planas, A. Lucotte. Microbial food webs in boreal humic lakes and reservoirs: Ciliates as a major factor related to the dynamics of the most active bacteria. Microbial Ecology, Springer Verlag, 2005, 49 (2), pp.325-341. 〈hal-01663359〉
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R. D. Tadonleke, D. Planas, M. Lucotte. Microbial food webs in boreal humic lakes and reservoirs: ciliates as a major factor related to the dynamics of the most active bacteria. Microbial Ecology, Springer Verlag, 2005, 49 (2), pp.325-41. 〈hal-01663240〉
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Ludwig Jardillier, Yvan Bettarel, Mathilde Richardot, Corinne Bardot, Christian Amblard, et al.. Effects of viruses and predators on prokaryotic community composition. Microbial Ecology, Springer Verlag, 2005, 50 (4), pp.557-569. 〈hal-00527468〉
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Karel Hornak, Michal Masin, Jan Jezbera, Yvan Bettarel, Jiri Nedoma, et al.. Effects of decreased resource availability, protozoan grazing and viral impact on a structure of bacterioplankton assemblage in a canyon-shaped reservoir. FEMS Microbiology Ecology, Wiley-Blackwell, 2005, 52 (3), pp.315-327. 〈hal-00527470〉
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Stéphan Jacquet, Isabelle Domaizon, Sébastien Personnic, Angia Sriram Pradeep Ram, Mikal Hedal, et al.. Estimates of protozoan- and viral-mediated mortality of bacterioplankton in Lake Bourget (France). Freshwater Biology, Wiley, 2005, 50 (4), pp.627-645. 〈hal-00527477〉
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Sébastien Pomel. Squelette membranaire chez Paramecium tetraurelia : caractérisation d'une nouvelle famille multigénique et analyse par les approches GFP et RNAi. Biologie cellulaire. Université Blaise Pascal - Clermont-Ferrand II, 2005. Français. 〈NNT : 2005CLF21630〉. 〈tel-00686966〉
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Aurélie Vera. Stratégies de développement du copépode calanoïde Mixodiaptomus laciniatus dans un lac de montagne : approche par les biomarqueurs lipidiques et pigmentaires. Ecologie, Environnement. Université Blaise Pascal - Clermont-Ferrand II, 2005. Français. 〈NNT : 2005CLF21623〉. 〈tel-00684181〉
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2004

Journal articles

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Isabelle Mary, Chao-Jung Tu, Arthur Grossman, Daniel Vaulot. Effects of high light on transcripts of stress-associated genes for the cyanobacteria Synechocystis sp. PCC 6803 and Prochlorococcus MED4 and MIT9313.. Microbiology, Microbiology Society, 2004, 150 (Pt 5), pp.1271-81. 〈hal-00528888〉
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Yvan Bettarel, Télesphore Sime-Ngando, Christian Amblard, John Dolan. Viral activity in two contrasting lake ecosystems. Applied and Environmental Microbiology, American Society for Microbiology, 2004, 70 (5), pp.2941-51. 〈hal-00527505〉
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Habib Ayadi, Olfa Abib, Jannet Elloumi, Abderrahmen Bouaïn, Télesphore Sime-Ngando. Structure of the phytoplankton communities in two lagoons of different salinity in the Sfax saltern (Tunisia). Journal of Plankton Research, Oxford University Press (OUP), 2004, 26 (6), pp.669-679. 〈hal-00527512〉
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2003

