Journal articles

titre

Reconstruction of ancestral plant genomes for inter-crop translational research

auteur

Cléa Siguret, Margaux Olivier, Cécile Huneau, Mamadou Dia Sow, Pierre-Louis Stenger, Christophe Klopp, Marie-Laure Martin, Jean-Philippe Tamby, Sergueï Gorbounov, Raphaël Flores, Fabrice Legeai, Matéo Boudet, Raffaella Battaglia, Davide Guerra, Peter Civan, Caroline Pont, Anne-Françoise Adam-Blondon, Luigi Cattivelli, Olivier Mathieu, Jérôme Salse

article

Molecular Plant, 2026, 19 (9), pp.1854-1872. ⟨10.1016/j.molp.2026.06.012⟩

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hal-05682039

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We present an initial exploratory framework, Ancestral Genome Reconstruction (AGR), to automatically .....

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Journal articles

DOI

DOI : 10.1016/j.molp.2026.06.012

pubmedId

: 42387861

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Environmental context reveals distinct regulatory patterns in field-grown versus in vitro symbiotic protocorms of Dactylorhiza majalis (Orchidaceae)

auteur

Julita Minasiewicz, Marcin Jąkalski, Marie-Laure Martin, Alexandra Launay-Avon, Tomáš Figura, Piotr Mleczko, Monika Lipińska, Konrad Ślusarz, Marc-André Selosse, Etienne Delannoy

article

BMC Plant Biology, 2026, ⟨10.1186/s12870-026-09554-y⟩

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hal-05703790

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Abstract Background Understanding orchid mycorrhizas and symbiotic germination has long depended on .....

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Journal articles

DOI

DOI : 10.1186/s12870-026-09554-y

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Molecular and physiological characterization of two sunflower near-isogenic lines with contrasting haplotypes for leaf senescence

auteur

Marco Moroldo, Nicolas Blanchet, Nicolas Pouilly, Stéphanie Pateyron, Marie-Laure Martin, Etienne Delannoy, Cédric Cassan, Yves Gibon, Sébastien Carrère, Guillaume Marti, Nicolas Bernard Langlade

article

BMC Plant Biology, 2026, 26 (1), pp.1683. ⟨10.1186/s12870-026-09110-8⟩

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hal-05655187

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Background Leaf senescence is regulated by several genetic mechanisms and environmental factors. Dur .....

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Journal articles

DOI

DOI : 10.1186/s12870-026-09110-8

pubmedId

: 42249280

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On the importance of being powerful to detecting specific regulations in omics studies

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Jeremy Ferraro, Virginie Noël, Axel de Zelicourt, Michael Hodges, Elodie Gilbault, Olivier Loudet, José Caïus, Alexandra Launay-Avon, Stéphanie Pateyron, Christine Paysant Le Roux, Marlène Davanture, Marie-Laure Martin, Benoît Castandet, Etienne Delannoy, Guillem Rigaill

article

Nature Plants, 2026, 123 (5), ⟨10.1038/s41477-026-02303-x⟩

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hal-05614052

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Journal articles

DOI

DOI : 10.1038/s41477-026-02303-x

pubmedId

: 42082758

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International

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titre

How to be dispensable: genomic and transcriptomic determinants in maize genes

auteur

Johann Joets, Maëva Mollion, Kevin Baudry, Maud Fagny, Olivier Turc, Llorenç Cabrera-Bosquet, Sylvie Coursol, Claude Welcker, Peter Rogowsky, Harry Belcram, Agnès Rousselet, Anthony Venon, Sandrine Chaignon, Stéphanie Pateyron, Jérôme Laplaige, Christine Paysant Le Roux, Véronique Brunaud, Marie-Laure Martin, Carine Palaffre, William Marande, Maud Tenaillon, Clémentine Vitte

article

Communications Biology, 2026, 8 (1), pp.1530. ⟨10.64898/2026.04.25.720561⟩

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hal-05684178

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Abstract Background Plant genomes harbour a substantial proportion of dispensable genes – present .....

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Journal articles

DOI

DOI : 10.64898/2026.04.25.720561

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Journal articles

titre

MCQR : Enhancing the Processing and Analysis of Quantitative Proteomics Data by Incorporating Chromatography and Mass Spectrometry Information

auteur

Thierry Balliau, Anne Frambourg, Olivier Langella, Marie-Laure Martin, Michel Zivy, Mélisande Blein-Nicolas

article

Journal of Proteome Research, 2025, ⟨10.1021/acs.jproteome.4c01119⟩

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hal-05087344

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In the field of proteomics, generating biologically relevant results from mass spectrometry (MS) sig .....

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Journal articles

DOI

DOI : 10.1021/acs.jproteome.4c01119

pubmedId

: 40391828

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Modeling plant phenotypic plasticity and its underlying genetic architecture: a comparative study

auteur

Sebastian Arenas, Yacine Djabali, Renaud Rincent, Philippe Cubry, Marie-Laure Martin, Mélisande Blein-Nicolas, Laurent Laplaze, Hannah Schneider, Alexandre Grondin

article

Journal of Experimental Botany, 2025, 76 (8), pp.2239-2251. ⟨10.1093/jxb/eraf013⟩

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hal-05087340

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Phenotypic plasticity can contribute to crop adaptation to challenging environments. Plasticity indi .....

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Journal articles

DOI

DOI : 10.1093/jxb/eraf013

pubmedId

: 39812577

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International

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High host density promotes ash dieback

auteur

Marie-Laure Martin, François Ningre, Arnaud Dowkiw, Noël Le Goff, Benoit Marçais

article

Plant Pathology, 2025, 74 (5), pp.1366-1375. ⟨10.1111/ppa.14099⟩

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hal-05012488

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Ash dieback, induced by Hymenoscyphus fraxineus, a pathogenic ascomycete native to East Asia .....

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Journal articles

DOI

DOI : 10.1111/ppa.14099

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Journal articles

titre

Integrative systems biology of wheat susceptibility to Fusarium graminearum uncovers a conserved gene regulatory network and identifies master regulators targeted by fungal core effectors

auteur

Florian Rocher, Samir Dou, Géraldine Philippe, Marie-Laure Martin, Philippe Label, Thierry Langin, Ludovic Bonhomme

article

BMC Biology, 2024, 22 (1), ⟨10.1186/s12915-024-01852-x⟩

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hal-04501202

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Background Plant diseases are driven by an intricate set of defense mechanisms counterbalanced by th .....

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Journal articles

DOI

DOI : 10.1186/s12915-024-01852-x

pubmedId

: 38443953

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International

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Trade-off between predictive performance and FDR control for high-dimensional Gaussian model selection

auteur

Perrine Lacroix, Marie-Laure Martin

article

Electronic Journal of Statistics , 2024, 18 (2), pp.2886-2930. ⟨10.1214/24-EJS2260⟩

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hal-03978309

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In the context of the high-dimensional Gaussian linear regression for ordered variables, we study th .....

