Publications HAL

2024

Preprints, Working Papers, ...

titre
Trade-off between predictive performance and FDR control for high-dimensional Gaussian model selection
auteur
Perrine Lacroix, Marie-Laure Martin
article
2024
identifiant
hal-03978309
Resume_court
In the context of the high-dimensional Gaussian linear regression for ordered variables, we study th .....
typdoc
Preprints, Working Papers, ...
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https://hal.science/hal-03978309/file/article_FDR_ArXiv.pdf BibTex
titre
An overview of variable selection procedures using regularization paths in high-dimensional Gaussian linear regression
auteur
Perrine Lacroix, Mélina Gallopin, Marie-Laure Martin
article
2024
identifiant
hal-03366851
Resume_court
Current high-throughput technologies provide a large amount of variables to describe a phenomenon. O .....
typdoc
Preprints, Working Papers, ...
Accès au texte intégral et bibtex
https://hal.science/hal-03366851/file/ArXiv_review.pdf BibTex

2023

Journal articles

titre
Plasticity QTLs specifically contribute to the genotype × water availability interaction in maize
auteur
Yacine Djabali, Renaud Rincent, Marie-Laure Martin, Mélisande Blein-Nicolas
article
TAG Theoretical and Applied Genetics, 2023, 136 (11), pp.228. ⟨10.1007/s00122-023-04458-z⟩
identifiant
hal-04002996
Resume_court
Concerns regarding high maize yield losses due to increasing occurrences of drought events are growi .....
typdoc
Journal articles
DOI
DOI : 10.1007/s00122-023-04458-z
pubmedId
Pubmed icone : 37855950
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-04002996/file/article_plasticity.pdf BibTex
titre
Expression of cell-wall related genes is highly variable and correlates with sepal morphology
auteur
Diego A Hartasánchez, Annamaria Kiss, Virginie Battu, Charline Soraru, Abigail Delgado-Vaquera, Florian Massinon, Marina Brasó-Vives, Corentin Mollier, Marie-Laure Martin-Magniette, Arezki Boudaoud, Françoise Monéger
article
Peer Community Journal, 2023, 3 (93), ⟨10.24072/pcjournal.327⟩
identifiant
hal-04248384
Resume_court
Control of organ morphology is a fundamental feature of living organisms. There is, however, observa .....
typdoc
Journal articles
DOI
DOI : 10.24072/pcjournal.327
audience
International
Accès au texte intégral et bibtex
https://hal.science/hal-04248384/file/Proofs-10_24072_pcjournal_327_V3.pdf BibTex
titre
A localized osmotic stress activates systemic responses to N-limitation in Medicago truncatula-Sinorhizobium symbiotic plants
auteur
Marie-Laure Martin, Marjorie Pervent, Ilana Lambert, Stefano Colella, Mathilde Tancelin, Dany Severac, Gilles Clément, Pascal Tillard, Florian Frugier, Marc Lepetit
article
Frontiers in Plant Science, 2023, 14, pp.1288070. ⟨10.3389/fpls.2023.1288070⟩
identifiant
hal-04276739
Resume_court
The topic of this paper is the physiological adaptation of legume-rhizobium symbiotic plants to fluc .....
typdoc
Journal articles
DOI
DOI : 10.3389/fpls.2023.1288070
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-04276739/file/Martin%20M.L.-et%20al-FrontPlantSci-2023.pdf BibTex

Conference papers

titre
Proteomics-based systems approach of maize response to water deficit
auteur
Melisande Blein-Nicolas, Yacine Djabali, Claude Welcker, Llorenç Cabrera-Bosquet, Stephane Nicolas, Alain Charcosset, Michel Zivy, Renaud Rincent, Marie-Laure Martin-Magniette
article
5th InPPO Conference, May 2023, Thessalonique, Greece
identifiant
hal-04302629
Resume_court
The evolution of maize yields under water deficit conditions is of particular concern in the context .....
typdoc
Conference papers
audience
International
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2022

Journal articles

titre
Error rate control for classification rules in multiclass mixture models
auteur
Tristan Mary-Huard, Vittorio Perduca, Marie-Laure Martin-Magniette, Gilles Blanchard
article
The international journal of biostatistics, 2022, 18 (2), pp.381-396. ⟨10.1515/ijb-2020-0105⟩
identifiant
hal-04421501
Resume_court
Abstract In the context of finite mixture models one considers the problem of classifying as many ob .....
typdoc
Journal articles
DOI
DOI : 10.1515/ijb-2020-0105
audience
International
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titre
Analyzing Multifactorial RNA-Seq Experiments with DiCoExpress
auteur
Kevin Baudry, Christine Paysant-Le Roux, Stefano Colella, Benoît Castandet, Marie-Laure Martin-Magniette
article
Journal of visualized experiments : JoVE, 2022, 185, pp.e62566. ⟨10.3791/62566⟩
identifiant
hal-04274577
Resume_court
Summary: DiCoExpress is a script-based tool implemented in R to perform an RNA-Seq analysis from qua .....
typdoc
Journal articles
DOI
DOI : 10.3791/62566
pubmedId
Pubmed icone : 35969075
audience
International
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titre
Fusarium graminearum infection strategy in wheat involves a highly conserved genetic program that controls the expression of a core effectome
auteur
Florian Rocher, Tarek Alouane, Géraldine Philippe, Marie-Laure Martin, Philippe Label, Thierry Langin, Ludovic Bonhomme
article
International Journal of Molecular Sciences, 2022, 23 (3), pp.22. ⟨10.3390/ijms23031914⟩
identifiant
hal-03583788
Resume_court
Fusarium graminearum, the main causal agent of Fusarium Head Blight (FHB), is one of the most damagi .....
typdoc
Journal articles
DOI
DOI : 10.3390/ijms23031914
pubmedId
Pubmed icone : 35163834
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-03583788/file/2022_Rocher_ijms-23-01914-v2.pdf BibTex
titre
A comprehensive map of preferentially located motifs reveals distinct proximal cis -regulatory elements in plants
auteur
Julien Rozière, Cécile Guichard, Véronique Brunaud, Marie-Laure Martin, Sylvie Coursol
article
Frontiers in Plant Science, 2022, 13, pp.976371. ⟨10.3389/fpls.2022.976371⟩
identifiant
hal-04400803
Resume_court
The identification of cis -regulatory elements controlling gene expression is an arduous challenge t .....
typdoc
Journal articles
DOI
DOI : 10.3389/fpls.2022.976371
pubmedId
Pubmed icone : 36311095
audience
International
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https://hal.science/hal-04400803/file/fpls-13-976371.pdf BibTex
titre
A cell wall-associated gene network shapes leaf boundary domains
auteur
Nathalie Bouré, Alexis Peaucelle, Magali Goussot, Bernard Adroher, Ludivine Soubigou-Taconnat, Néro Borrega, Eric Biot, Zakia Tariq, Marie-Laure Martin-Magniette, Véronique Pautot, Patrick Laufs, Nicolas Arnaud
article
Development (Cambridge, England), 2022, 149 (11), pp.dev200359. ⟨10.1242/dev.200359⟩
identifiant
hal-03737566
Resume_court
Boundary domains delimit and organize organ growth throughout plant development almost relentlessly, .....
typdoc
Journal articles
DOI
DOI : 10.1242/dev.200359
pubmedId
Pubmed icone : 35575098
audience
International
Accès au texte intégral et bibtex
https://hal.science/hal-03737566/file/Boure_etal_Development_2022.pdf BibTex

Conference papers

titre
Drought response QTLs detected on phenotypic ratios contribute to the genotype x environment interaction.
auteur
Yacine Djabali, Renaud Rincent, Marie-Laure Martin-Magniette, Melisande Blein-Nicolas
article
XXVth EUCARPIA Maize and Sorghum Conference, May 2022, Belgrade, Serbia
identifiant
hal-03879700
Resume_court
Drought stress can considerably affect maize yields, which is a source of concern for maintaining gl .....
typdoc
Conference papers
audience
International
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BibTex

Preprints, Working Papers, ...

titre
Robustness of organ morphology is associated with modules of co-expressed genes related to plant cell wall
auteur
Diego A Hartasánchez, Annamaria Kiss, Virginie Battu, Mathilde Dumond, Charline Soraru, Abigail Delgado-Vaquera, Florian Massinon, Marina Brasó-Vives, Corentin Mollier, Nelly Dubrulle, Fabien Sénéchal, Marie-Laure Martin-Magniette, Arezki Boudaoud, Françoise Monéger
article
2022
identifiant
hal-03832424
Resume_court
Reproducibility in organ size and shape is a fundamental trait of living organisms. The mechanisms u .....
typdoc
Preprints, Working Papers, ...
DOI
DOI : 10.1101/2022.04.26.489498
Accès au texte intégral et bibtex
https://hal.science/hal-03832424/file/Hartasanchez%20et%20al%202022.pdf BibTex

2021

Journal articles

titre
Systemic control of nodule formation by plant nitrogen demand requires autoregulation-dependent and independent mechanisms
auteur
Marjorie Pervent, Ilana Lambert, Marc Tauzin, Alicia Karouani, Martha Nigg, Marie-Françoise Jardinaud, Dany Severac, Stefano Colella, Marie-Laure Martin-Magniette, Marc Lepetit
article
Journal of Experimental Botany, 2021, 72 (22), pp.7942-7956. ⟨10.1093/jxb/erab374⟩
identifiant
hal-03596911
Resume_court
In legumes interacting with rhizobia, the formation of symbiotic organs involved in the acquisition .....
typdoc
Journal articles
DOI
DOI : 10.1093/jxb/erab374
pubmedId
Pubmed icone : 34427647
audience
International
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titre
A case of gene fragmentation in plant mitochondria fixed by the selection of a compensatory restorer of fertility-like PPR gene
auteur
Tan-Trung Nguyen, Noelya Planchard, Jennifer Dahan, Nadège Arnal, Sandrine Balzergue, Abdelilah Benamar, Pierre Bertin, Véronique Brunaud, Céline Dargel-Graffin, David Macherel, Marie-Laure Martin-Magniette, Martine Quadrado, Olivier Namy, Hakim Mireau
article
Molecular Biology and Evolution, 2021, 38 (8), pp.3445-3458. ⟨10.1093/molbev/msab115⟩
identifiant
hal-03236517
Resume_court
Abstract The high mutational load of mitochondrial genomes combined with their uniparental inheritan .....
typdoc
Journal articles
DOI
DOI : 10.1093/molbev/msab115
pubmedId
Pubmed icone : 33878189
audience
International
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titre
Involvement of SUT1 and SUT2 Sugar Transporters in the Impairment of Sugar Transport and Changes in Phloem Exudate Contents in Phytoplasma-Infected Plants
auteur
Federica de Marco, Brigitte Batailler, Michael R. Thorpe, Frédérique Razan, Rozenn Le Hir, Françoise Vilaine, Alain Bouchereau, Marie-Laure Martin-Magniette, Sandrine Eveillard, Sylvie Dinant
article
International Journal of Molecular Sciences, 2021, 22 (2), pp.745. ⟨10.3390/ijms22020745⟩
identifiant
hal-02935915
Resume_court
Phytoplasmas inhabit phloem sieve elements and cause abnormal growth and altered sugar partitioning. .....
typdoc
Journal articles
DOI
DOI : 10.3390/ijms22020745
pubmedId
Pubmed icone : 33451049
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02935915/file/2021-Marco-International_Journal_of_Molecular_Sciences.pdf BibTex
titre
Error rate control for classification rules in multiclass mixture models
auteur
Tristan Mary-Huard, Vittorio Perduca, Marie-Laure Martin-Magniette, Gilles Blanchard
article
The international journal of biostatistics, 2021, 18 (2), pp.381-396. ⟨10.1515/ijb-2020-0105⟩
identifiant
hal-03357461
Resume_court
In the context of finite mixture models one considers the problem of classifying as many observation .....
typdoc
Journal articles
DOI
DOI : 10.1515/ijb-2020-0105
pubmedId
Pubmed icone : 34845884
audience
International
Accès au texte intégral et bibtex
https://universite-paris-saclay.hal.science/hal-03357461/file/IJB_MaryHuard.pdf BibTex