Journal articles

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Isabelle Batisson, Marie-Pierre Guimond, Francis Girard, Hongyan An, Chengru Zhu, et al.. Characterization of the novel factor paa involved in the early steps of the adhesion mechanism of attaching and effacing Escherichia coli.. Infection and Immunity, American Society for Microbiology, 2003, 71 (8), pp.4516-25. 〈hal-00529349〉
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Hojabr Dezfulian, Isabelle Batisson, John M Fairbrother, Peter C K Lau, Atef Nassar, et al.. Presence and characterization of extraintestinal pathogenic Escherichia coli virulence genes in F165-positive E. coli strains isolated from diseased calves and pigs.. Journal of Clinical Microbiology, American Society for Microbiology, 2003, 41 (4), pp.1375-85. 〈hal-00529341〉
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Télesphore Sime-Ngando, Yvan Bettarel, C. Chartogne, K. Sean. The imprint of wild viruses on freshwater microbial ecology. Recent Research Development in Microbiology, 2003, 7, pp.481-497. 〈hal-00527547〉
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Remy D. Tadonleke, Antoine Thouvenot, D. Gilbert, Télesphore Sime-Ngando, Didier Debroas, et al.. Size-fractionated phytoplankton and relationships with metazooplankton in a newly flooded reservoir. International Review of Hydrobiology, Wiley-VCH Verlag, 2003, 88 (6), pp.614-634. 〈hal-00527519〉
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Yvan Bettarel, Télesphore Sime-Ngando, Christian Amblard. Grazing by heterotrophic nanoflagellates on virus and bacterial sized particles in two lakes of different trophic status. Journal of Phycology, Wiley, 2003, 43, pp.1-65. 〈hal-00527533〉
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Yvan Bettarel, Télesphore Sime-Ngando, Christian Amblard, Jean-François Carrias, C. Portelli. Virioplankton and microbial communities in aquatic systems: a seasonal study in two lakes of differing trophy. Freshwater Biology, Wiley, 2003, 48 (5), pp.810-822. 〈hal-00527535〉
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Yvan Bettarel, Christian Amblard, Télesphore Sime-Ngando, Jean-François Carrias, Denis Sargos, et al.. Viral lysis, flagellate grazing potential, and bacterial production in lake Pavin. Microbial Ecology, Springer Verlag, 2003, 45 (2), pp.119-127. 〈hal-00527524〉
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2002

Journal articles

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Guy Brugerolle, Geneviève Bricheux, Hervé Philippe, Gérard Coffe. Collodictyon triciliatum and Diphylleia rotans (=Aulacomonas submarina) form a new family of flagellates (Collodictyonidae) with tubular mitochondrial cristae that is phylogenetically distant from other flagellate groups.. Protist, Elsevier, 2002, 153 (1), pp.59-70. 〈hal-00783603〉
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R. D. Tadonléké, L. B. Jugnia, Télesphore Sime-Ngando, J. Devaux, J. C. Romagoux. Food web structure in the recently flooded Sep Reservoir as inferred from phytoplankton population dynamics and living microbial biomass.. Microbial Ecology, Springer Verlag, 2002, 43 (1), pp.67-81. 〈10.1007/s00248-001-1015-7〉. 〈hal-00527555〉
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S. Rachio, M. Raoui, N. Chadli, Christian Amblard, M. M. Alaoui, et al.. Potentialités phagotrophes des phytoflagellés dans la retenue de barrage Allal El Fassi (Maroc). Revue des Sciences de l'Eau/Journal of Water, 2002, 15 (1), pp.87-99. 〈hal-00527672〉
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Habib Ayadi, Néji Toumi, Olfa Abid, K. Medhioub, M. Hammami, et al.. Étude qualitative et quantitative des peuplements phyto- et zooplanctoniques dans les bassins de la saline de Sfax, Tunisie. Revue des Sciences de l'Eau/Journal of Water, 2002, 15 (1), pp.123-135. 〈hal-00527671〉
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Jean-François Carrias, Jean-Philippe Serre, Télesphore Sime-Ngando, Christian Amblard. Distribution, size, and bacterial colonization of pico- and nano-detrital organic particles (DOP) in two lakes of different trophic status. Limnology and Oceanography, Association for the Sciences of Limnology and Oceanography, 2002, 47 (4), pp.1202-1209. 〈hal-00527538〉
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Yvan Bettarel, Télesphore Sime-Ngando, Christian Amblard, Jean-François Carrias, Denis Sargos, et al.. The functional importance of bacteriophages in the microbial loop of an oligomesotrophic lake over a diel cycle. Annales de Limnologie - International Journal of Limnology, EDP sciences, 2002, 38 (4), pp.263-269. 〈hal-00527557〉
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Yvan Bettarel, J. R. Dolan, Karel Hornak, R. Lemee, Michal Masin, et al.. Strong, weak, and missing links in a microbial community of the N.W. Mediterranean Sea. FEMS Microbiology Ecology, Wiley-Blackwell, 2002, 42 (3), pp.451-462. 〈hal-00527545〉
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2001