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Journal articles

DOI

DOI : 10.1214/24-EJS2260

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Journal articles

titre

Plasticity QTLs specifically contribute to the genotype × water availability interaction in maize

auteur

Yacine Djabali, Renaud Rincent, Marie-Laure Martin, Mélisande Blein-Nicolas

article

TAG Theoretical and Applied Genetics, 2023, 136 (11), pp.228. ⟨10.1007/s00122-023-04458-z⟩

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hal-04002996

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Concerns regarding high maize yield losses due to increasing occurrences of drought events are growi .....

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Journal articles

DOI

DOI : 10.1007/s00122-023-04458-z

pubmedId

: 37855950

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titre

Expression of cell-wall related genes is highly variable and correlates with sepal morphology

auteur

Diego A Hartasánchez, Annamaria Kiss, Virginie Battu, Charline Soraru, Abigail Delgado-Vaquera, Florian Massinon, Marina Brasó-Vives, Corentin Mollier, Marie-Laure Martin-Magniette, Arezki Boudaoud, Françoise Monéger

article

Peer Community Journal, 2023, 3 (93), ⟨10.24072/pcjournal.327⟩

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hal-04248384

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Control of organ morphology is a fundamental feature of living organisms. There is, however, observa .....

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Journal articles

DOI

DOI : 10.24072/pcjournal.327

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titre

A localized osmotic stress activates systemic responses to N-limitation in Medicago truncatula-Sinorhizobium symbiotic plants

auteur

Marie-Laure Martin, Marjorie Pervent, Ilana Lambert, Stefano Colella, Mathilde Tancelin, Dany Severac, Gilles Clément, Pascal Tillard, Florian Frugier, Marc Lepetit

article

Frontiers in Plant Science, 2023, 14, pp.1288070. ⟨10.3389/fpls.2023.1288070⟩

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hal-04276739

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The topic of this paper is the physiological adaptation of legume-rhizobium symbiotic plants to fluc .....

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Journal articles

DOI

DOI : 10.3389/fpls.2023.1288070

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Journal articles

titre

Analyzing Multifactorial RNA-Seq Experiments with DiCoExpress

auteur

Kevin Baudry, Christine Paysant-Le Roux, Stefano Colella, Benoît Castandet, Marie-Laure Martin-Magniette

article

Journal of visualized experiments : JoVE, 2022, 185, pp.e62566. ⟨10.3791/62566⟩

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hal-04274577

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Summary: DiCoExpress is a script-based tool implemented in R to perform an RNA-Seq analysis from qua .....

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Journal articles

DOI

DOI : 10.3791/62566

pubmedId

: 35969075

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titre

Untargeted metabolomic analyses reveal the diversity and plasticity of the specialized metabolome in seeds of different Camelina sativa genotypes

auteur

Stéphanie Boutet, Léa Barreda, François Perreau, Jean‐chrisologue Totozafy, Caroline Mauve, Bertrand Gakière, Etienne Delannoy, Marie‐laure Martin-Magniette, Andrea Monti, Loïc Lepiniec, Federica Zanetti, Massimiliano Corso

article

The Plant Journal, 2022, 110 (1), pp.147-165. ⟨10.1111/tpj.15662⟩

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hal-03738690

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Despite the essential role of specialized metabolites (SMs) in the interaction of plants with the en .....

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Journal articles

DOI

DOI : 10.1111/tpj.15662

pubmedId

: 34997644

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International

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titre

Fusarium graminearum infection strategy in wheat involves a highly conserved genetic program that controls the expression of a core effectome

auteur

Florian Rocher, Tarek Alouane, Géraldine Philippe, Marie-Laure Martin, Philippe Label, Thierry Langin, Ludovic Bonhomme

article

International Journal of Molecular Sciences, 2022, 23 (3), pp.22. ⟨10.3390/ijms23031914⟩

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hal-03583788

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Fusarium graminearum, the main causal agent of Fusarium Head Blight (FHB), is one of the most damagi .....

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Journal articles

DOI

DOI : 10.3390/ijms23031914

pubmedId

: 35163834

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International

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titre

A cell wall-associated gene network shapes leaf boundary domains

auteur

Nathalie Bouré, Alexis Peaucelle, Magali Goussot, Bernard Adroher, Ludivine Soubigou-Taconnat, Néro Borrega, Eric Biot, Zakia Tariq, Marie-Laure Martin-Magniette, Véronique Pautot, Patrick Laufs, Nicolas Arnaud

article

Development (Cambridge, England), 2022, 149 (11), pp.dev200359. ⟨10.1242/dev.200359⟩

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hal-03737566

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Boundary domains delimit and organize organ growth throughout plant development almost relentlessly, .....

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Journal articles

DOI

DOI : 10.1242/dev.200359

pubmedId

: 35575098

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International

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titre

A comprehensive map of preferentially located motifs reveals distinct proximal cis -regulatory elements in plants

auteur

Julien Rozière, Cécile Guichard, Véronique Brunaud, Marie-Laure Martin, Sylvie Coursol

article

Frontiers in Plant Science, 2022, 13, pp.976371. ⟨10.3389/fpls.2022.976371⟩

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hal-04400803

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The identification of cis -regulatory elements controlling gene expression is an arduous challenge t .....

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Journal articles

DOI

DOI : 10.3389/fpls.2022.976371

pubmedId

: 36311095

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Journal articles

titre

Systemic control of nodule formation by plant nitrogen demand requires autoregulation-dependent and independent mechanisms

auteur

Marjorie Pervent, Ilana Lambert, Marc Tauzin, Alicia Karouani, Martha Nigg, Marie-Françoise Jardinaud, Dany Severac, Stefano Colella, Marie-Laure Martin-Magniette, Marc Lepetit

article

Journal of Experimental Botany, 2021, 72 (22), pp.7942-7956. ⟨10.1093/jxb/erab374⟩

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hal-03596911

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In legumes interacting with rhizobia, the formation of symbiotic organs involved in the acquisition .....

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Journal articles

DOI

DOI : 10.1093/jxb/erab374

pubmedId

: 34427647

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titre

A Case of Gene Fragmentation in Plant Mitochondria Fixed by the Selection of a Compensatory Restorer of Fertility-Like PPR Gene

auteur

Tan-Trung Nguyen, Noelya Planchard, Jennifer Dahan, Nadège Arnal, Sandrine Balzergue, Abdelilah Benamar, Pierre Bertin, Véronique Brunaud, Céline Dargel-Graffin, David Macherel, Marie-Laure Martin-Magniette, Martine Quadrado, Olivier Namy, Hakim Mireau

article

Molecular Biology and Evolution, 2021, 38 (8), pp.3445 - 3458. ⟨10.1093/molbev/msab115⟩

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hal-05250764

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The high mutational load of mitochondrial genomes combined with their uniparental inheritance and hi .....