Conference papers

titre
Mixture models as a useful tool for identifying co-expressed genes from RNA-seq data
auteur
Andrea Rau, Antoine Godichon-Baggioni, Gilles Celeux, Marie-Laure Martin-Magniette, Cathy Maugis
article
MiMo Workshop on mixture models, Apr 2021, Online, France
identifiant
hal-04173238
typdoc
Conference papers
audience
National
Accès au bibtex
BibTex

Preprints, Working Papers, ...

titre
Autoregulation dependent and independent mechanisms are responsible for the systemic control of nodule formation by the plant N demand
auteur
Marjorie Pervent, Ilana Lambert, Marc Tauzin, Alicia Karouani, Martha Nigg, Marie-Françoise Jardinaud, Dany Severac, Stefano Colella, Marie-Laure Martin-Magniette, Marc Lepetit
article
2021
identifiant
hal-03277876
Resume_court
Abstract In legumes interacting with rhizobia the formation of symbiotic organs responsible for the .....
typdoc
Preprints, Working Papers, ...
DOI
DOI : 10.1101/2021.02.03.429583
Accès au bibtex
BibTex

2020

Journal articles

titre
DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models
auteur
Ilana Lambert, Christine Paysant-Le Roux, Stefano Colella, Marie-Laure Martin-Magniette
article
Plant Methods, 2020, 16 (1), ⟨10.1186/s13007-020-00611-7⟩
identifiant
hal-02921433
Resume_court
Background: RNAseq is nowadays the method of choice for transcriptome analysis. In the last decades, .....
typdoc
Journal articles
DOI
DOI : 10.1186/s13007-020-00611-7
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02921433/file/document.pdf BibTex
titre
Gene expression predictions and networks in natural populations supports the omnigenic theory
auteur
Aurélien Chateigner, Marie-Claude Lesage-Descauses, Odile Rogier, Véronique Jorge, Jean-Charles Leplé, Véronique Brunaud, Christine Paysant-Le Roux, Ludivine Soubigou-Taconnat, Marie-Laure Martin-Magniette, Léopoldo Sanchez, Vincent Segura
article
BMC Genomics, 2020, 21 (1), pp.1-16. ⟨10.1186/s12864-020-06809-2⟩
identifiant
hal-02902844
Resume_court
Background: Recent literature on the differential role of genes within networks distinguishes core f .....
typdoc
Journal articles
DOI
DOI : 10.1186/s12864-020-06809-2
pubmedId
Pubmed icone : 32571208
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02902844/file/2020_Chateignier_BMC.pdf BibTex
titre
Identification of a Transcriptomic Prognostic Signature by Machine Learning Using a Combination of Small Cohorts of Prostate Cancer
auteur
Benjamin Vittrant, Mickael Leclercq, Marie-Laure Martin-Magniette, Colin Collins, Alain Bergeron, Yves Fradet, Arnaud Droit
article
Frontiers in Genetics, 2020, 11, ⟨10.3389/fgene.2020.550894⟩
identifiant
hal-03269716
Resume_court
Determining which treatment to provide to men with prostate cancer (PCa) is a major challenge for cl .....
typdoc
Journal articles
DOI
DOI : 10.3389/fgene.2020.550894
pubmedId
Pubmed icone : 33324443
audience
International
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titre
Responses of mature symbiotic nodules to the whole-plant systemic nitrogen signaling
auteur
Ilana Lambert, Marjorie Pervent, Antoine Le Quéré, Gilles Clement, Marc Tauzin, Dany Severac, Claire Benezech, Pascal Tillard, Marie-Laure Martin-Magniette, Stefano Colella, Marc Lepetit
article
Journal of Experimental Botany, 2020, 71 (16), pp.5039-5052. ⟨10.1093/jxb/eraa221⟩
identifiant
hal-02921428
Resume_court
In symbiotic root nodules of legumes, terminally differentiated rhizobia fix atmospheric N 2 produci .....
typdoc
Journal articles
DOI
DOI : 10.1093/jxb/eraa221
pubmedId
Pubmed icone : 32386062
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02921428/file/eraa221.pdf BibTex
titre
Immediate targets of ETTIN suggest a key role for pectin methylesterase inhibitors in the control of Arabidopsis gynecium development
auteur
Amélie Andres Robin, Mathieu C Reymond, Géraldine Brunoud, Martin-Magniette Marie-Laure, Françoise Moneger, C.P. Scutt
article
Plant Signaling and Behavior, 2020, 15 (7), pp.1771937. ⟨10.1080/15592324.2020.1771937⟩
identifiant
hal-03068443
Resume_court
The control of gynecium development in Arabidopsis thaliana by the auxin response factor ETTIN (ETT) .....
typdoc
Journal articles
DOI
DOI : 10.1080/15592324.2020.1771937
pubmedId
Pubmed icone : 32498600
audience
International
Accès au texte intégral et bibtex
https://hal.science/hal-03068443/file/Paper%20HAL.pdf BibTex
titre
Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation
auteur
Thomas Blein, Coline Balzergue, Thomas Roulé, Marc Gabriel, Laetitia Scalisi, Tracy François, Céline Sorin, Aurélie Christ, Christian Godon, Etienne Delannoy, Marie-Laure Martin-Magniette, Laurent Nussaume, Caroline Hartmann, Daniel Gautheret, Thierry Desnos, Martin Crespi
article
Plant Physiology, 2020, 183 (3), pp.1058-1072. ⟨10.1104/pp.20.00446⟩
identifiant
cea-02962421
Resume_court
Thousands of lncRNAs with ecotype-specific expression, including two that likely regulate primary ro .....
typdoc
Journal articles
DOI
DOI : 10.1104/pp.20.00446
pubmedId
Pubmed icone : 32404413
audience
International
Accès au texte intégral et bibtex
https://cea.hal.science/cea-02962421/file/579656v1.full.pdf BibTex
titre
Omics data reveal putative regulators of einkorn grain protein composition under sulfur deficiency
auteur
Titouan Bonnot, Pierre Martre, Victor Hatte, Mireille Dardevet, Philippe Leroy, Camille Benard, Natalia Falagan, Marie-Laure Martin-Magniette, Catherine Deborde, Annick Moing, Yves Gibon, Marie Pailloux, Emmanuelle Bancel, Catherine Ravel
article
Plant Physiology, 2020, 183 (2), pp.501-516. ⟨10.1104/pp.19.00842⟩
identifiant
hal-02553742
Resume_court
Understanding the molecular mechanisms controlling the accumulation of grain storage proteins in res .....
typdoc
Journal articles
DOI
DOI : 10.1104/pp.19.00842
pubmedId
Pubmed icone : 32295821
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02553742/file/LEPSE_2020_MARTRES_PLANT_PHYSIOLOGY_CC-BY_Omics_data_reveals_putative_regulators_of_einkorn_grain.pdf BibTex
titre
The Consequences of a Disruption in Cyto-Nuclear Coadaptation on the Molecular Response to a Nitrate Starvation in Arabidopsis
auteur
Fabien Chardon, Gwendal Cueff, Etienne Delannoy, Fabien Aubé, Aurélia Lornac, Magali Bedu, Françoise Gilard, Stéphanie Pateyron, Hélène Rogniaux, Audrey Gargaros, Hakim Mireau, Loïc Rajjou, Marie-Laure Martin-Magniette, Francoise Budar
article
Plants, 2020, 9 (5), pp.573. ⟨10.3390/plants9050573⟩
identifiant
hal-02959209
Resume_court
Mitochondria and chloroplasts are important actors in the plant nutritional efficiency. So, it could .....
typdoc
Journal articles
DOI
DOI : 10.3390/plants9050573
pubmedId
Pubmed icone : 32369924
audience
International
Accès au texte intégral et bibtex
https://hal.science/hal-02959209/file/plants-09-00573-v2.pdf BibTex
titre
Immune-focused multi-omics analysis of prostate cancer: leukocyte Ig-Like receptors are associated with disease progression
auteur
Benjamin Vittrant, Alain Bergeron, Oscar Eduardo Molina, Mickael Leclercq, Xavier-Philippe Légaré, Hélène Hovington, Valérie Picard, Marie-Laure Martin-Magniette, Julie Livingstone, Paul Boutros, Colin Collins, Yves Fradet, Arnaud Droit
article
OncoImmunology, 2020, 9 (1), pp.1851950. ⟨10.1080/2162402X.2020.1851950⟩
identifiant
hal-03219229
Resume_court
Prostate cancer (PCa) immunotherapy has shown limited efficacy so far, even in advanced-stage cancer .....
typdoc
Journal articles
DOI
DOI : 10.1080/2162402X.2020.1851950
pubmedId
Pubmed icone : 33299664
audience
International
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Poster communications

titre
Development of a Snakemake “framework/templates” to study the whole-genome transcriptional profiling from a blood-flesh trait (bf) and non blood-flesh trait (non-bf) cultivars in Prunus persica
auteur
Laure Heurtevin, Thierry Pascal, Bénédicte Quilot-Turion, Martin-Magniette Marie-Laure, Jacques Lagnel
article
JOBIM 2020 Journées Ouvertes de Biologie, Informatique et Mathématique, Jun 2020, Montpellier, France. ⟨10.13140/RG.2.2.15060.63366⟩
identifiant
hal-03267808
typdoc
Poster communications
DOI
DOI : 10.13140/RG.2.2.15060.63366
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-03267808/file/jobim2020_poster_188.pdf BibTex