Journal articles

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Olfa Abid, Habib Ayadi, Alia Sellami Kamoun, Télesphore Sime-Ngando, K. Medhioub. Planktonic biomass estimation in different ponds of the Sfax saltworks. Mediterranean Coastal Environment 2, 2001, pp.999-1006. 〈hal-00528564〉
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Néji Toumi, Habib Ayadi, Télesphore Sime-Ngando, Ridha Amdouni, Christian Amblard, et al.. The microbial loop in the Sfax saltworks (Tunisia): quantitative importance of ciliated protozoa and bacteria. Mediterranean Coastal Environment 2, 2001, pp.1017-1024. 〈hal-00528563〉
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Néji Toumi, Habib Ayadi, Mohamed Hammami, Télesphore Sime-Ngando, Christian Amblard, et al.. Artemia in the saltworks of Sfax (Tunisia): distribution and economical importance for aquaculture. Mediterranean Coastal Environment 2, 2001, pp.1007-1016. 〈hal-00528561〉
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Jean-François Carrias, Antoine Thouvenot, Christian Amblard, Télesphore Sime-Ngando. Dynamics and growth estimates of planktonic protists during early spring in Lake Pavin, France. Aquatic Microbial Ecology, Inter Research, 2001, 24 (2), pp.163-174. 〈10.3354/ame024163〉. 〈hal-00527673〉
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S. Ogier, Jean-Robert Disnar, Patrick Albéric, G. Bourdier. Neutral carbohydrate geochemistry of particulate material (trap and core sediments) in an eutrophic lake (Aydat, France). Organic Geochemistry, Elsevier, 2001, 32, pp.151-162. 〈10.1016/S0146-6380(00)00138-8〉. 〈hal-00089809〉
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Louis-B Jugnia, Télesphore Sime-Ngando. An assessment of the impact of Mingoa Stream input to the bacteriological quality of the Municipal Lake of Yaoundé (Cameroon). Water Resources Management, Springer Verlag, 2001, 15 (3), pp.203-209. 〈hal-00527674〉
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2000