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Journal articles

DOI

DOI : 10.1093/molbev/msab115

pubmedId

: 33878189

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titre

Involvement of SUT1 and SUT2 Sugar Transporters in the Impairment of Sugar Transport and Changes in Phloem Exudate Contents in Phytoplasma-Infected Plants

auteur

Federica de Marco, Brigitte Batailler, Michael R. Thorpe, Frédérique Razan, Rozenn Le Hir, Françoise Vilaine, Alain Bouchereau, Marie-Laure Martin-Magniette, Sandrine Eveillard, Sylvie Dinant

article

International Journal of Molecular Sciences, 2021, 22 (2), pp.745. ⟨10.3390/ijms22020745⟩

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hal-02935915

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Phytoplasmas inhabit phloem sieve elements and cause abnormal growth and altered sugar partitioning. .....

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Journal articles

DOI

DOI : 10.3390/ijms22020745

pubmedId

: 33451049

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titre

Error rate control for classification rules in multiclass mixture models

auteur

Tristan Mary-Huard, Vittorio Perduca, Marie-Laure Martin-Magniette, Gilles Blanchard

article

The international journal of biostatistics, 2021, 18 (2), pp.381-396. ⟨10.1515/ijb-2020-0105⟩

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hal-03357461

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In the context of finite mixture models one considers the problem of classifying as many observation .....

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Journal articles

DOI

DOI : 10.1515/ijb-2020-0105

pubmedId

: 34845884

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International

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Journal articles

titre

DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models

auteur

Ilana Lambert, Christine Paysant-Le Roux, Stefano Colella, Marie-Laure Martin-Magniette

article

Plant Methods, 2020, 16 (1), ⟨10.1186/s13007-020-00611-7⟩

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hal-02921433

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Background: RNAseq is nowadays the method of choice for transcriptome analysis. In the last decades, .....

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Journal articles

DOI

DOI : 10.1186/s13007-020-00611-7

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Gene expression predictions and networks in natural populations supports the omnigenic theory

auteur

Aurélien Chateigner, Marie-Claude Lesage-Descauses, Odile Rogier, Véronique Jorge, Jean-Charles Leplé, Véronique Brunaud, Christine Paysant-Le Roux, Ludivine Soubigou-Taconnat, Marie-Laure Martin-Magniette, Léopoldo Sanchez, Vincent Segura

article

BMC Genomics, 2020, 21 (1), pp.1-16. ⟨10.1186/s12864-020-06809-2⟩

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hal-02902844

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Background: Recent literature on the differential role of genes within networks distinguishes core f .....

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DOI

DOI : 10.1186/s12864-020-06809-2

pubmedId

: 32571208

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Identification of a Transcriptomic Prognostic Signature by Machine Learning Using a Combination of Small Cohorts of Prostate Cancer

auteur

Benjamin Vittrant, Mickael Leclercq, Marie-Laure Martin-Magniette, Colin Collins, Alain Bergeron, Yves Fradet, Arnaud Droit

article

Frontiers in Genetics, 2020, 11, ⟨10.3389/fgene.2020.550894⟩

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hal-03269716

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Determining which treatment to provide to men with prostate cancer (PCa) is a major challenge for cl .....

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Journal articles

DOI

DOI : 10.3389/fgene.2020.550894

pubmedId

: 33324443

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Responses of mature symbiotic nodules to the whole-plant systemic nitrogen signaling

auteur

Ilana Lambert, Marjorie Pervent, Antoine Le Quéré, Gilles Clement, Marc Tauzin, Dany Severac, Claire Benezech, Pascal Tillard, Marie-Laure Martin-Magniette, Stefano Colella, Marc Lepetit

article

Journal of Experimental Botany, 2020, 71 (16), pp.5039-5052. ⟨10.1093/jxb/eraa221⟩

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hal-02921428

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In symbiotic root nodules of legumes, terminally differentiated rhizobia fix atmospheric N 2 produci .....

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Journal articles

DOI

DOI : 10.1093/jxb/eraa221

pubmedId

: 32386062

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Immediate targets of ETTIN suggest a key role for pectin methylesterase inhibitors in the control of Arabidopsis gynecium development

auteur

Amélie Andres Robin, Mathieu C Reymond, Géraldine Brunoud, Martin-Magniette Marie-Laure, Françoise Moneger, C.P. Scutt

article

Plant Signaling and Behavior, 2020, 15 (7), pp.1771937. ⟨10.1080/15592324.2020.1771937⟩

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hal-03068443

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The control of gynecium development in Arabidopsis thaliana by the auxin response factor ETTIN (ETT) .....

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DOI

DOI : 10.1080/15592324.2020.1771937

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: 32498600

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Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation

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Thomas Blein, Coline Balzergue, Thomas Roulé, Marc Gabriel, Laetitia Scalisi, Tracy François, Céline Sorin, Aurélie Christ, Christian Godon, Etienne Delannoy, Marie-Laure Martin-Magniette, Laurent Nussaume, Caroline Hartmann, Daniel Gautheret, Thierry Desnos, Martin Crespi

article

Plant Physiology, 2020, 183 (3), pp.1058-1072. ⟨10.1104/pp.20.00446⟩

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cea-02962421

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Thousands of lncRNAs with ecotype-specific expression, including two that likely regulate primary ro .....

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Journal articles

DOI

DOI : 10.1104/pp.20.00446

pubmedId

: 32404413

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Omics data reveal putative regulators of einkorn grain protein composition under sulfur deficiency

auteur

Titouan Bonnot, Pierre Martre, Victor Hatte, Mireille Dardevet, Philippe Leroy, Camille Benard, Natalia Falagan, Marie-Laure Martin-Magniette, Catherine Deborde, Annick Moing, Yves Gibon, Marie Pailloux, Emmanuelle Bancel, Catherine Ravel

article

Plant Physiology, 2020, 183 (2), pp.501-516. ⟨10.1104/pp.19.00842⟩

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hal-02553742

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Understanding the molecular mechanisms controlling the accumulation of grain storage proteins in res .....

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DOI

DOI : 10.1104/pp.19.00842

pubmedId

: 32295821

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The Consequences of a Disruption in Cyto-Nuclear Coadaptation on the Molecular Response to a Nitrate Starvation in Arabidopsis

auteur

Fabien Chardon, Gwendal Cueff, Etienne Delannoy, Fabien Aubé, Aurélia Lornac, Magali Bedu, Françoise Gilard, Stéphanie Pateyron, Hélène Rogniaux, Audrey Gargaros, Hakim Mireau, Loïc Rajjou, Marie-Laure Martin-Magniette, Francoise Budar

article

Plants, 2020, 9 (5), pp.573. ⟨10.3390/plants9050573⟩

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hal-02959209

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Mitochondria and chloroplasts are important actors in the plant nutritional efficiency. So, it could .....

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DOI

DOI : 10.3390/plants9050573

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: 32369924

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Immune-focused multi-omics analysis of prostate cancer: leukocyte Ig-Like receptors are associated with disease progression

auteur

Benjamin Vittrant, Alain Bergeron, Oscar Eduardo Molina, Mickael Leclercq, Xavier-Philippe Légaré, Hélène Hovington, Valérie Picard, Marie-Laure Martin-Magniette, Julie Livingstone, Paul Boutros, Colin Collins, Yves Fradet, Arnaud Droit

article

OncoImmunology, 2020, 9 (1), pp.1851950. ⟨10.1080/2162402X.2020.1851950⟩

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hal-03219229

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Prostate cancer (PCa) immunotherapy has shown limited efficacy so far, even in advanced-stage cancer .....