2019

Journal articles

titre
A systems biology approach uncovers a gene co-expression network associated with cell wall degradability in maize
auteur
Clément Cuello, Aurélie Baldy, Véronique Brunaud, Johann Joets, Etienne Delannoy, Marie-Pierre Jacquemot, Lucy Botran, Yves Griveau, Cécile Guichard, Ludivine Soubigou-Taconnat, Marie-Laure Martin-Magniette, Philippe Leroy, Valérie Méchin, Matthieu Reymond, Sylvie Coursol
article
PLoS ONE, 2019, 14 (12), pp.e0227011. ⟨10.1371/journal.pone.0227011⟩
identifiant
hal-02429157
Resume_court
Understanding the mechanisms triggering variation of cell wall degradability is a prerequisite to im .....
typdoc
Journal articles
DOI
DOI : 10.1371/journal.pone.0227011
pubmedId
Pubmed icone : 31891625
audience
International
Accès au texte intégral et bibtex
https://hal.science/hal-02429157/file/2019_Cuello_PlosOne_0227011_1.pdf BibTex
titre
In situ transcriptomic and metabolomic study of the loss of photosynthesis in the leaves of mixotrophic plants exploiting fungi
auteur
Félix Lallemand, Marie-Laure Martin-Magniette, François Gilard, Bertrand Gakière, Alexandra Launay-Avon, Etienne Delannoy, Marc-André Selosse
article
Plant Journal, 2019, 98 (5), pp.826-841. ⟨10.1111/tpj.14276⟩
identifiant
hal-02617745
Resume_court
Mycoheterotrophic plants have lost photosynthesis and obtain carbon through mycorrhizal fungi coloni .....
typdoc
Journal articles
DOI
DOI : 10.1111/tpj.14276
pubmedId
Pubmed icone : 30735596
audience
International
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titre
Large-Scale Automatic Feature Selection for Biomarker Discovery in High-Dimensional OMICs Data
auteur
Mickael Leclercq, Benjamin Vittrant, Marie-Laure Magniette, Marie Pier Scott Boyer, Olivier Perin, Alain Bergeron, Yves Fradet, Arnaud Droit
article
Frontiers in Genetics, 2019, 10, pp.452. ⟨10.3389/fgene.2019.00452⟩
identifiant
hal-02623625
Resume_court
The identification of biomarker signatures in omics molecular profiling is usually performed to pred .....
typdoc
Journal articles
DOI
DOI : 10.3389/fgene.2019.00452
pubmedId
Pubmed icone : 31156708
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02623625/file/2019_Leclercq_Frontiers%20in%20Genetics_1.pdf BibTex
titre
Novel cytonuclear combinations modify Arabidopsis thaliana seed physiology and vigor
auteur
Clément Boussardon, Marie-Laure Martin-Magniette, Béatrice Godin, Abdelilah Benamar, Benjamin Vittrant, Sylvie Citerne, Tristan Mary-Huard, David Macherel, Loïc Rajjou, Françoise Budar
article
Frontiers in Plant Science, 2019, 10, pp.32. ⟨10.3389/fpls.2019.00032⟩
identifiant
hal-02557423
Resume_court
Dormancy and germination vigor are complex traits of primary importance for adaptation and agricultu .....
typdoc
Journal articles
DOI
DOI : 10.3389/fpls.2019.00032
pubmedId
Pubmed icone : 30804952
audience
International
Accès au texte intégral et bibtex
https://univ-angers.hal.science/hal-02557423/file/2019_Macherel_Front.Plant.Sci_1.pdf BibTex
titre
Sampling uncertainty versus method uncertainty: A general framework with applications to omics biomarker selection
auteur
Simon Klau, Marie-Laure Martin-Magniette, Anne-Laure Boulesteix, Sabine Hoffmann
article
Biometrical Journal, 2019, 62 (3), pp.670-687. ⟨10.1002/bimj.201800309⟩
identifiant
hal-02618372
Resume_court
Uncertainty is a crucial issue in statistics which can be considered from different points of view. .....
typdoc
Journal articles
DOI
DOI : 10.1002/bimj.201800309
pubmedId
Pubmed icone : 31099917
audience
International
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Conference papers

titre
PLMdetect: a bioinformatic approach to identify cis-regulatory motifs in promoters of Plant genomes.
auteur
Julien Rozière, Cecile C. Guichard, Margot Correa, Sylvie Coursol, Marie-Laure Martin-Magniette, Veronique Brunaud
article
2nd International Conference on Plant & Molecular Biology, Oct 2019, Amsterdam, Netherlands
identifiant
hal-02955246
typdoc
Conference papers
audience
International
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Poster communications

titre
Transcriptome analysis of a chilling tolerance strategy in European maize dent germplasm.
auteur
Catalina Durand Garzon, Hélène Sellier-Richard, Jan Drouaud, Ludivine Soubigou-Taconnat, Veronique Brunaud, Marie-Laure Martin-Magniette, Catherine Rayon, Laurent Gutierrez, Sylvie Coursol, Catherine Giauffret
article
XXIVth EUCARPIA Maize and Sorghum Conference. Integrating quantitative and molecular genetics to develop new breeding methods in maize and sorghum., Oct 2019, Freising, Germany
identifiant
hal-02955226
Resume_court
Maize has become an extensively cultivated crop in high latitudes like Northern Europe thanks to his .....
typdoc
Poster communications
audience
International
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Preprints, Working Papers, ...

titre
Two ecotype-related long non-coding RNAs in the environmental control of root growth
auteur
Thomas Blein, Coline Balzergue, Thomas Roulé, Marc Gabriel, Laetitia Scalisi, Céline Sorin, Aurélie Christ, Etienne Delannoy, Marie-Laure Magniette Martin-Magniette, Laurent Nussaume, Caroline Hartmann, Daniel Gautheret, Thierry Desnos, Martin Crespi
article
2019
identifiant
hal-02399291
Resume_court
Background Root architecture varies widely between species and even between ecotypes of the same spe .....
typdoc
Preprints, Working Papers, ...
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titre
The relationship between gene co-expression network connectivity and phenotypic prediction sheds light at the core of the omnigenic theory
auteur
Aurélien Chateigner, Marie-Claude Lesage Descauses, Odile Rogier, Véronique Jorge, Jean-Charles Leplé, Véronique Brunaud, Christine Paysant-Le Roux, Ludivine Soubigou-Taconnat, Marie-Laure Martin-Magniette, Leopoldo Sanchez, Vincent Segura
article
2019
identifiant
hal-02788812
Resume_court
Recent literature on the differential role of genes within networks, including the omnigenic model, .....
typdoc
Preprints, Working Papers, ...
DOI
DOI : 10.1101/523365
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02788812/file/2019_Chateigner_BioRxiv_preprint_523365_full_1.pdf BibTex

2018

Journal articles

titre
Genetic variability of the phloem sap metabolite content of maize (Zea mays L.) during the kernel-filling period (vol 252, pg 347, 2016)
auteur
Zhazira Yesbergenova-Cuny, Sylvie Dinant, Marie-Laure Martin-Magniette, Isabelle Quillere, Patrick P. Armengaud, Priscilla Monfalet, Peter J. Lea, Bertrand Hirel
article
Plant Science, 2018, 272, pp.207-207. ⟨10.1016/j.plantsci.2018.04.022⟩
identifiant
hal-02618059
typdoc
Journal articles
DOI
DOI : 10.1016/j.plantsci.2018.04.022
pubmedId
Pubmed icone : 29807592
audience
International
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titre
Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat
auteur
Elodie Rey, Michaël M. Abrouk, Gabriel Keeble-Gagnère, Miroslava Karafiatova, Jan Vrána, Sandrine Balzergue, Ludivine Soubigou-Taconnat, Véronique Brunaud, Marie-Laure Magniette, Takashi R. Endo, Jan Bartos, Rudi Appels, Jaroslav Dolezel
article
Plant Biotechnology Journal, 2018, 16 (10), pp.1767-1777. ⟨10.1111/pbi.12913⟩
identifiant
hal-02621747
Resume_court
Despite a long history, the production of useful alien introgression lines in wheat remains difficul .....
typdoc
Journal articles
DOI
DOI : 10.1111/pbi.12913
pubmedId
Pubmed icone : 29510004
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02621747/file/2018_Rey_Plant_Biotechnology_Journal_1.pdf BibTex
titre
Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo
auteur
Kaori Sakai, Ludivine Taconnat, Néro Borrega, Jennifer Yansouni, Véronique Brunaud, Christine Paysant-Le Roux, Etienne Delannoy, Marie-Laure Martin Magniette, Loic Lepiniec, Jean Denis Faure, Sandrine Balzergue, Bertrand Dubreucq
article
Plant Methods, 2018, 14, pp.10. ⟨10.1186/s13007-018-0275-x⟩
identifiant
hal-02625394
Resume_court
Background: Genome- wide characterization of tissue- or cell-specific gene expression is a recurrent .....
typdoc
Journal articles
DOI
DOI : 10.1186/s13007-018-0275-x
pubmedId
Pubmed icone : 29434651
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02625394/file/2018_Sakai_Plant%20Methods_1.pdf BibTex
titre
Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways during ethephon stimulation and consequent Tapping Panel Dryness
auteur
Pascal Montoro, Shuangyang Wu, Bénédicte Favreau, Eva Herlinawati, Cécile Labrune, Marie-Laure Magniette, Stéphanie Pointet, Maryannick Rio, Julie Leclercq, Sigit Ismawanto, - Kuswanhadi
article
Scientific Reports, 2018, 8, pp.8483. ⟨10.1038/s41598-018-26854-y⟩
identifiant
hal-02624945
Resume_court
Tapping Panel Dryness (TPD) affects latex production in Hevea brasiliensis. This physiological syndr .....
typdoc
Journal articles
DOI
DOI : 10.1038/s41598-018-26854-y
pubmedId
Pubmed icone : 29855601
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02624945/file/Publis18-agap-015_montoro_transcriptome_1.pdf BibTex
titre
Nitrogen limitation alters the response of specific genes to biotic stress
auteur
Mahsa Farjad, Martine Rigault, Stephanie Pateyron, Marie-Laure Martin-Magniette, Annemarie Krapp, Christian Meyer, Mathilde Fagard
article
International Journal of Molecular Sciences, 2018, 19 (11), pp.3364. ⟨10.3390/ijms19113364⟩
identifiant
hal-02625219
Resume_court
In their natural environment, plants are generally confronted with multiple co-occurring stresses. H .....
typdoc
Journal articles
DOI
DOI : 10.3390/ijms19113364
pubmedId
Pubmed icone : 30373239
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02625219/file/2018_Farjad_International%20Journal%20of%20Molecular%20Sciences_1.pdf BibTex

Conference papers

titre
Deciphering variations of phloem and xylem sap metabolite profiles in response to N availability in Arabidopsis accessions
auteur
Sylvie Dinant, Federica de Marco, Nelly Wolff, Rozenn Le Hir, Catherine Bellini, Françoise Vilaine, Priscilla Montfalet, Anne Marmagne, Fabien Chardon, Marie-Laure Magniette
article
Symposium Plant Signaling and Development, Dec 2018, Daegu, South Korea
identifiant
hal-02734019
typdoc
Conference papers
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02734019/file/2018_Dinant_Signalling%20and%20Development%20in%20Plants_Abstract_1.pdf https://hal.inrae.fr/hal-02734019/file/2018_Dinant_Signalling%20and%20Development%20in%20Plants_Abstract_2.docx BibTex