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I. Batisson, M. Der Vartanian. Contribution of defined amino acid residues to the immunogenicity of recombinant Escherichia coli heat-stable enterotoxin fusion proteins.. FEMS Microbiology Letters / FEMS Microbiological Letters, 2000, 192 (2), pp.223-9. 〈hal-00529334〉
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I. Batisson, M. Der Vartanian, B. Gaillard-Martinie, M. Contrepois. Full capacity of recombinant Escherichia coli heat-stable enterotoxin fusion proteins for extracellular secretion, antigenicity, disulfide bond formation, and activity.. Infection and Immunity, American Society for Microbiology, 2000, 68 (7), pp.4064-74. 〈hal-00529330〉
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Geneviève Bricheux, Gérard Coffe, Danielle Bayle, Guy Brugerolle. Characterization, cloning and immunolocalization of a coronin homologue in Trichomonas vaginalis.. European Journal of Cell Biology, Elsevier, 2000, 79 (6), pp.413-22. 〈10.1078/0171-9335-00065〉. 〈hal-00783606〉
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I. Batisson, M. Der Vartanian. Extracellular DsbA-insensitive folding of Escherichia coli heat-stable enterotoxin STa in vitro.. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2000, 275 (14), pp.10582-9. 〈hal-00529325〉
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Guy Brugerolle, Geneviève Bricheux, Gérard Coffe. Immunolocalization of two hydrogenosomal enzymes of Trichomonas vaginalis.. Parasitology Research, Springer Verlag (Germany), 2000, 86 (1), pp.30-5. 〈hal-00783610〉
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Guy Brugerolle, Geneviève Bricheux, Gérard Coffe. Centrin protein and genes in Trichomonas vaginalis and close relatives.. Journal of Eukaryotic Microbiology, Wiley, 2000, 47 (2), pp.129-38. 〈hal-00783609〉
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R. D. Tadonléké, Télesphore Sime-Ngando, Christian Amblard, Denis Sargos, J. Devaux. Primary productivity in the recently flooded 'Sep Reservoir' (Puy-de-Dôme, France). Journal of Plankton Research, Oxford University Press (OUP), 2000, 22 (7), pp.1355-1375. 〈hal-00527680〉
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Louis-B Jugnia, M. Richardot, D. Debroas, Télesphore Sime-Ngando, J. Devaux. Variations in the number of active bacteria in the euphotic zone of a recently flooded reservoir. Aquatic Microbial Ecology, Inter Research, 2000, 22 (3), pp.251-259. 〈hal-00527678〉
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R. D. Tadonléké, Télesphore Sime-Ngando. Rates of growth and microbial grazing mortality of phytoplankton in a recent artificial lake. Aquatic Microbial Ecology, Inter Research, 2000, 22, pp.301-313. 〈hal-00527677〉
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Jean-François Brugère, Emmanuel Cornillot, Guy Méténier, Aaron Bensimon, Christian Vivarès. Encephalitozoon cuniculi (Microspora) genome: physical map and evidence for telomere-associated rDNA units on all chromosomes. Nucleic Acids Research, Oxford University Press, 2000, 28 (10), pp.2026 - 2033. 〈10.1093/nar/28.10.2026〉. 〈hal-01612753〉
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Jean-François Brugère, Emmanuel Cornillot, Guy Méténier, Christian Vivarès. In-gel DNA radiolabelling and two-dimensional pulsed field gel electrophoresis procedures suitable for fingerprinting and mapping small eukaryotic genomes. Nucleic Acids Research, Oxford University Press, 2000, 28 (10), pp.48e - 48. 〈10.1093/nar/28.10.e48〉. 〈hal-01612762〉
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Louis-B Jugnia, R. D. Tadonléké, Télesphore Sime-Ngando, J. Devaux. The microbial food web in the recently flooded Sep reservoir : Diel fluctuations in bacterial biomass and metabolic activity in relation to phytoplankton and flagellate grazers. Microbial Ecology, Springer Verlag, 2000, 40 (4), pp.317-329. 〈hal-00527676〉
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Yvan Bettarel, Télesphore Sime-Ngando, Christian Amblard, Henri Laveran. A comparison of methods for counting viruses in aquatic systems. Applied and Environmental Microbiology, American Society for Microbiology, 2000, 66 (6), pp.2283-2289. 〈hal-00527675〉
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1999

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Télesphore Sime-Ngando, S. Demers, S.K. Juniper. Protozoan Bacterivory in the Ice and the Water Column of a Cold Temperate Lagoon.. Microbial Ecology, Springer Verlag, 1999, 37 (2), pp.95-106. 〈hal-00527681〉
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B. Mostajir, Télesphore Sime-Ngando, S. Demers, C. Belzile, S. Roy, et al.. Ecological implications of changes in cell size and photosynthetic capacity of marine Prymnesiophyceae induced by ultraviolet-B radiation. Marine Ecology Progress Series, Inter-Research, 1999, 187, pp.89-100. 〈hal-00527683〉
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Louis-B Jugnia, R. D. Tadonléké, Télesphore Sime-Ngando, J. Devaux, C. Andrivon. Bacterial population dynamics, production, and heterotrophic activity in a recently formed reservoir. Canadian Journal of Microbiology, NRC Research Press, 1999, 45 (9), pp.747-753. 〈hal-00527685〉
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1998