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Journal articles

DOI

DOI : 10.1080/2162402X.2020.1851950

pubmedId

: 33299664

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A systems biology approach uncovers a gene co-expression network associated with cell wall degradability in maize

auteur

Clément Cuello, Aurélie Baldy, Véronique Brunaud, Johann Joets, Etienne Delannoy, Marie-Pierre Jacquemot, Lucy Botran, Yves Griveau, Cécile Guichard, Ludivine Soubigou-Taconnat, Marie-Laure Martin-Magniette, Philippe Leroy, Valérie Méchin, Matthieu Reymond, Sylvie Coursol

article

PLoS ONE, 2019, 14 (12), pp.e0227011. ⟨10.1371/journal.pone.0227011⟩

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hal-02429157

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Understanding the mechanisms triggering variation of cell wall degradability is a prerequisite to im .....

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DOI

DOI : 10.1371/journal.pone.0227011

pubmedId

: 31891625

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In situ transcriptomic and metabolomic study of the loss of photosynthesis in the leaves of mixotrophic plants exploiting fungi

auteur

Félix Lallemand, Marie-Laure Martin-Magniette, Françoise Gilard, Françoise Gilard, Bertrand Gakière, Alexandra Launay-Avon, Etienne Delannoy, Marc-André Selosse

article

The Plant Journal, 2019, 98 (5), pp.826-841. ⟨10.1111/tpj.14276⟩

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hal-02617745

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Mycoheterotrophic plants have lost photosynthesis and obtain carbon through mycorrhizal fungi coloni .....

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Journal articles

DOI

DOI : 10.1111/tpj.14276

pubmedId

: 30735596

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titre

Large-Scale Automatic Feature Selection for Biomarker Discovery in High-Dimensional OMICs Data

auteur

Mickael Leclercq, Benjamin Vittrant, Marie-Laure Magniette, Marie Pier Scott Boyer, Olivier Perin, Alain Bergeron, Yves Fradet, Arnaud Droit

article

Frontiers in Genetics, 2019, 10, pp.452. ⟨10.3389/fgene.2019.00452⟩

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hal-02623625

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The identification of biomarker signatures in omics molecular profiling is usually performed to pred .....

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Journal articles

DOI

DOI : 10.3389/fgene.2019.00452

pubmedId

: 31156708

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Novel cytonuclear combinations modify Arabidopsis thaliana seed physiology and vigor

auteur

Clément Boussardon, Marie-Laure Martin-Magniette, Béatrice Godin, Abdelilah Benamar, Benjamin Vittrant, Sylvie Citerne, Tristan Mary-Huard, David Macherel, Loïc Rajjou, Françoise Budar

article

Frontiers in Plant Science, 2019, 10, pp.32. ⟨10.3389/fpls.2019.00032⟩

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hal-02557423

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Dormancy and germination vigor are complex traits of primary importance for adaptation and agricultu .....

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Journal articles

DOI

DOI : 10.3389/fpls.2019.00032

pubmedId

: 30804952

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International

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titre

Sampling uncertainty versus method uncertainty: A general framework with applications to omics biomarker selection

auteur

Simon Klau, Marie-Laure Martin-Magniette, Anne-Laure Boulesteix, Sabine Hoffmann

article

Biometrical Journal, 2019, 62 (3), pp.670-687. ⟨10.1002/bimj.201800309⟩

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hal-02618372

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Uncertainty is a crucial issue in statistics which can be considered from different points of view. .....

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Journal articles

DOI

DOI : 10.1002/bimj.201800309

pubmedId

: 31099917

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International

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Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat

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Elodie Rey, Michaël M. Abrouk, Gabriel Keeble-Gagnère, Miroslava Karafiatova, Jan Vrána, Sandrine Balzergue, Ludivine Soubigou-Taconnat, Véronique Brunaud, Marie-Laure Magniette, Takashi R. Endo, Jan Bartos, Rudi Appels, Jaroslav Dolezel

article

Plant Biotechnology Journal, 2018, 16 (10), pp.1767-1777. ⟨10.1111/pbi.12913⟩

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hal-02621747

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Despite a long history, the production of useful alien introgression lines in wheat remains difficul .....

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Journal articles

DOI

DOI : 10.1111/pbi.12913

pubmedId

: 29510004

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International

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Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo

auteur

Kaori Sakai, Ludivine Taconnat, Néro Borrega, Jennifer Yansouni, Véronique Brunaud, Christine Paysant-Le Roux, Etienne Delannoy, Marie-Laure Martin Magniette, Loic Lepiniec, Jean Denis Faure, Sandrine Balzergue, Bertrand Dubreucq

article

Plant Methods, 2018, 14, pp.10. ⟨10.1186/s13007-018-0275-x⟩

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hal-02625394

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Background: Genome- wide characterization of tissue- or cell-specific gene expression is a recurrent .....

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Journal articles

DOI

DOI : 10.1186/s13007-018-0275-x

pubmedId

: 29434651

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International

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Genetic variability of the phloem sap metabolite content of maize (Zea mays L.) during the kernel-filling period (vol 252, pg 347, 2016)

auteur

Zhazira Yesbergenova-Cuny, Sylvie Dinant, Marie-Laure Martin-Magniette, Isabelle Quillere, Patrick P. Armengaud, Priscilla Monfalet, Peter J. Lea, Bertrand Hirel

article

Plant Science, 2018, 272, pp.207-207. ⟨10.1016/j.plantsci.2018.04.022⟩

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hal-02618059

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Journal articles

DOI

DOI : 10.1016/j.plantsci.2018.04.022

pubmedId

: 29807592

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International

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Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways during ethephon stimulation and consequent Tapping Panel Dryness

auteur

Pascal Montoro, Shuangyang Wu, Bénédicte Favreau, Eva Herlinawati, Cécile Labrune, Marie-Laure Magniette, Stéphanie Pointet, Maryannick Rio, Julie Leclercq, Sigit Ismawanto, - Kuswanhadi

article

Scientific Reports, 2018, 8, pp.8483. ⟨10.1038/s41598-018-26854-y⟩

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hal-02624945

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Tapping Panel Dryness (TPD) affects latex production in Hevea brasiliensis. This physiological syndr .....

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Journal articles

DOI

DOI : 10.1038/s41598-018-26854-y

pubmedId

: 29855601

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International

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Nitrogen limitation alters the response of specific genes to biotic stress

auteur

Mahsa Farjad, Martine Rigault, Stephanie Pateyron, Marie-Laure Martin-Magniette, Annemarie Krapp, Christian Meyer, Mathilde Fagard

article

International Journal of Molecular Sciences, 2018, 19 (11), pp.3364. ⟨10.3390/ijms19113364⟩

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hal-02625219

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In their natural environment, plants are generally confronted with multiple co-occurring stresses. H .....