Poster communications

titre
Deciphering molecular origin and functional impact of structural variation in maize through genome sequences comparison and integrative analysis of genetic variation, transcriptome and phenotype data
auteur
Johann J. Joets, Sylvie Coursol, Olivier Turc, Llorenç Cabrera-Bosquet, Marie-Laure Magniette Martin-Magniette, Silvio Salvi, Anthony Venon, Sandrine Chaignon, Jérôme Laplaige, Ghislaine Gendrot, Carine Palaffre, Stéphanie Castel, Stéphanie Pateyron, Véronique Brunaud, Ludivine Soubigou-Taconnat, Fabrice Dumas, William Marande, Agnès Rousselet, Harry Belcram, Alain Charcosset, Francois Tardieu, Claude Welcker, Peter Rogowsky, Clémentine Vitte
article
First International Plant Systems Biology meeting, Sep 2018, Roscoff, France
identifiant
hal-02955192
typdoc
Poster communications
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02955192/file/iPSB2018_Abstract2_Coursol_Sylvie_20180504.pdf BibTex
titre
MYB31 triggers water stress memory responses in maize
auteur
Laetitia Virlouvet, Sandrine Chaignon, Valérie Méchin, Marie-Pierre Jacquemot, Llorenç Cabrera-Bosquet, Thierry Balliau, Charlotte Henriet, Sandrine Balzergue, Etienne Delannoy, Johann Joets, Marie-Laure Magniette Martin-Magniette, Claude Welcker, Michel Zivy, Christophe Sallaud, Francois Tardieu, Marie Javelle, Sylvie Coursol
article
First International Plant Systems Biology meeting, Sep 2018, Roscoff, France
identifiant
hal-02955165
Resume_court
Water deficit directly impacts the ability of plants to intercept and convert light into biomass. Be .....
typdoc
Poster communications
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02955165/file/iPSB2018_Abstract_Coursol_Sylvie_20180503.pdf BibTex
titre
Deciphering molecular origin and functional impact of structural variation in maize through genome sequences comparison and integrative analysis of genetic variation, transcriptome and phenotype data
auteur
Johann Joets, Sylvie Coursol, Olivier Turc, Llorenç Cabrera Bosquet, Marie-Laure Martin-Magniette, Silvio Salvi, Anthony Venon, Sandrine Chaignon, Jérôme Laplaige, Ghislaine Gendrot, Carine Palaffre, Stéphanie Castel, Stephanie Pateyron, Véronique Brunaud, Ludivine Taconnat-Soubigou, Fabrice Dumas, William Marande, Agnes Rousselet, Harry Belcram, Alain Charcosset, Francois Tardieu, Claude Welcker, Peter Rogowsky, Clémentine Vitte
article
60. Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 2018
identifiant
hal-02738241
Resume_court
Structural variation (SV) is a major driver of plant adaptation and genome evolution. It originates .....
typdoc
Poster communications
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02738241/file/Joets-MGC-2018_1.pdf BibTex

2017

Conference papers

titre
Metabolic profile of phloem sap of tomato plants in response to phytoplasma infection
auteur
Federica de Marco, Françoise Vilaine, Marie-Laure Magniette, C. Jonard, Sandrine Eveillard, Brigitte Batailler, Rozenn Le Hir, Sylvie Dinant
article
SMMAP 2017 (Spectrométrie de Masse, Métabolomique et Analyse Protéomique), Société Française de Spectrométrie de Masse (SFSM). FRA.; Réseau Francophone de Métabolomique et Fluxomique. FRA.; Société Française d'Electrophorèse et d'Analyse Protéomique (SFEAP). FRA., Oct 2017, Marne-la-Vallée, French Guiana
identifiant
hal-01607386
Resume_court
In higher plants, phloem and xylem are the vascular tissues that permit the transport of photosyntha .....
typdoc
Conference papers
audience
Not specified
Accès au bibtex
BibTex
titre
MYB31 triggers water stress memory responses in maize
auteur
Sandrine Chaignon, Laetitia Virlouvet, Marie Javelle, Valérie Méchin, Marie-Pierre Jacquemot, Thierry Balliau, Charlotte Henriet, Llorenç Cabrera-Bosquet, Sandrine Balzergue, Etienne Delannoy, Johann J. Joets, Michel Zivy, Marie-Laure Magniette Martin-Magniette, Claude Welcker, Christophe Sallaud, Francois Tardieu, Sylvie Coursol
article
11es Journées du Réseau Français des parois, Jun 2017, Orléans, France
identifiant
hal-02955034
Resume_court
Water deficit directly impacts the ability of plants to intercept and convert light into biomass. Be .....
typdoc
Conference papers
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02955034/file/170619_Fascicule_JRFP_VF_C29.pdf BibTex

Book sections

titre
Clustering of co-expressed genes
auteur
Andrea Rau, Marie-Laure Magniette, Cathy Maugis-Rabusseau
article
Model Choice and Model Aggregation, Editions Technip, 372 p., 2017, 9782710811770
identifiant
hal-02789928
typdoc
Book sections
audience
International
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BibTex

Poster communications

titre
Prediction of black poplar biofuel production: disentangling omnigenics with transcriptomics
auteur
Aurélien Chateigner, Odile Rogier, Véronique Jorge, Jean-Charles Leplé, Veronique Brunaud, Christine Paysant Le Roux, Ludivine Soubigou-Taconnat, Marie-Laure Magniette, Leopoldo Sanchez Rodriguez, Vincent Segura
article
Detecting the Genomic Signal of Polygenic Adaptation and the Role of Epistasis in Evolution, Aug 2017, Zurich, Switzerland. , 45 p., 2017, Symposium: Detecting the Genomic Signal of Polygenic Adaptation and the Role of Epistasis in Evolution
identifiant
hal-01607166
Resume_court
Prediction of black poplar biofuel production: disentangling omnigenics with transcriptomics. Detect .....
typdoc
Poster communications
audience
Not specified
Accès au bibtex
BibTex

2016

Journal articles

titre
Genetic variability of the phloem sap metabolite content of maize ([i]Zea mays[/i] L.) during the kernel-filling period
auteur
Zhazira Yesbergenova-Cuny, Sylvie Dinant, Marie-Laure Magniette, Isabelle Quillere, Patrick Armengaud, Priscilla Monfalet, Peter J. Lea, Bertrand Hirel
article
Plant Science, 2016, 252, pp.347-357. ⟨10.1016/j.plantsci.2016.08.007⟩
identifiant
hal-01363555
Resume_court
Using a metabolomic approach, we have quantified the metabolite composition of the phloem sap exudat .....
typdoc
Journal articles
DOI
DOI : 10.1016/j.plantsci.2016.08.007
pubmedId
Pubmed icone : 27717471
audience
Not specified
Accès au bibtex
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titre
Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis
auteur
Guillem Rigaill, Sandrine Balzergue, Véronique Brunaud, Eddy Blondet, Andrea Rau, Odile Rogier, José Caius, Cathy Maugis Rabusseau, Ludivine Soubigou-Taconnat, Sébastien Aubourg, Claire Lurin, Marie-Laure Magniette, Etienne Delannoy
article
Briefings in Bioinformatics, 2016, 19 (1), pp.65-76. ⟨10.1093/bib/bbw092⟩
identifiant
hal-01595551
Resume_court
Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis
typdoc
Journal articles
DOI
DOI : 10.1093/bib/bbw092
pubmedId
Pubmed icone : 27742662
audience
Not specified
Accès au bibtex
BibTex
titre
Altered DNA methylation associated with an abnormal liver phenotype in a cattle model with a high incidence of perinatal pathologies
auteur
Hélène Kiefer, Luc Jouneau, Evelyne E. Campion, Delphine Rousseau-Ralliard, Thibaut Larcher, Marie-Laure Martin Magniette, Sandrine Balzergue, Mireille Ledevin, Audrey Prézelin, Pascale Chavatte-Palmer, Yvan Heyman, Christophe Richard, Daniel D. Le Bourhis, Jean-Paul Renard, Hélène Jammes
article
Scientific Reports, 2016, 6, pp.38869. ⟨10.1038/srep38869⟩
identifiant
hal-02633915
Resume_court
Cloning enables the generation of both clinically normal and pathological individuals from the same .....
typdoc
Journal articles
DOI
DOI : 10.1038/srep38869
pubmedId
Pubmed icone : 27958319
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02633915/file/2016_kiefer_Sci%20reports_1.pdf BibTex
titre
Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field
auteur
Fabrice Roux, Tristan Mary-Huard, Elise Barillot, Estelle Wenes, Lucy Botran, Stéphanie S. Durand, Romain Villoutreix, Martin-Magniette Marie-Laure, Christine C. Camilleri, Francoise Budar
article
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (13), pp.3687-3682. ⟨10.1073/pnas.1520687113⟩
identifiant
hal-01294000
Resume_court
Although the contribution of cytonuclear interactions to plant fitness variation is relatively well .....
typdoc
Journal articles
DOI
DOI : 10.1073/pnas.1520687113
pubmedId
Pubmed icone : 26979961
audience
International
Accès au texte intégral et bibtex
https://hal.science/hal-01294000/file/2016-Roux-PNAS_1.pdf BibTex

Conference papers

titre
Genetic variability of the phloem sap composition of maize (Zea mays.l) during the grain filling period
auteur
Zhazira Yesbergenova-Cuny, Sylvie Dinant, Marie-Laure Magniette, Isabelle Quillere, R. Canas, Patrick Armengaud, Priscilla Monfalet, P. J. Lea, Bertrand Hirel
article
EMBO Conference: The nitrogen nutrition of plants, EMBO. DEU., Aug 2016, Montpellier, France
identifiant
hal-01602383
Resume_court
Maize is a major food and energy crop which is widely cultivated worldwide. Nevertheless, our knowle .....
typdoc
Conference papers
audience
Not specified
Accès au bibtex
BibTex
titre
How does natural variation impact the metabolite profile of phloem and xylem saps in Arabidopsis thaliana?
auteur
Sylvie Dinant, Marie-Laure Magniette, Fabien Chardon, Catherine Bellini, Anne Marmagne, Priscilla Monfalet, Françoise Vilaine, Rozenn Le Hir
article
11. Colloque de la SFBV, Société Française de Biologie Végétale (SFBV). FRA., Jul 2016, Angers, France
identifiant
hal-01602247
Resume_court
An important step for land colonization by plants has been the emergence of the vascular tissues, wh .....
typdoc
Conference papers
audience
Not specified
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BibTex