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Geneviève Bricheux, Gérard Coffe, Nathalie Pradel, Guy Brugerolle. Evidence for an uncommon alpha-actinin protein in Trichomonas vaginalis.. Molecular and Biochemical Parasitology, Elsevier, 1998, 95 (2), pp.241-9. 〈hal-00783614〉
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I. Sibille, Télesphore Sime-Ngando, L. Mathieu, J. C. Block. Protozoan bacterivory and Escherichia coli survival in drinking water distribution systems.. Applied and Environmental Microbiology, American Society for Microbiology, 1998, 64 (1), pp.197-202. 〈hal-00527689〉
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Christian Amblard, J.-C. Boisson, Gilles Bourdier, D. Fontvieille, X. Gayte, et al.. Ecologie microbienne en milieu aquatique : des virus aux protozoaires. Revue des Sciences de l'Eau/Journal of Water, 1998, 11, pp.145-162. 〈hal-00528623〉
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R. D. Tadonléké, Louis-B Jugnia, Télesphore Sime-Ngando, S. Zebaze, M. Nola. Short-term vertical distribution of phytoplankton populations in a shallow tropical lake (Lake Municipal, Yaoundé, Cameroon). Archiv für Hydrobiology, 1998, 143 (4), pp.469-485. 〈hal-00527687〉
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Louis-B Jugnia, R. D. Tadonléké, Télesphore Sime-Ngando, Samuel D. Foto, N. Kemka. Short-term variations in the abundance and cell volume of bacterioplankton in an artificial tropical lake. Hydrobiologia, Springer, 1998, 385 (1-3), pp.113-119. 〈hal-00527686〉
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1997

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Geneviève Bricheux, Guy Brugerolle. Molecular cloning of actin genes in Trichomonas vaginalis and phylogeny inferred from actin sequences.. FEMS Microbiology Letters, Wiley-Blackwell, 1997, 153 (1), pp.205-13. 〈hal-00783616〉
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F. Riemann, Télesphore Sime-Ngando. Note on sea-ice nematodes (Monhysteroidea) from the Resolute Passage, Canadian High Arctic. Polar Biology, Springer Verlag, 1997, 18 (1), pp.70-75. 〈hal-00527690〉
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Télesphore Sime-Ngando, S.K. Juniper, S. Demers. Ice-brine and planktonic microheterotrophs from Saroma-ko Lagoon, Hokkaido (Japan): quantitative importance and trophodynamics. Journal of Marine Systems, Elsevier, 1997, 11 (1-2), pp.149-161. 〈hal-00528631〉
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Télesphore Sime-Ngando, Michel Gosselin, S.K. Juniper, Maurice Levasseur. Changes in sea-ice phagotrophic microprotists (20-200 µm) during the spring algal bloom, Canadian Arctic Archipelago. Journal of Marine Systems, Elsevier, 1997, 11 (1-2), pp.163-172. 〈10.1016/S0924-7963(96)00036-X〉. 〈hal-00528627〉
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A. F. Vezina, S. Demers, I. Laurion, Télesphore Sime-Ngando, S.K. Juniper, et al.. Carbon flows through the microbial food web of first-year ice in Resolute Passage (Canadian High Arctic). Journal of Marine Systems, Elsevier, 1997, 11 (1-2), pp.173-189. 〈hal-00528645〉
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Télesphore Sime-Ngando. Importance des virus dans la structure et le fonctionnement des réseaux trophiques microbiens aquatiques. Annee Biologique, Elsevier, 1997, 36 (3), pp.181-210. 〈hal-00527420〉
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1996