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Journal articles

DOI

DOI : 10.3390/ijms19113364

pubmedId

: 30373239

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International

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Journal articles

titre

Genetic variability of the phloem sap metabolite content of maize ([i]Zea mays[/i] L.) during the kernel-filling period

auteur

Zhazira Yesbergenova-Cuny, Sylvie Dinant, Marie-Laure Magniette, Isabelle Quillere, Patrick Armengaud, Priscilla Monfalet, Peter J. Lea, Bertrand Hirel

article

Plant Science, 2016, 252, pp.347-357. ⟨10.1016/j.plantsci.2016.08.007⟩

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hal-01363555

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Using a metabolomic approach, we have quantified the metabolite composition of the phloem sap exudat .....

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Journal articles

DOI

DOI : 10.1016/j.plantsci.2016.08.007

pubmedId

: 27717471

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Not specified

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titre

Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis

auteur

Guillem Rigaill, Sandrine Balzergue, Véronique Brunaud, Eddy Blondet, Andrea Rau, Odile Rogier, José Caius, Cathy Maugis Rabusseau, Ludivine Soubigou-Taconnat, Sébastien Aubourg, Claire Lurin, Marie-Laure Magniette, Etienne Delannoy

article

Briefings in Bioinformatics, 2016, 19 (1), pp.65-76. ⟨10.1093/bib/bbw092⟩

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hal-01595551

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Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis

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Journal articles

DOI

DOI : 10.1093/bib/bbw092

pubmedId

: 27742662

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Not specified

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On the estimation of mixtures of Poisson regression models with large number of components

auteur

Panagiotis Papastamoulis, Marie-Laure Magniette, Cathy Maugis-Rabusseau

article

Computational Statistics and Data Analysis, 2016, 93, pp.97-106. ⟨10.1016/j.csda.2014.07.005⟩

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hal-01532512

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Modelling heterogeneity in large datasets of counts under the presence of covariates demands advance .....

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DOI

DOI : 10.1016/j.csda.2014.07.005

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titre

Altered DNA methylation associated with an abnormal liver phenotype in a cattle model with a high incidence of perinatal pathologies

auteur

Hélène Kiefer, Luc Jouneau, Evelyne E. Campion, Delphine Rousseau-Ralliard, Thibaut Larcher, Marie-Laure Martin Magniette, Sandrine Balzergue, Mireille Ledevin, Audrey Prézelin, Pascale Chavatte-Palmer, Yvan Heyman, Christophe Richard, Daniel D. Le Bourhis, Jean-Paul Renard, Hélène Jammes

article

Scientific Reports, 2016, 6, pp.38869. ⟨10.1038/srep38869⟩

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hal-02633915

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Cloning enables the generation of both clinically normal and pathological individuals from the same .....

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Journal articles

DOI

DOI : 10.1038/srep38869

pubmedId

: 27958319

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International

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titre

Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field

auteur

Fabrice Roux, Tristan Mary-Huard, Elise Barillot, Estelle Wenes, Lucy Botran, Stéphanie S. Durand, Romain Villoutreix, Martin-Magniette Marie-Laure, Christine C. Camilleri, Francoise Budar

article

Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (13), pp.3687-3682. ⟨10.1073/pnas.1520687113⟩

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hal-01294000

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Although the contribution of cytonuclear interactions to plant fitness variation is relatively well .....

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Journal articles

DOI

DOI : 10.1073/pnas.1520687113

pubmedId

: 26979961

audience

International

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titre

Co-expression analysis of high-throughput transcriptome sequencing data with Poisson mixture models

auteur

Andrea Rau, Cathy Maugis-Rabusseau, Marie-Laure Magniette, Gilles Celeux

article

Bioinformatics, 2015, 31 (9), pp.1420-1427. ⟨10.1093/bioinformatics/btu845⟩

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hal-01108821

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In recent years, gene expression studies have increasingly made use of high-throughput sequencing te .....

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Journal articles

DOI

DOI : 10.1093/bioinformatics/btu845

pubmedId

: 25563332

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International

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titre

GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response

auteur

Rim Zaag, Jean-Philippe Tamby, Cecile Guichard, Zakia Tariq, Guillem Rigaill, Etienne Delannoy, Jean-Pierre Renou, Sandrine Balzergue, Tristan Mary-Huard, Sebastien Aubourg, Marie-Laure Magniette, Veronique Brunaud

article

Nucleic Acids Research, 2015, 43 (Database issue), pp.D1010-D1017. ⟨10.1093/nar/gku1155⟩

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hal-01137554

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CATdb (http://urgv.evry.inra.fr/CATdb) is a database providing a public access to a large collection .....

typdoc

Journal articles

DOI

DOI : 10.1093/nar/gku1155

pubmedId

: 25392409

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Not specified

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titre

Salmonella enterica Flagellin Is Recognized via FLS2 and Activates PAMP-Triggered Immunity in Arabidopsis thaliana

auteur

Ana Victoria Garcia Malervi, Amélie Charrier, Adam Schikora, Jean Bigeard, Stephanie Pateyron, Marie-Ludivine de Tauzia - Moreau, Alexandre Evrard, Axel Mithoefer, Marie-Laure Magniette, Isabelle Payant, Heribert Hirt

article

Molecular Plant, 2014, 7 (4), pp.657 - 674. ⟨10.1093/mp/sst145⟩

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hal-01197624

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Infections with Salmonella enterica belong to the most prominent causes of food poisoning and infect .....

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Journal articles

DOI

DOI : 10.1093/mp/sst145

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Not specified

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titre

Widespread anti-sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post-transcriptional control

auteur

Jean-Marc Celton, Sylvain Gaillard, Maryline Bruneau, Sandra Pelletier, Sebastien Aubourg, Marie-Laure Magniette, Lionel Navarro, Francois Laurens, Jean-Pierre Renou

article

New Phytologist, 2014, 203 (1), pp.287-299. ⟨10.1111/nph.12787⟩

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hal-01209978

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Characterizing the transcriptome of eukaryotic organisms is essential for studying gene regulation a .....

typdoc

Journal articles

DOI

DOI : 10.1111/nph.12787

pubmedId

: 24690119

audience

Not specified

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titre

Unexpectedly low nitrogen acquisition and absence of root architecture adaptation to nitrate supply in a [i]Medicago truncatula[/i] highly branched root mutant

auteur

Virginie Bourion, Chantal Martin, Henri de Larambergue, Françoise Jacquin, Gregoire Aubert, Marie-Laure Magniette, Sandrine Balzergue, Geoffroy Lescure, Sylvie Citerne, Marc Lepetit, Nathalie G. Munier-Jolain, Christophe Salon, Gérard Duc

article

Journal of Experimental Botany, 2014, 65 (9), pp.2365-2380. ⟨10.1093/jxb/eru124⟩

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hal-01197628

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To complement N-2 fixation through symbiosis, legumes can efficiently acquire soil mineral N through .....

typdoc

Journal articles

DOI

DOI : 10.1093/jxb/eru124

pubmedId

: 24706718

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Not specified

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titre

Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences

auteur

Nicolas Frei Dit Frey, Anna Victoria Garcia, Jean Bigeard, Rim Zaag, Eduardo Bueso, Marie Garmier, Stephanie S. Pateyron, Marie-Ludivine de Tauzia - Moreau, Veronique V. Brunaud, Sandrine Balzergue, Jean Colcombet, Sebastien S. Aubourg, Marie-Laure Martin-Magniette, Heribert Hirt

article

Genome Biology, 2014, 15 (6), pp.R87. ⟨10.1186/gb-2014-15-6-r87⟩

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hal-02631808

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Background : Mitogen-activated protein kinases (MAPKs) are key regulators of immune responses in ani .....