Poster communications

titre
Transcriptomic regulation in pepper during the interaction with Phytophthora capsici
auteur
Gaëtan Maillot, Emmanuel Szadkowski, Anne Massire, Jean-Paul Bouchet, Veronique Brunaud, Marie-Laure Martin-Magniette, Sandrine Balzergue, Guillem Rigaill, Kurt Lamour, Véronique Lefebvre
article
16. Eucarpia Capsicum and Eggplant Meeting, Sep 2016, Kecskemét, Hungary. 2016
identifiant
hal-02799453
typdoc
Poster communications
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02799453/file/Maillot%20Eucarpia%20Hungary%202016%20poster_1.pdf BibTex
titre
Transcriptomic regulation in pepper during the interaction with Phytophthora capsici.
auteur
Gaëtan Maillot, Emmanuel Szadkowski, Anne Massire, Jean-Paul Bouchet, Veronique Brunaud, Martin-Magniette Marie-Laure, Sandrine Balzergue, Guillem Rigaill, Kurt Lamour, Véronique Lefebvre
article
16th Eucarpia Capsicum and Eggplant Meeting, Sep 2016, Kecskemét, Hungary
identifiant
hal-03551784
typdoc
Poster communications
audience
International
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BibTex
titre
CORGI : Co-regulated gene investigator.
auteur
Sandra Pelletier, Sylvain Gaillard, Sebastien Aubourg, Martin-Magniette Marie-Laure, Veronique Brunaud, Jean-Philippe Tamby, H. Pereira, Herman Höfte
article
Journées Ouvertes Biologie Informatique et Mathématiques (JOBIM’2016), Jun 2016, Lyon, France
identifiant
hal-03104271
typdoc
Poster communications
audience
International
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BibTex
titre
A systems biology approach for identifying candidate genes involved in the natural variability of biomass yield and chemical properties in black poplar
auteur
Vincent Segura, Marie-Claude Lesage Descauses, Jean-Paul Charpentier, Kévin Kinkel, Claire Mandin, Kévin Ader, Nassim Belmokhtar, Nathalie Boizot, Corinne Buret, Annabelle Dejardin, Vanina Guérin, Véronique Jorge, Celine Ridel, Françoise Laurans, Veronique Laine-Prade, Leopoldo Sanchez Rodriguez, Catherine Bastien, Mesfin Nigussie Gebreselassie, Jose-Luis Almeida Falcon, Guillaume Bodineau, Patrick Poursat, Odile Rogier, José Caius, Ludivine Soubigou-Taconnat, Sandrine Balzergue, Veronique Brunaud, Marie-Laure Magniette, Jean-Charles Leplé
article
IUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France. , 2016, IUFRO Genomics and Forest Tree Genetics. Book of Abstract
identifiant
hal-01456004
Resume_court
Lignocellulosic biomass is a renewable resource of interest for biorefinery. However, current poplar .....
typdoc
Poster communications
audience
Not specified
Accès au texte intégral et bibtex
https://hal.science/hal-01456004/file/2016_IUFRO_Abstract_Book_1.pdf BibTex
titre
Exploring the impact of ZmMYB31 overexpression in maize under contrasted soil water regimes
auteur
Laetitia Virlouvet, Charlotte Henriet, Marie-Pierre Jacquemot, Sandrine Chaignon, Thierry Balliau, Marie Javelle, Christophe Sallaud, Sandrine Balzergue, Marie-Laure Magniette Martin-Magniette, Johann Joets, Francois Tardieu, Claude Welcker, Michel Zivy, Valérie Méchin, Sylvie Coursol
article
WG2 meeting of the COST FA1306. Driving integrative cell phenotyping through “omics”., Feb 2016, Versailles, France
identifiant
hal-02955098
Resume_court
Water deficit directly impacts the ability of plants to intercept and convert light into biomass. Be .....
typdoc
Poster communications
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02955098/file/Abstract_Coursol_WG2%20Versailles%20COST%20FA1306.pdf BibTex

2015

Journal articles

titre
Co-expression analysis of high-throughput transcriptome sequencing data with Poisson mixture models
auteur
Andrea Rau, Cathy Maugis-Rabusseau, Marie-Laure Magniette, Gilles Celeux
article
Bioinformatics, 2015, 31 (9), pp.1420-1427. ⟨10.1093/bioinformatics/btu845⟩
identifiant
hal-01108821
Resume_court
In recent years, gene expression studies have increasingly made use of high-throughput sequencing te .....
typdoc
Journal articles
DOI
DOI : 10.1093/bioinformatics/btu845
pubmedId
Pubmed icone : 25563332
audience
International
Accès au bibtex
BibTex

Conference papers

titre
An aberrant age of liver DNA methylation is associated with cloning-induced pathologies
auteur
Hélène Kiefer, Luc Jouneau, Evelyne E. Campion, Delphine Rousseau-Ralliard, Thibaut T. Larcher, Marie-Laure Martin-Magniette, Sandrine Balzergue, Mireille Ledevin, Audrey Prézelin, Pascale Chavatte-Palmer, Yvan Heyman, Christophe Richard, Daniel D. Le Bourhis, Jean-Paul Renard, Hélène Jammes
article
Conférence Jacques Monod, DNA methylation and demethylation, Centre National de la Recherche Scientifique (CNRS). FRA., Nov 2015, Roscoff, France
identifiant
hal-02797595
Resume_court
It is postulated that the developmental defects frequently observed in somalie clones arise from ina .....
typdoc
Conference papers
audience
National
Accès au bibtex
BibTex
titre
Toward a characterization of the pepper host resistance effect on the gene expression of the pathogenic Phytophthora capsici
auteur
Gaëtan Maillot, Anne Massire, Jean-Paul Bouchet, Véronique Brunaud, Marie-Laure Martin-Magniette, Sandrine Balzergue, Kurt Lamour, Véronique Lefebvre
article
12. Solanaceae Conference, Oct 2015, Bordeaux, France
identifiant
hal-02795452
typdoc
Conference papers
audience
National
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02795452/file/Maillot_Lefebvre%202015%2012th%20Solanaceae%20Conference%2062_1.pdf BibTex
titre
RNA-Seq study of host resistance and isolate aggressiveness on gene expression in [i]Phytophthora capsici[/i]
auteur
Gaëtan Maillot, Anne Massire, Jean-Paul Bouchet, Veronique Brunaud, Marie-Laure Magniette, Sandrine Balzergue, Kurt Lamour, Véronique Lefebvre
article
8. Effectome Meeting, Sep 2015, Lauret, France
identifiant
hal-01210021
Resume_court
absent
typdoc
Conference papers
audience
Not specified
Accès au texte intégral et bibtex
https://hal.science/hal-01210021/file/Maillot%202015%20effectome%20abstract_1.pdf https://hal.science/hal-01210021/file/Maillot%202015%20effectome%20abstract_2.docx BibTex
titre
Diversity and Evolution of the Molecular Mechanisms Involved in Nickel Hyperaccumulation in Plants
auteur
Sylvain Merlot, Vanesa Sanchez Garcia de La Torre, Bruno Fogliani, Louis-Charles Brinon, Valérie Burtet-Sarramegna, Clarisse Majorel-Loulergue, Marie-Laure Martin-Magniette, Sandrine Balzergue, Veronique Brunaud, Ludivine Soubigou-Taconnat, Mark M. G. Aarts, Dubiel Alfonso Gonzalez, Rosalina Berazain Iturralde, Claude Grison
article
13th SGA Biennial Meeting on Mineral Resources in a Sustainable World, Centre National de la Recherche Scientifique (CNRS). Nancy, FRA., Aug 2015, Nancy, France. pp.3
identifiant
hal-02741948
Resume_court
Worldwide, more than 450 plant species scattered through 40+ families are known to accumulate >0,1% .....
typdoc
Conference papers
audience
International
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titre
Conséquences tardives de perturbations épigénétiques précoces : exemple des clones bovins
auteur
Hélène Kiefer, Luc Jouneau, Evelyne Campion, Delphine Rousseau-Ralliard, Thibaut Larcher, Marie-Laure Magniette, Sandrine Balzergue, Audrey Prézelin, Pascale Chavatte-Palmer, Yvan Heyman, Christophe Richard, Daniel Le Bourhis, Jean Paul Renard, Hélène Jammes
article
1. Journée de Séminaires du Département Phase sur l'Epigénétique EpiPhase, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Jun 2015, Paris, France
identifiant
hal-01197642
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absent
typdoc
Conference papers
audience
Not specified
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titre
Comparative metabolite profiling of the phloem saps of maize, tomato and Arabidopsis plants
auteur
Federica de Marco, Zhazira Yesbergenova-Cuny, Marie-Laure Magniette, F. Girard, Priscilla Monfalet, Françoise Vilaine, Rozenn Le Hir, Bertrand Hirel, Sylvie Dinant
article
9. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France
identifiant
hal-01602065
Resume_court
In higher plants, two vascular tissues, phloem and xylem, are responsible for the transport of water .....
typdoc
Conference papers
audience
Not specified
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titre
Targets of CUP- SHAPED COTYLEDON transcription factors during leaf development
auteur
Nicolas Arnaud, Beatriz Goncalves, Zakia Tariq, Martin-Magniette Marie-Laure, Patrick Laufs
article
Plant organ growth symposium (POGS), Mar 2015, Ghent, Belgium
identifiant
hal-03758998
typdoc
Conference papers
audience
International
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BibTex
titre
Genome-wide analysis of DNA methylation in clones and nonclones of two different breeds: Holstein and Japanese black
auteur
Hélène Kiefer, M. Kaneda, Luc Jouneau, Evelyne E. Campion, Sandrine Balzergue, Marie-Laure Martin-Magniette, Jean-Paul Renard, T. Nagai, Hélène Jammes
article
41. Annual Conference IETS, International Embryo Transfer Society (IETS). USA., Jan 2015, Versailles, France. ⟨10.1071/RDv27n1Ab19⟩
identifiant
hal-02741067
typdoc
Conference papers
DOI
DOI : 10.1071/RDv27n1Ab19
audience
National
Accès au bibtex
BibTex

2014

Journal articles

titre
Hidden Markov Models with mixtures as emission distributions
auteur
Stevenn Volant, Caroline Bérard, Marie-Laure Martin-Magniette, Stéphane Robin
article
Statistics and Computing, 2014, 24 (4), pp.493-504. ⟨10.1007/s11222-013-9383-7⟩
identifiant
pasteur-02612867
Resume_court
In unsupervised classification, Hidden Markov Models (HMM) are used to account for a neighborhood st .....
typdoc
Journal articles
DOI
DOI : 10.1007/s11222-013-9383-7
audience
International
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titre
Salmonella enterica Flagellin Is Recognized via FLS2 and Activates PAMP-Triggered Immunity in Arabidopsis thaliana
auteur
Ana Victoria Garcia Malervi, Amélie Charrier, Adam Schikora, Jean Bigeard, Stephanie Pateyron, Marie-Ludivine de Tauzia - Moreau, Alexandre Evrard, Axel Mithoefer, Marie-Laure Magniette, Isabelle Payant, Heribert Hirt
article
Molecular Plant, 2014, 7 (4), pp.657 - 674. ⟨10.1093/mp/sst145⟩
identifiant
hal-01197624
Resume_court
Infections with Salmonella enterica belong to the most prominent causes of food poisoning and infect .....
typdoc
Journal articles
DOI
DOI : 10.1093/mp/sst145
audience
Not specified
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titre
Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences
auteur
Nicolas Frei Dit Frey, Anna Victoria Garcia, Jean Bigeard, Rim Zaag, Eduardo Bueso, Marie Garmier, Stephanie S. Pateyron, Marie-Ludivine de Tauzia - Moreau, Veronique V. Brunaud, Sandrine Balzergue, Jean Colcombet, Sebastien S. Aubourg, Marie-Laure Martin-Magniette, Heribert Hirt
article
Genome Biology, 2014, 15 (6), pp.R87. ⟨10.1186/gb-2014-15-6-r87⟩
identifiant
hal-02631808
Resume_court
Background : Mitogen-activated protein kinases (MAPKs) are key regulators of immune responses in ani .....
typdoc
Journal articles
DOI
DOI : 10.1186/gb-2014-15-6-r87
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International
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https://hal.inrae.fr/hal-02631808/file/2014_Frey_Genome%20Biology_1.pdf BibTex
titre
Comparing Model Selection and Regularization Approaches to Variable Selection in Model-Based Clustering
auteur
Gilles Celeux, Marie-Laure Martin-Magniette, Cathy Maugis, Adrian E. Raftery
article
Journal de la Société Française de Statistique, 2014, 155 (2), pp.57-71
identifiant
hal-00943473
Resume_court
We compare two major approaches to variable selection in clustering: model selection and regularizat .....
typdoc
Journal articles
pubmedId
Pubmed icone : 25279246
audience
International
Accès au texte intégral et bibtex
https://inria.hal.science/hal-00943473/file/2014_Celeux_Journal%20de%20la%20soci%C3%A9t%C3%A9%20Fran%C3%A7aise%20de%20Statistique_1.pdf BibTex