Journal articles

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Suzanne Roy, J.-P. Chanut, Michel Gosselin, Télesphore Sime-Ngando. Characterization of phytoplankton communities in the lower St. Lawrence Estuary using HPLC-detected pigments and cell microscopy. Marine Ecology Progress Series, Inter-Research, 1996, 142, pp.55-73. 〈10.3354/meps142055〉. 〈hal-00527695〉
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Guy Brugerolle, Geneviève Bricheux, Gérard Coffe. Actin cytoskeleton demonstration in Trichomonas vaginalis and in other trichomonads.. Biology of the Cell, Wiley, 1996, 88 (1-2), pp.29-36. 〈hal-00783619〉
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Télesphore Sime-Ngando, J.-P. Mignot, Christian Amblard, Gilles Bourdier, Christian Desvilettes, et al.. Caractérisation des particules virales planctoniques dans un lac du Massif Central français : aspects méthodologiques et premiers résultats. Annales de Limnologie - International Journal of Limnology, EDP sciences, 1996, 32 (4), pp.259-263. 〈hal-00527691〉
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1995

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R.E.H Smith, S. Demers, H. Hattori, S. Kudoh, L. Legendre, et al.. Biological and chemical investigations of the Saroma-Resolute Project in ice-covered Resolute Passage, 1992. Canadian Data Report of Hydrography and Ocean sciences, 1995, pp.30. 〈hal-00527717〉
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Télesphore Sime-Ngando, Michel Gosselin, Suzanne Roy, J.-P. Chanut. Significance of planktonic ciliated protozoa in the Lower St. Lawrence Estuary : comparison with bacterial, phytoplankton, and particulate organic carbon. Aquatic Microbial Ecology, Inter Research, 1995, 9, pp.243-258. 〈hal-00527705〉
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Télesphore Sime-Ngando. Population dynamics of autotrophic picoplankton in relation to environmental factors in a productive lake. Aquatic Sciences - Research Across Boundaries, Springer Verlag, 1995, 57 (2), pp.91-105. 〈hal-00527706〉
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1993

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Christian Amblard, Télesphore Sime-Ngando, Saad Rachiq, Gilles Bourdier. Importance of ciliated protozoa in relation to the bacterial and phytoplankton biomass in an oligo-mesotrophic lake during the spring diatom bloom. Aquatic Sciences - Research Across Boundaries, Springer Verlag, 1993, 55 (1), pp.1-9. 〈10.1007/BF00877254〉. 〈hal-00527721〉
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1992

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Télesphore Sime-Ngando, K. Juniper, Alain Vezina. Ciliated protozoan communities over Cobb Seamount : Increase in biomass and spatial patchiness. Marine Ecology Progress Series, Inter-Research, 1992, 89, pp.37-51. 〈hal-00527730〉
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1991

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Télesphore Sime-Ngando, Claude Alain Groliere. Effets quantitatifs des fixateurs sur le stockage des ciliés d'eaux douces. Archiv für Protistenkunde, 1991, 140, pp.109-120. 〈hal-00527742〉
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Télesphore Sime-Ngando, H. J. Hartmann. Short-term variations of the abundance and biomass of planktonic ciliates in a eutrophic lake. European Journal of Protistology, Elsevier, 1991, 27 (3), pp.249-263. 〈hal-00527735〉
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Télesphore Sime-Ngando, Gilles Bourdier, Christian Amblard, B. Pinel-Alloul. Short-term variations in specific biovolumes of different bacterial forms in aquatic ecosystems. Microbial Ecology, Springer Verlag, 1991, 21 (3), pp.211-226. 〈hal-00527731〉
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1990

Journal articles

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Télesphore Sime-Ngando, H. J. Hartmann, Claude Alain Groliere. Rapid Quantification of Planktonic Ciliates: Comparison of Improved Live Counting with Other Methods. Applied and Environmental Microbiology, American Society for Microbiology, 1990, 56 (7), pp.2234-2242. 〈hal-00527745〉
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1988

Journal articles

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Bernard Vigues, Geneviève Bricheux, Christine Metivier, Guy Brugerolle, R. K. Peck. Evidence for common epitopes among proteins of the membrane skeleton of a ciliate, an euglenoid and a dinoflagellate.. European Journal of Protistology, Elsevier, 1988, 23 (2), pp.101-10. 〈10.1016/S0932-4739(88)80053-1〉. 〈hal-00783624〉
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