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Journal articles

DOI

DOI : 10.1186/gb-2014-15-6-r87

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International

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titre

Comparing Model Selection and Regularization Approaches to Variable Selection in Model-Based Clustering

auteur

Gilles Celeux, Marie-Laure Martin-Magniette, Cathy Maugis, Adrian E. Raftery

article

Journal de la Société Française de Statistique, 2014, 155 (2), pp.57-71

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hal-00943473

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We compare two major approaches to variable selection in clustering: model selection and regularizat .....

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Journal articles

pubmedId

: 25279246

audience

International

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titre

Hidden Markov Models with mixtures as emission distributions

auteur

Stevenn Volant, Caroline Bérard, Marie-Laure Martin-Magniette, Stéphane Robin

article

Statistics and Computing, 2014, 24 (4), pp.493-504. ⟨10.1007/s11222-013-9383-7⟩

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hal-04609312

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In unsupervised classification, Hidden Markov Models (HMM) are used to account for a neighborhood st .....

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Journal articles

DOI

DOI : 10.1007/s11222-013-9383-7

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International

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Differential gene expression and metabolomic analyses of Brachypodium distachyon infected by deoxynivalenol producing and non-producing strains of Fusarium graminearum.

auteur

J.C. Pasquet, S. Chaouch, C. Macadré, S. Balzergue, S. Huguet, M.L. Martin-Magniette, F. Bellvert, X. Deguercy, V. Thareau, Dimitri Heintz, Patrick Saindrenan, Marie Dufresne

article

BMC Genomics, 2014, 15, pp.629. ⟨10.1186/1471-2164-15-629⟩

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hal-01063227

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Background: Fusarium Head Blight (FHB) caused primarily by Fusarium graminearum (Fg) is one of the m .....

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Journal articles

DOI

DOI : 10.1186/1471-2164-15-629

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International

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titre

The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana

auteur

Heike Lange, Hélène Zuber, François M. Sement, Johanna Chicher, Lauriane Kuhn, Philippe Hammann, Veronique Brunaud, Caroline Berard, Nathalie Bouteiller, Sandrine Balzergue, Sebastien Aubourg, Marie-Laure Magniette, Herve Vaucheret, Dominique Gagliardi

article

PLoS Genetics, 2014, 10 (8), pp.e1004564. ⟨10.1371/journal.pgen.1004564⟩

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hal-01197631

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The RNA exosome is the major 3'-5' RNA degradation machine of eukaryotic cells and participates in p .....

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Journal articles

DOI

DOI : 10.1371/journal.pgen.1004564

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Not specified

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Journal articles

titre

Genetic variability of berry size in grapevine (Vitis vinifera L.)

auteur

Cléa Houel, Marie-Laure Magniette, Stéphane D. Nicolas, Thierry Lacombe, Loic Le Cunff, Damien Franck, Laurent Torregrosa, Geneviève Conejero, Sandrine Lalet, Patrice This, Anne-Francoise Adam-Blondon

article

Australian Journal of Grape and Wine Research, 2013, 19 (2), pp.208-220. ⟨10.1111/ajgw.12021⟩

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hal-01223540

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Background and Aims: Berry weight in the grapevine, as in the tomato, is variable, ranging from less .....

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Journal articles

DOI

DOI : 10.1111/ajgw.12021

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Not specified

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titre

MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates

auteur

Caroline Berard, Michael Seifert, Tristan Mary-Huard, Marie-Laure Magniette

article

BMC Bioinformatics, 2013, 14, ⟨10.1186/1471-2105-14-271⟩

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hal-01190745

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Background: Chromatin immunoprecipitation coupled with hybridization to a tiling array (ChIP-chip) i .....

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Journal articles

DOI

DOI : 10.1186/1471-2105-14-271

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Not specified

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Journal articles

titre

A Light-Regulated Genetic Module Was Recruited to Carpel Development in Arabidopsis following a Structural Change to SPATULA

auteur

Matthieu Reymond, Geraldine Brunoud, Aurélie Chauvet, Jaime F. Martinez-Garcia, Marie-Laure Magniette, Françoise Monéger, C.P. Scutt

article

The Plant cell, 2012, 24 (7), pp.2812 - 2825. ⟨10.1105/tpc.112.097915⟩

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hal-01003413

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A key innovation of flowering plants is the female reproductive organ, the carpel. Here, we show tha .....

typdoc

Journal articles

DOI

DOI : 10.1105/tpc.112.097915

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Not specified

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titre

A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments

auteur

David Rengel, Sandrine Arribat, Pierre Maury, Marie-Laure Martin-Magniette, Thibault Hourlier, Marion Laporte, Didier Vares, Sebastien Carrere, Philippe Grieu, Sandrine Balzergue, Jerome Gouzy, Patrick P. Vincourt, Nicolas Langlade

article

PLoS ONE, 2012, 7 (10), pp.e45249. ⟨10.1371/journal.pone.0045249⟩

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hal-02644423

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Identifying the connections between molecular and physiological processes underlying the diversity o .....

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DOI

DOI : 10.1371/journal.pone.0045249

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International

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titre

Inférence de réseaux de régulation de gènes au travers de scores étendus dans les réseaux bayésiens

auteur

Jimmy Vandel, Brigitte Mangin, Matthieu Vignes, Damien Leroux, Olivier Loudet, Marie-Laure Magniette, Simon de Givry

article

Revue des Sciences et Technologies de l'Information - Série RIA : Revue d'Intelligence Artificielle, 2012, 26 (6), pp.679-708. ⟨10.3166/ria.26.679-708⟩

identifiant

hal-01197611

Resume_court

Inferring gene regulatory networks tends to use several biological information. Here we use data fro .....

typdoc

Journal articles

DOI

DOI : 10.3166/ria.26.679-708

audience

Not specified

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titre

SelvarClustMV: Variable selection approach in model-based clustering allowing for missing values

auteur

Cathy Maugis-Rabusseau, Martin-Magniette Marie-Laure, Pelletier Sandra

article

Journal de la Société Française de Statistique, 2012, 15 (2), pp.21-36

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hal-00972003

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Overabundance of clustering methods exists but none was devised with a variable selection procedure .....

typdoc

Journal articles

audience

National

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titre

Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures

auteur

Francisco Cubillos, Jennifer Yansouni, Ahmid Khalili, Sandrine Balzergue, Samira Elftieh, Marie-Laure Magniette, Yann Serrand, Loic Lepiniec, Sebastien S. Baud, Bertrand Dubreucq, Jean-Pierre Renou, Christine Camilleri, Olivier Loudet

article

BMC Genomics, 2012, 13, pp.1-12. ⟨10.1186/1471-2164-13-117⟩

identifiant

hal-01189696

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Background: Expression traits can vary quantitatively between individuals and have a complex inherit .....