2013

Journal articles

titre
MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates
auteur
Caroline Berard, Michael Seifert, Tristan Mary-Huard, Marie-Laure Magniette
article
BMC Bioinformatics, 2013, 14, ⟨10.1186/1471-2105-14-271⟩
identifiant
hal-01190745
Resume_court
Background: Chromatin immunoprecipitation coupled with hybridization to a tiling array (ChIP-chip) i .....
typdoc
Journal articles
DOI
DOI : 10.1186/1471-2105-14-271
audience
Not specified
Accès au texte intégral et bibtex
https://hal.science/hal-01190745/file/2013_B%C3%A9rard_BMC-Bioinformatics_1.pdf BibTex

Conference papers

titre
Cloning disrupts the methylation signatures associated to age in cattle
auteur
Hélène Kiefer, Luc Jouneau, Evelyne Campion, Marie-Laure Martin-Magniette, Sandrine Balzergue, Pascale Chavatte-Palmer, Yvan Heyman, Christophe Richard, Daniel Le Bourhis, Jean Paul Renard, Hélène Jammes
article
Conférence Jacques Monod Méthylation et déméthylation de l'ADN, Centre National de la Recherche Scientifique (CNRS). FRA., Sep 2013, Roscoff, France
identifiant
hal-01019185
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Reprogramming the differentiated cell to totipotency can be obtained following the introduction of i .....
typdoc
Conference papers
audience
Not specified
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titre
Investigation of inter-individual epigenetic variability in bovine clones: a high throughput study
auteur
Hélène Kiefer, Luc Jouneau, Evelyne E. Campion, Marie-Laure Magniette Martin-Magniette, Sandrine Balzergue, Pascale Chavatte-Palmer, Christophe Richard, Daniel D. Le Bourhis, Jean Paul J. P. Renard, Hélène Jammes
article
64. Annual Meeting of the European Federation of Animal Science (EAAP), European Association of Animal Production (EAAP). FRA., Aug 2013, Nantes, France. pp.542
identifiant
hal-01004784
Resume_court
Reprogramming the somalie cel! to totipotency can be obtained following the transfert ofits nucleus .....
typdoc
Conference papers
audience
Not specified
Accès au bibtex
BibTex
titre
Investigation of inter-individual epigenetic variability in bovine clones: A high throughput study
auteur
Hélène Kiefer, Luc Jouneau, Marie-Laure Magniette Martin-Magniette, Sandrine Balzergue, Evelyne E. Campion, Pascale Chavatte-Palmer, Yvan Y. Heyman, Christophe Richard, Daniel D. Le Bourhis, Jean Paul J. P. Renard, Hélène Jammes
article
Annual Conference of the International Embryo Transfer Society, Jan 2013, Hanovre, Germany. pp.173, ⟨10.1071/RDv25n1Ab51⟩
identifiant
hal-01004742
Resume_court
Reprogramming the differentiated cell to totipotency can be achieved following the introduction of i .....
typdoc
Conference papers
DOI
DOI : 10.1071/RDv25n1Ab51
audience
Not specified
Accès au texte intégral et bibtex
https://hal.science/hal-01004742/file/2013_Kiefer_Reproduction%20Fertility%20and%20Development_1.pdf BibTex

Habilitation à diriger des recherches

titre
Approches statistiques pour l'analyse de données génomiques
auteur
Marie-Laure Martin-Magniette
article
Life Sciences [q-bio]. Université d'Évry-Val-d'Essonne, 2013
identifiant
tel-02806029
typdoc
Habilitation à diriger des recherches
Accès au texte intégral et bibtex
https://hal.inrae.fr/tel-02806029/file/2013_Martin-Magniette_HDR_1.pdf BibTex

Preprints, Working Papers, ...

titre
Comparing Model Selection and Regularization Approaches to Variable Selection in Model-Based Clustering
auteur
Gilles Celeux, Marie-Laure Martin-Magniette, Cathy Maugis-Rabusseau, Adrian E. Raftery
article
2013
identifiant
hal-00849439
Resume_court
We compare two major approaches to variable selection in clustering: model selection and regularizat .....
typdoc
Preprints, Working Papers, ...
audience
Not specified
Accès au bibtex
https://arxiv.org/pdf/1307.7860 BibTex

2012

Journal articles

titre
SelvarClustMV: Variable selection approach in model-based clustering allowing for missing values
auteur
Cathy Maugis-Rabusseau, Martin-Magniette Marie-Laure, Pelletier Sandra
article
Journal de la Société Française de Statistique, 2012, 15 (2), pp.21-36
identifiant
hal-00972003
Resume_court
Overabundance of clustering methods exists but none was devised with a variable selection procedure .....
typdoc
Journal articles
audience
National
Accès au bibtex
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titre
A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments
auteur
David Rengel, Sandrine Arribat, Pierre Maury, Marie-Laure Martin-Magniette, Thibault Hourlier, Marion Laporte, Didier Vares, Sebastien Carrere, Philippe Grieu, Sandrine Balzergue, Jerome Gouzy, Patrick P. Vincourt, Nicolas Langlade
article
PLoS ONE, 2012, 7 (10), pp.e45249. ⟨10.1371/journal.pone.0045249⟩
identifiant
hal-02644423
Resume_court
Identifying the connections between molecular and physiological processes underlying the diversity o .....
typdoc
Journal articles
DOI
DOI : 10.1371/journal.pone.0045249
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02644423/file/2012_Rengel_PlosOne_1.pdf BibTex
titre
Variational Bayes approach for model aggregation in unsupervised classification with Markovian dependency
auteur
Stevenn Volant, Marie-Laure Magniette Martin-Magniette, Stephane S. Robin
article
Computational Statistics and Data Analysis, 2012, 56 (8), pp.2375-2387. ⟨10.1016/j.csda.2012.01.027⟩
identifiant
hal-01000046
Resume_court
A binary unsupervised classification problem where each observation is associated with an unobserved .....
typdoc
Journal articles
DOI
DOI : 10.1016/j.csda.2012.01.027
audience
Not specified
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https://hal.science/hal-01000046/file/VMR12-CSDA_1.pdf BibTex

Poster communications

titre
BAC libraries for structural genomic development in oak
auteur
Patricia P. Faivre-Rampant, Isabelle Lesur Kupin Lesur, Isabelle I. Le Clainche, Aurelie A. Canaguier, Clément Boussardon, Marie-Laure Martin-Magniette, Catherine Bodenes-Brezard Bodénès, Franck F. Salin, Grégoire G. Le Provost, Helene H. Berges, Antoine Kremer, Christophe Plomion
article
IUFRO working group “Genetics of Quercus and Nothofagus”, Oct 2012, Bordeaux, France. 1 p., 2012
identifiant
hal-02808373
typdoc
Poster communications
audience
National
Accès au bibtex
BibTex

2011

Journal articles

titre
Genomic approach to study floral development genes in Rosa sp.
auteur
Annick Dubois, Arnaud A. Remay, Olivier Raymond, Sandrine Balzergue, Aurélie Chauvet, Marion Maene, Yann Pécrix, Shu-Hua Yang, Julien Jeauffre, Tatiana Thouroude, Véronique Boltz, Marie-Laure Martin-Magniette, Stéphane Janczarski, Fabrice Legeai, Jean-Pierre Renou, Philippe Vergne, Manuel Le Bris, Fabrice Foucher, Mohammed Bendahmane
article
PLoS ONE, 2011, 6 (12), ⟨10.1371/journal.pone.0028455⟩
identifiant
hal-00753396
Resume_court
Cultivated for centuries, the varieties of rose have been selected based on a number of flower trait .....
typdoc
Journal articles
DOI
DOI : 10.1371/journal.pone.0028455
pubmedId
Pubmed icone : 22194838
audience
International
Accès au texte intégral et bibtex
https://inria.hal.science/hal-00753396/file/journal.pone.0028455.PDF BibTex
titre
Variable selection in model-based discriminant analysis
auteur
Cathy Maugis, Gilles Celeux, Marie-Laure Martin-Magniette
article
Journal of Multivariate Analysis, 2011, 102 (10), pp.1374-1387. ⟨10.1016/j.jmva.2011.05.004⟩
identifiant
hal-00666826
Resume_court
A general methodology for selecting predictors for Gaussian generative classification models is pres .....
typdoc
Journal articles
DOI
DOI : 10.1016/j.jmva.2011.05.004
audience
International
Accès au bibtex
BibTex
titre
Letter to the Editor
auteur
Gilles Celeux, Marie-Laure Martin-Magniette, Cathy Maugis, Raftery Adrian
article
Journal of the American Statistical Association, 2011, 106, pp.383-383
identifiant
hal-00944081
Resume_court
no abstract
typdoc
Journal articles
audience
International
Accès au bibtex
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titre
Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
auteur
Patricia P. Faivre-Rampant, Isabelle Lesur, Clément Boussardon, Frederique Bitton, Marie-Laure Martin-Magniette, Catherine Bodenes-Brezard, Grégoire G. Le Provost, Helene H. Berges, Sylvia Fluch, Antoine Kremer, Christophe Plomion
article
BMC Genomics, 2011, 12, 13 p. ⟨10.1186/1471-2164-12-292⟩
identifiant
hal-02646702
Resume_court
Background : One of the key goals of oak genomics research is to identify genes of adaptive signific .....
typdoc
Journal articles
DOI
DOI : 10.1186/1471-2164-12-292
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02646702/file/2011_Faivre-Rampant_BMC-Genomics_1 BibTex
titre
Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids
auteur
Ali M. Banaei Moghaddam, François Roudier, Michael Seifert, Caroline Bérard, Marie-Laure Martin-Magniette, Raheleh Karimi Ashtiyani, Andreas Houben, Vincent Colot
article
Plant Journal, 2011, 67 (4), pp.691-700. ⟨10.1111/j.1365-313X.2011.04628.x⟩
identifiant
hal-02645621
Resume_court
Plant genomes are earmarked with defined patterns of chromatin marks. Little is known about the stab .....
typdoc
Journal articles
DOI
DOI : 10.1111/j.1365-313X.2011.04628.x
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02645621/file/2011MagniettePlant_1.pdf BibTex
titre
Letter to the editor: ''{A} framework for feature selection in clustering
auteur
Gilles Celeux, Marie-Laure Martin-Magniette, Cathy Maugis, Adrian E. Raftery
article
Journal of the American Statistical Association, 2011, 106 (493), pp.383. ⟨10.1198/jasa.2011.tm10681⟩
identifiant
hal-00666845
typdoc
Journal articles
DOI
DOI : 10.1198/jasa.2011.tm10681
audience
International
Accès au bibtex
BibTex

Reports

titre
Clustering high-throughput sequencing data with Poisson mixture models
auteur
Andrea Rau, Gilles Celeux, Marie-Laure Martin-Magniette, Cathy Maugis-Rabusseau
article
[Research Report] RR-7786, INRIA. 2011, pp.36
identifiant
hal-01193758
Resume_court
In recent years gene expression studies have increasingly made use of next generation sequencing tec .....
typdoc
Reports
audience
Not specified
Accès au texte intégral et bibtex
https://inria.hal.science/hal-01193758/file/RR-7786.pdf BibTex