typdoc

Journal articles

DOI

DOI : 10.1186/1471-2164-13-117

audience

Not specified

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titre

Variational Bayes approach for model aggregation in unsupervised classification with Markovian dependency

auteur

Stevenn Volant, Marie-Laure Magniette Martin-Magniette, Stephane S. Robin

article

Computational Statistics and Data Analysis, 2012, 56 (8), pp.2375-2387. ⟨10.1016/j.csda.2012.01.027⟩

identifiant

hal-01000046

Resume_court

A binary unsupervised classification problem where each observation is associated with an unobserved .....

typdoc

Journal articles

DOI

DOI : 10.1016/j.csda.2012.01.027

audience

Not specified

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Journal articles

titre

Genomic approach to study floral development genes in Rosa sp.

auteur

Annick Dubois, Arnaud A. Remay, Olivier Raymond, Sandrine Balzergue, Aurélie Chauvet, Marion Maene, Yann Pécrix, Shu-Hua Yang, Julien Jeauffre, Tatiana Thouroude, Véronique Boltz, Marie-Laure Martin-Magniette, Stéphane Janczarski, Fabrice Legeai, Jean-Pierre Renou, Philippe Vergne, Manuel Le Bris, Fabrice Foucher, Mohammed Bendahmane

article

PLoS ONE, 2011, 6 (12), ⟨10.1371/journal.pone.0028455⟩

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hal-00753396

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Cultivated for centuries, the varieties of rose have been selected based on a number of flower trait .....

typdoc

Journal articles

DOI

DOI : 10.1371/journal.pone.0028455

pubmedId

: 22194838

audience

International

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titre

Variable selection in model-based discriminant analysis

auteur

Cathy Maugis, Gilles Celeux, Marie-Laure Martin-Magniette

article

Journal of Multivariate Analysis, 2011, 102 (10), pp.1374-1387. ⟨10.1016/j.jmva.2011.05.004⟩

identifiant

hal-00666826

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A general methodology for selecting predictors for Gaussian generative classification models is pres .....

typdoc

Journal articles

DOI

DOI : 10.1016/j.jmva.2011.05.004

audience

International

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titre

Unsupervised Classification for Tiling Arrays: ChIP-chip and Transcriptome

auteur

Caroline Berard, Marie-Laure Magniette, Veronique Brunaud, Sebastien Aubourg, Stephane Robin

article

Statistical Applications in Genetics and Molecular Biology, 2011, 10 (1), pp.50. ⟨10.2202/1544-6115.1692⟩

identifiant

hal-01190201

Resume_court

Tiling arrays make possible a large-scale exploration of the genome thanks to probes which cover the .....

typdoc

Journal articles

DOI

DOI : 10.2202/1544-6115.1692

audience

Not specified

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titre

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

auteur

François Roudier, Ikhlak Ahmed, Caroline Bérard, Alexis Sarazin, Tristan Mary-Huard, Sandra Cortijo, Daniel Bouyer, Erwann Caillieux, Evelyne Duvernois-Berthet, Liza Al-Shikhley, Laurène Giraut, Barbara Després, Stéphanie Drevensek, Frédy Barneche, Sandra Dèrozier, Véronique Brunaud, Sébastien Aubourg, Arp Schnittger, Chris Bowler, Marie-Laure Martin-Magniette, Stéphane Robin, Michel Caboche, Vincent Colot

article

The EMBO Journal, 2011, 30 (10), pp.1928-1938. ⟨10.1038/emboj.2011.103⟩

identifiant

hal-04383147

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Post-translational modification of histones and DNA methylation are important components of chromati .....

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Journal articles

DOI

DOI : 10.1038/emboj.2011.103

audience

International

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titre

Letter to the Editor

auteur

Gilles Celeux, Marie-Laure Martin-Magniette, Cathy Maugis, Raftery Adrian

article

Journal of the American Statistical Association, 2011, 106, pp.383-383

identifiant

hal-00944081

Resume_court

no abstract

typdoc

Journal articles

audience

International

Accès au bibtex

titre

Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

auteur

Patricia P. Faivre-Rampant, Isabelle Lesur, Clément Boussardon, Frederique Bitton, Marie-Laure Martin-Magniette, Catherine Bodenes-Brezard, Grégoire G. Le Provost, Helene H. Berges, Sylvia Fluch, Antoine Kremer, Christophe Plomion

article

BMC Genomics, 2011, 12, 13 p. ⟨10.1186/1471-2164-12-292⟩

identifiant

hal-02646702

Resume_court

Background : One of the key goals of oak genomics research is to identify genes of adaptive signific .....

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Journal articles

DOI

DOI : 10.1186/1471-2164-12-292

audience

International

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titre

Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids

auteur

Ali M. Banaei Moghaddam, François Roudier, Michael Seifert, Caroline Bérard, Marie-Laure Martin-Magniette, Raheleh Karimi Ashtiyani, Andreas Houben, Vincent Colot

article

The Plant Journal, 2011, 67 (4), pp.691-700. ⟨10.1111/j.1365-313X.2011.04628.x⟩

identifiant

hal-02645621

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Plant genomes are earmarked with defined patterns of chromatin marks. Little is known about the stab .....

typdoc

Journal articles

DOI

DOI : 10.1111/j.1365-313X.2011.04628.x

audience

International

Accès au texte intégral et bibtex

titre

Letter to the editor: ''{A} framework for feature selection in clustering

auteur

Gilles Celeux, Marie-Laure Martin-Magniette, Cathy Maugis, Adrian E. Raftery

article

Journal of the American Statistical Association, 2011, 106 (493), pp.383. ⟨10.1198/jasa.2011.tm10681⟩

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hal-00666845

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Journal articles

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DOI : 10.1198/jasa.2011.tm10681

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International

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Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes.

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David Cohen, Marie-Béatrice Bogeat-Triboulot, Emilie Tisserant, Sandrine Balzergue, Marie-Laure Martin-Magniette, Gaëlle Lelandais, Nathalie Ningre, Jean-Pierre Renou, Jean-Philippe Tamby, Didier Le Thiec, Irène Hummel

article

BMC Genomics, 2010, 11 (1), pp.630. ⟨10.1186/1471-2164-11-630⟩

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inserm-00663875

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BACKGROUND: Comparative genomics has emerged as a promising means of unravelling the molecular netwo .....

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DOI : 10.1186/1471-2164-11-630

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: 21073700

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International

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Brain transcriptional stability upon prion protein-encoding gene invalidation in zygotic or adult mouse

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Sead Chadi, Rachel Young, Sandrine Le Guillou, Gaëlle Tilly, Frederique Bitton, Marie-Laure Magniette, Ludivine Soubigou-Taconnat, Sandrine Balzergue, Jean-Luc Vilotte, Coralie Peyre, Bruno Passet, Vincent Béringue, Jean-Pierre Renou, Fabienne Le Provost, Hubert Laude

article

BMC Genomics, 2010, 11, online (july), Non paginé. ⟨10.1186/1471-2164-11-448⟩

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hal-01193445

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Background: The physiological function of the prion protein remains largely elusive while its key ro .....