2010

Journal articles

titre
Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes.
auteur
David Cohen, Marie-Béatrice Bogeat-Triboulot, Emilie Tisserant, Sandrine Balzergue, Marie-Laure Martin-Magniette, Gaëlle Lelandais, Nathalie Ningre, Jean-Pierre Renou, Jean-Philippe Tamby, Didier Le Thiec, Irène Hummel
article
BMC Genomics, 2010, 11 (1), pp.630. ⟨10.1186/1471-2164-11-630⟩
identifiant
inserm-00663875
Resume_court
BACKGROUND: Comparative genomics has emerged as a promising means of unravelling the molecular netwo .....
typdoc
Journal articles
DOI
DOI : 10.1186/1471-2164-11-630
pubmedId
Pubmed icone : 21073700
audience
International
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-00663875/file/1471-2164-11-630.pdf BibTex
titre
Transcriptomic Analysis Highlights Time-specific Embryonic Adaptation of Mice to the Lack of PrP
auteur
Manal Khalife, Rachel Young, Sead Chadi, Sandrine Le Guillou, Lucas Lefevre, Gaëlle Tilly, Frédérique Bitton, Marie-Laure Martin-Magniette, Ludivine Soubigou-Taconnat, Sandrine Balzergue, Marthe Vilotte, Bruno Passet, Vincent Béringue, Jean-Pierre Renou, Fabienne Le Provost, Hubert Laude, Jean-Luc Vilotte
article
Prion, 2010, 4 (3), Non spécifié. ⟨10.4161/pri.12773⟩
identifiant
hal-03339362
Resume_court

The physiological function of the PrP remains largely elusive. Its invalidation does not affect m .....

typdoc
Journal articles
DOI
DOI : 10.4161/pri.12773
audience
International
Accès au bibtex
BibTex

Conference papers

titre
Statistical methodology for the analysis of multi-sample ChIP-chip experiments
auteur
Tristan Mary-Huard, Marie-Laure Martin-Magniette, Caroline Berard, Stephane Robin
article
25. International Biometric Conference, Dec 2010, Florianopolis, Brazil. 1 p
identifiant
hal-01197553
Resume_court
absent
typdoc
Conference papers
audience
Not specified
Accès au bibtex
BibTex
titre
Transcriptomic approach to study oocyte competence in the hen
auteur
Sébastien Elis, Elisabeth Blesbois, Joëlle Dupont, Philippe Monget, Isabelle Couty, Sandrine Balzergue, Marie-Laure Martin-Magniette, Florence Batellier, Marina Govoroun
article
13. European Poultry Conference (EPC 2010), Aug 2010, Tours, France
identifiant
hal-02757331
typdoc
Conference papers
audience
National
Accès au bibtex
BibTex
titre
POPSEC : molecular bases of acclimation to water deficit in poplar
auteur
Marie-Béatrice Bogeat-Triboulot, David Cohen, Didier Le Thiec, Sandrine Balzergue, Marie-Laure Martin-Magniette, Jean-Pierre Renou, Philippe Label, Marie-Claude Lesage-Descauses, Françoise F. Laurans, Isabelle Bourgait, Annabelle Dejardin, Jean-Charles Leplé, Domenico D. Morabito, Ludovic Bonhomme, Franck F. Brignolas, Delphine D. Vincent, Christophe Plomion, Irène Hummel
article
Séminaire Génoplante, Mar 2010, Mallemort-en-Provence, France. 22 p
identifiant
hal-02823287
typdoc
Conference papers
audience
National
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02823287/file/40769_20110405014201697_1.pdf BibTex
titre
Approche bayésienne variationnelle pour l'agrégation de modèles en classification.
auteur
Stevenn Volant, Marie-Laure Martin-Magniette, Stéphane Robin
article
42èmes Journées de Statistique, 2010, Marseille, France, France
identifiant
inria-00494832
Resume_court
Nous nous intéressons au cas d'un mélange entre deux populations dont l'une est connue et facileme .....
typdoc
Conference papers
audience
International
Accès au texte intégral et bibtex
https://inria.hal.science/inria-00494832/file/p197.pdf BibTex

Reports

titre
Variable selection in model-based discriminant analysis
auteur
Cathy Maugis, Gilles Celeux, Marie-Laure Martin-Magniette
article
[Research Report] RR-7290, INRIA. 2010
identifiant
inria-00483229
Resume_court
A general methodology for selecting predictors for Gaussian generative classification models is pres .....
typdoc
Reports
audience
Not specified
Accès au texte intégral et bibtex
https://inria.hal.science/inria-00483229/file/RR-7290.pdf BibTex

2009

Journal articles

titre
Estimation of the hazard function in a semiparametric model with covariate measurement error
auteur
Marie-Laure Martin-Magniette, Marie-Luce Taupin
article
ESAIM: Probability and Statistics, 2009, 13, pp.87-114. ⟨10.1051/ps:2008004⟩
identifiant
hal-00480192
Resume_court
We consider a failure hazard function, conditional on a time-independent covariate , given by . The .....
typdoc
Journal articles
DOI
DOI : 10.1051/ps:2008004
audience
International
Accès au texte intégral et bibtex
https://hal.science/hal-00480192/file/PEER_stage2_10.1051%252Fps%253A2008004.pdf BibTex
titre
Mélanges gaussiens bidimensionnels pour la comparaison de deux échantillons de chromatine immunoprécipitée
auteur
Caroline Berard, Marie-Laure Martin-Magniette, Alexandra To, François Roudier, Vincent Colot, Stephane Robin
article
La revue MODULAD, 2009, 40, pp.53-68
identifiant
hal-01197565
Resume_court
L’immunoprécipitation de la chromatine (ChIP) permet d’étudier les interactions entre les prot .....
typdoc
Journal articles
audience
Not specified
Accès au texte intégral et bibtex
https://hal.science/hal-01197565/file/51211_20120308084920041_1.pdf BibTex
titre
Identification of germinal disk region derived genes potentially involved in hen fertility
auteur
Sébastien Elis, Elisabeth Blesbois, Isabelle Couty, Sandrine Balzergue, Marie-Laure Martin-Magniette, Florence Batellier, Marina Govoroun
article
Molecular Reproduction and Development, 2009, 76 (11), pp.1043-1055. ⟨10.1002/mrd.21062⟩
identifiant
hal-02666532
Resume_court
Despite the regular decrease in fertility observed in hens, especially in "meat" lines, little is kn .....
typdoc
Journal articles
DOI
DOI : 10.1002/mrd.21062
audience
International
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titre
Sélection de variables pour la classification par mélanges gaussiens pour prédire la fonction des gènes orphelins
auteur
Cathy Maugis, Marie-Laure Martin-Magniette, Jean-Philippe Tamby, Jean-Pierre Renou, Alain Lecharny, Sebastien Aubourg, Gilles Celeux
article
La revue MODULAD, 2009, 40, pp.69-80
identifiant
hal-01197529
Resume_court
Les biologistes s’attachent actuellement à prédire la fonction des gènes d’organismes de gén .....
typdoc
Journal articles
audience
Not specified
Accès au texte intégral et bibtex
https://hal.science/hal-01197529/file/48871_20120307042945568_1.pdf BibTex

Conference papers

titre
POPSEC : molecular bases of acclimation to water deficit in poplar
auteur
Marie-Béatrice Bogeat-Triboulot, David Cohen, Didier Le Thiec, Sandrine Balzergue, Marie-Laure Martin-Magniette, Jean-Pierre Renou, Philippe Label, Marie-Claude Lesage-Descauses, Françoise F. Laurans, Isabelle Bourgait, Annabelle Dejardin, Jean-Charles Leplé, Domenico D. Morabito, Ludovic Bonhomme, Franck F. Brignolas, Delphine D. Vincent, Christophe Plomion, Irène Hummel
article
3. symposium franco-suédois UPRA, Nov 2009, Champenoux, France. 26 p
identifiant
hal-02817980
typdoc
Conference papers
audience
National
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02817980/file/43713_20110405113347958_1.pdf BibTex
titre
Sélection de variables pour la classification non supervisée par mélanges gaussiens et pour l'analyse discriminante gaussienne
auteur
Cathy Maugis, Gilles Celeux, Marie-Laure Martin-Magniette
article
41èmes Journées de Statistique, SFdS, Bordeaux, 2009, Bordeaux, France, France
identifiant
inria-00386582
Resume_court
Les procédures actuelles de sélection de variables dans le cadre de la classification non supervis .....
typdoc
Conference papers
audience
International
Accès au bibtex
BibTex
titre
Mélange de gaussiennes bidimensionnelles pour l'analyse de données de ChIP-chip IP/IP
auteur
Caroline Bérard, Marie-Laure Martin-Magniette, François Roudier, Stéphane Robin
article
41èmes Journées de Statistique, SFdS, Bordeaux, 2009, Bordeaux, France, France
identifiant
inria-00386657
Resume_court
Le ChIP-chip (immunoprécipitation de la chromatine sur puce) est une technique utilisée pour étud .....
typdoc
Conference papers
audience
International
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https://inria.hal.science/inria-00386657/file/p98.pdf BibTex

Poster communications

titre
Molecular bases of acclimation to water deficit in poplar mature leaves
auteur
David Cohen, Irène Hummel, Sandrine Balzergue, Marie-Laure Martin-Magniette, Emilie Tisserant, Didier Le Thiec, Erwin Dreyer, Jean-Pierre Renou, Marie-Béatrice Bogeat-Triboulot
article
Plant Abiotic Stress Tolerance. International conference, Feb 2009, Vienne, Austria. 1 p., 2009
identifiant
hal-02817713
Resume_court
In temperate zones the global change will include a decrease of summer precipitations inducing longe .....
typdoc
Poster communications
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02817713/file/32567_20090910105852221_1.pdf BibTex

2008

Journal articles

titre
Transcriptional and Metabolic Adjustments in ADP-Glucose pyrophosphorylase -deficient bt2 Maize kernels
auteur
Magalie Cossegal, Pierre Chambrier, Sylvie Mbelo, S. Balzergue, Marie-Laure Martin-Magniette, Annick Moing, Catherine Deborde, V. Guyon, Patrick Pérez, Peter Rogowsky
article
Plant Physiology, 2008, 146 (4), pp.1553-1570. ⟨10.1104/pp.107.112698⟩
identifiant
hal-00412597
Resume_court
During the cloning of monogenic recessive mutations responsible for a defective kernel phenotype in .....
typdoc
Journal articles
DOI
DOI : 10.1104/pp.107.112698
audience
International
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titre
Systemic Signaling of the Plant Nitrogen Status Triggers Specific Transcriptome Responses Depending on the Nitrogen Source in Medicago truncatula.
auteur
Sandrine Ruffel, Sandra Freixes, Sandrine Balzergue, Pascal Tillard, Christian Jeudy, Marie Laure Martin-Magniette, Margaretha J van Der Merwe, Klementina Kakar, Jerome Gouzy, Alisdair R Fernie, Michael K. Udvardi, Christophe Salon, Alain Gojon, Marc Lepetit
article
Plant Physiology, 2008, 146 (4), pp.2020-2035. ⟨10.1104/pp.107.115667⟩
identifiant
hal-00275798
Resume_court
Legumes can acquire nitrogen (N) from NO(3)(-), NH(4)(+), and N(2) (through symbiosis with Rhizobium .....
typdoc
Journal articles
DOI
DOI : 10.1104/pp.107.115667
pubmedId
Pubmed icone : 18287487
audience
Not specified
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titre
Differential gene expression of the honey bee Apis mellifera associated with Varroa destructor infection
auteur
Maria Navajas, Alain Migeon, C. Alaux, Marie-Laure Martin-Magniette, G.E. Robinson, J.D. Evans, Sandrine Cros-Arteil, Didier Crauser, Yves Le Conte
article
BMC Genomics, 2008, 9, pp.301. ⟨10.1186/1471-2164-9-301⟩
identifiant
hal-02659274
Resume_court
Background: The parasitic mite, Varroa destructor, is the most serious pest of the western honey bee .....
typdoc
Journal articles
DOI
DOI : 10.1186/1471-2164-9-301
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02659274/file/28270_20090302085600780_1.pdf BibTex
titre
Search for the genes involved in oocyte maturation and early embryo development in the hen
auteur
Sébastien Elis, Florence Batellier, Isabelle Couty, Sandrine Balzergue, Marie-Laure Martin-Magniette, Philippe Monget, Elisabeth Blesbois, Marina Govoroun
article
BMC Genomics, 2008, 9, pp.1-20. ⟨10.1186/1471-2164-9-110⟩
identifiant
hal-02666483
Resume_court
Background: The initial stages of development depend on mRNA and proteins accumulated in the oocyte, .....
typdoc
Journal articles
DOI
DOI : 10.1186/1471-2164-9-110
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02666483/file/23497_20080423082848595_1.pdf BibTex
titre
Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5
auteur
Moussa Benhamed, Marie-Laure Martin-Magniette, Ludivine Taconnat, Frederique Bitton, Caroline Servet, Rebecca de Clercq, Bjorn de Meyer, Caroline Buysschaert, Stephane Rombauts, Raimundo Villarroel, Sebastien S. Aubourg, Jim Beynon, Rishikesh P. Bhalerao, George Coupland, Wilhelm Gruissem, Frank L.H. Menke, Bernd Weisshaar, Jean-Pierre Renou, Dao-Xiu Zhou, Pierre Hilson
article
Plant Journal, 2008, 56 (3), pp.493-504. ⟨10.1111/j.1365-313X.2008.03606.x⟩
identifiant
hal-02659090
Resume_court
We have assembled approximately 20 000 Arabidopsis thaliana promoter regions, compatible with functi .....
typdoc
Journal articles
DOI
DOI : 10.1111/j.1365-313X.2008.03606.x
pubmedId
Pubmed icone : 18644002
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02659090/file/50215_20120530112801283_1.pdf BibTex

Conference papers

titre
Arabidopsis transcriptomics reveals conserved and divergent gene expression profiles between Arabidopsis thaliana accessions challenged with three different potyviruses
auteur
Valerie Schurdi-Levraud, Xaoyan Feng, Frederique Bitton, Marie-Laure Martin-Magniette, Ludivine Taconnat, Jean-Pierre J.-P. Renou, Thierry T. Candresse, Frederic Revers
article
International conference, Nov 2008, Cadiz - El Puerto de Santa Maria, Spain
identifiant
hal-02757777
typdoc
Conference papers
audience
International
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BibTex
titre
ChIPmix: Mixture model of regressions for two-color ChIP-chip analysis
auteur
Tristan Mary-Huard, Marie-Laure Martin-Magniette, Caroline Berard, Stephane Robin
article
ECCB'08: 7. European Conference on Computational Biology, Sep 2008, Calgari, Italy. 19 p
identifiant
hal-01197548
Resume_court
Chromatin immunoprecipitation (ChIP) combined with DNA microarray is a high-throughput technology to .....
typdoc
Conference papers
audience
Not specified
Accès au texte intégral et bibtex
https://hal.science/hal-01197548/file/50091_20120315104314165_1.pdf BibTex
titre
Lowess extension to normalize three dyes cDNA microarray experiments
auteur
Julie Aubert, Marie-Laure Martin-Magniette, Samira Elftieh, Avner Bar-Hen, Jean-Pierre Renou, Jean-Jacques Daudin
article
Journées Ouvertes Biologie Informatique Mathématiques, Jun 2008, Lille, France
identifiant
hal-01197563
Resume_court
Most microarray studies are made using labelling with one or two dyes which allows the hybridization .....
typdoc
Conference papers
audience
Not specified
Accès au texte intégral et bibtex
https://hal.science/hal-01197563/file/51062_20120312110725937_1.pdf BibTex

Preprints, Working Papers, ...

titre
Variable Selection in Model-based Clustering: A General Variable Role Modeling
auteur
Cathy Maugis, Gilles Celeux, Marie-Laure Martin-Magniette
article
2008
identifiant
inria-00342108
Resume_court
The currently available variable selection procedures in model-based clustering assume that the irre .....
typdoc
Preprints, Working Papers, ...
audience
Not specified
Accès au texte intégral et bibtex
https://inria.hal.science/inria-00342108/file/RR-6744.pdf BibTex

2007

Journal articles

titre
Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance.
auteur
Fanny Ramel, Cécile Sulmon, Francisco Cabello-Hurtado, Ludivine Taconnat, Marie-Laure Martin-Magniette, Jean-Pierre Renou, Abdelhak El Amrani, Ivan Couée, Gwenola Gouesbet
article
BMC Genomics, 2007, 8, pp.450. ⟨10.1186/1471-2164-8-450⟩
identifiant
hal-00264268
Resume_court
Background: Soluble sugars, which play a central role in plant structure and metabolism, are also in .....
typdoc
Journal articles
DOI
DOI : 10.1186/1471-2164-8-450
audience
International
Accès au texte intégral et bibtex
https://hal.science/hal-00264268/file/Ramel_al2007BMC-Genomics.pdf BibTex
titre
Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27
auteur
Franziska Turck, François Roudier, Sara Farrona, Marie-Laure Martin-Magniette, Elodie Guillaume, Nicolas Buisine, Séverine Gagnot, Robert A. Martienssen, George Coupland, Vincent Colot
article
PLoS Genetics, 2007, 3 (6), pp.855-866. ⟨10.1371/journal.pgen.0030086⟩
identifiant
hal-02663914
Resume_court
TERMINAL FLOWER 2/LIKE HETEROCHROMATIN PROTEIN 1 (TFL2/LHP1) is the only Arabidopsis protein with ov .....
typdoc
Journal articles
DOI
DOI : 10.1371/journal.pgen.0030086
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02663914/file/51703_20120510022710389_1.pdf BibTex
titre
Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome
auteur
Sebastien S. Aubourg, Marie-Laure Martin-Magniette, Veronique V. Brunaud, Ludivine Taconnat, Frederique Bitton, Sandrine Balzergue, Pauline E. Jullien, Mathieu Ingouff, Vincent Thareau, Thomas Schiex, Alain Lecharny, Jean-Pierre J.-P. Renou
article
BMC Genomics, 2007, 8 (401), pp.1-9. ⟨10.1186/1471-2164-8-401⟩
identifiant
hal-02668276
Resume_court
Background: Since the finishing of the sequencing of the Arabidopsis thaliana genome, the Arabidopsi .....
typdoc
Journal articles
DOI
DOI : 10.1186/1471-2164-8-401
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02668276/file/42814_20110307121241666_1.pdf BibTex

Conference papers

titre
Différenciation fonctionnelle de l'épithélium sécrétoire mammaire caprin
auteur
Felicie Faucon, Emmanuelle Rebours, Jean-Christophe Helbling, Claudia Bevilacqua, Marie-Laure Magniette, Stephane Robin, Patrice Martin
article
14. Rencontres Recherches Ruminants, Dec 2007, Paris, France
identifiant
hal-01197492
Resume_court
absent
typdoc
Conference papers
audience
Not specified
Accès au texte intégral et bibtex
https://hal.science/hal-01197492/file/2007_Faucon_3R_1.pdf BibTex
titre
Kinetic assessment of global gene expression changes during tension wood formation in poplar
auteur
Jean-Charles Leplé, Marie-Claude Lesage Descauses, Françoise F. Laurans, Moreau Alain, Annabelle Dejardin, Marie-Laure Martin-Magniette, Gilles G. Pilate
article
IUFRO - Tree Biotechnology 2007, Jun 2007, Ponta Delgada, Azores, Portugal
identifiant
hal-02751019
typdoc
Conference papers
audience
International
Accès au bibtex
BibTex

Reports

titre
Variable Selection for Clustering with Gaussian Mixture Models
auteur
Cathy Maugis, Gilles Celeux, Marie-Laure Martin-Magniette
article
[Research Report] RR-6211, INRIA. 2007, pp.35
identifiant
inria-00153057
Resume_court
This article is concerned with variable selection for cluster analysis. The problem is regarded as a .....
typdoc
Reports
audience
Not specified
Accès au texte intégral et bibtex
https://inria.hal.science/inria-00153057/file/RR-6211.pdf BibTex

2006

Preprints, Working Papers, ...

titre
Semi-parametric estimation of the hazard function in a model with covariate measurement error
auteur
Marie-Laure Martin-Magniette, Marie-Luce Taupin
article
2006
identifiant
hal-00079007
Resume_court
We consider a model where the failure hazard function, conditional on a covariate $Z$ is given by $R .....
typdoc
Preprints, Working Papers, ...
audience
Not specified
Accès au texte intégral et bibtex
https://hal.science/hal-00079007/file/prepub.pdf BibTex

2005

Journal articles

titre
Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis
auteur
Fabien Jammes, Philippe Lecomte, Janice de Almeida Engler, Frederique Bitton, Marie-Laure Martin-Magniette, Jean-Pierre J.-P. Renou, Pierre Abad, Bruno Favery
article
Plant Journal, 2005, 44 (3), pp.447-458. ⟨10.1111/j.1365-313X.2005.02532.x⟩
identifiant
hal-02682347
typdoc
Journal articles
DOI
DOI : 10.1111/j.1365-313X.2005.02532.x
audience
International
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BibTex

2004

Journal articles

titre
Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
auteur
Claire Lurin, Charles Andres, Sebastien Aubourg, M. Bellaoui, Frédérique Bitton, Clémence Bruyère, Michel M. Caboche, C. Debast, José Gualberto, B. Hoffmann, A. Lecharny, M. Le Ret, Marie-Laure Martin-Magniette, Hakim Mireau, Nemo Peeters, J.P. Renou, B. Szurek, Ludivine Taconnat, Ian Small
article
The Plant cell, 2004, 16 (7), pp.1-15
identifiant
hal-02679636
Resume_court
The complete sequence of the Arabidopsis thaliana genome revealed thousands of previously unsuspecte .....
typdoc
Journal articles
pubmedId
Pubmed icone : 15269332
audience
International
Accès au texte intégral et bibtex
https://hal.inrae.fr/hal-02679636/file/THE%20PLANT%20CELL%20ONLINE%202004%20Lurin.pdf BibTex

Book sections

titre
Techniques statistique pour l’analyse du transcriptome
auteur
Stephane Robin, Marie-Laure Magniette
article
Informatique pour l’analyse du transcriptome, Editions Lavoisier, 320 p., 2004
identifiant
hal-01222881
Resume_court
absent
typdoc
Book sections
audience
Not specified
Accès au bibtex
BibTex

2001

Theses

titre
Survival data: 1) taking into account the measurement error of the covariate 2) non-parametric estimation of the hazard function by model slection. Application to the Hiroshima data
auteur
Marie-Laure Martin
article
Life Sciences [q-bio]. 2001. English. ⟨NNT : ⟩
identifiant
tel-02832527
Resume_court
We consider two statistical problems arising during the estimation of the hazard function of cancer .....
typdoc
Theses
Accès au bibtex
BibTex