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DOI : 10.1186/1471-2164-11-448

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Transcriptomic Analysis Highlights Time-specific Embryonic Adaptation of Mice to the Lack of PrP

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Manal Khalife, Rachel Young, Sead Chadi, Sandrine Le Guillou, Lucas Lefevre, Gaëlle Tilly, Frédérique Bitton, Marie-Laure Martin-Magniette, Ludivine Soubigou-Taconnat, Sandrine Balzergue, Marthe Vilotte, Bruno Passet, Vincent Béringue, Jean-Pierre Renou, Fabienne Le Provost, Hubert Laude, Jean-Luc Vilotte

article

Prion, 2010, 4 (3), Non spécifié. ⟨10.4161/pri.12773⟩

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hal-03339362

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The physiological function of the PrP remains largely elusive. Its invalidation does not affect m .....

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DOI : 10.4161/pri.12773

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International

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Transcriptome Analysis Describing New Immunity and Defense Genes in Peripheral Blood Mononuclear Cells of Rheumatoid Arthritis Patients

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Vitor Hugo Teixeira, Robert Olaso, Marie-Laure Magniette, Sandra Lasbleiz, Laurent Jacq, Catarina Resende Oliveira, Pascal Hilliquin, Ivo Gut, François Cornelis, Elisabeth Petit-Teixeira

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PLoS ONE, 2009, 4 (8), pp.e6803. ⟨10.1371/journal.pone.0006803⟩

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hal-01197552

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Background: Large-scale gene expression profiling of peripheral blood mononuclear cells from Rheumat .....

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DOI : 10.1371/journal.pone.0006803

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Estimation of the hazard function in a semiparametric model with covariate measurement error

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Marie-Laure Martin-Magniette, Marie-Luce Taupin

article

ESAIM: Probability and Statistics, 2009, 13, pp.87-114. ⟨10.1051/ps:2008004⟩

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hal-00480192

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We consider a failure hazard function, conditional on a time-independent covariate , given by . The .....

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DOI

DOI : 10.1051/ps:2008004

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International

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Sélection de variables pour la classification par mélanges gaussiens pour prédire la fonction des gènes orphelins

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Cathy Maugis, Marie-Laure Martin-Magniette, Jean-Philippe Tamby, Jean-Pierre Renou, Alain Lecharny, Sebastien Aubourg, Gilles Celeux

article

La revue MODULAD, 2009, 40, pp.69-80

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hal-01197529

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Biologists are interested in predicting the gene functions of sequenced genome organisms according t .....

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Identification of germinal disk region derived genes potentially involved in hen fertility

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Sébastien Elis, Elisabeth Blesbois, Isabelle Couty, Sandrine Balzergue, Marie-Laure Martin-Magniette, Florence Batellier, Marina Govoroun

article

Molecular Reproduction and Development, 2009, 76 (11), pp.1043-1055. ⟨10.1002/mrd.21062⟩

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hal-02666532

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Despite the regular decrease in fertility observed in hens, especially in "meat" lines, little is kn .....

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DOI : 10.1002/mrd.21062

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International

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Mélanges gaussiens bidimensionnels pour la comparaison de deux échantillons de chromatine immunoprécipitée

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Caroline Berard, Marie-Laure Martin-Magniette, Alexandra To, François Roudier, Vincent Colot, Stephane Robin

article

La revue MODULAD, 2009, 40, pp.53-68

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hal-01197565

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Chromatin immunoprecipitation (ChIP) enables to investigate interactions between proteins and DNA an .....

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ChIPmix: mixture model of regressions for two-color ChIP-chip analysis

auteur

Marie-Laure Magniette, Tristan Mary-Huard, Caroline Berard, Stephane Robin

article

Bioinformatics, 2008, 24 (16), pp.i181-i186. ⟨10.1093/bioinformatics/btn280⟩

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hal-01197653

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Chromatin immunoprecipitation (ChIP) combined with DNA microarray is a high-throughput technology to .....

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DOI : 10.1093/bioinformatics/btn280

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: 18689822

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Transcriptional and Metabolic Adjustments in ADP-Glucose pyrophosphorylase -deficient bt2 Maize kernels

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Magalie Cossegal, Pierre Chambrier, Sylvie Mbelo, S. Balzergue, Marie-Laure Martin-Magniette, Annick Moing, Catherine Deborde, V. Guyon, Patrick Pérez, Peter Rogowsky

article

Plant Physiology, 2008, 146 (4), pp.1553-1570. ⟨10.1104/pp.107.112698⟩

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hal-00412597

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During the cloning of monogenic recessive mutations responsible for a defective kernel phenotype in .....

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DOI : 10.1104/pp.107.112698

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International

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Systemic Signaling of the Plant Nitrogen Status Triggers Specific Transcriptome Responses Depending on the Nitrogen Source in Medicago truncatula.

auteur

Sandrine Ruffel, Sandra Freixes, Sandrine Balzergue, Pascal Tillard, Christian Jeudy, Marie Laure Martin-Magniette, Margaretha J van Der Merwe, Klementina Kakar, Jerome Gouzy, Alisdair R Fernie, Michael K. Udvardi, Christophe Salon, Alain Gojon, Marc Lepetit

article

Plant Physiology, 2008, 146 (4), pp.2020-2035. ⟨10.1104/pp.107.115667⟩

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hal-00275798

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Legumes can acquire nitrogen (N) from NO(3)(-), NH(4)(+), and N(2) (through symbiosis with Rhizobium .....

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Journal articles

DOI

DOI : 10.1104/pp.107.115667

pubmedId

: 18287487

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CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform

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Séverine Gagnot, Jean-Philippe Tamby, Marie-Laure Magniette, Frederique Bitton, Ludivine Taconnat, Sandrine Balzergue, Sebastien Aubourg, Jean-Pierre Renou, Alain Lecharny, Veronique Brunaud

article

Nucleic Acids Research, 2008, 36, pp.D986-D990. ⟨10.1093/nar/gkm757⟩

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hal-01203869

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CATdb is a free resource available at http://urgv.evry.inra.fr/CATdb that provides public access to .....

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DOI

DOI : 10.1093/nar/gkm757

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Differential gene expression of the honey bee Apis mellifera associated with Varroa destructor infection

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Maria Navajas, Alain Migeon, C. Alaux, Marie-Laure Martin-Magniette, G.E. Robinson, J.D. Evans, Sandrine Cros-Arteil, Didier Crauser, Yves Le Conte

article

BMC Genomics, 2008, 9, pp.301. ⟨10.1186/1471-2164-9-301⟩

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hal-02659274

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Background: The parasitic mite, Varroa destructor, is the most serious pest of the western honey bee .....

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DOI : 10.1186/1471-2164-9-301

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International

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Normalization for triple-target microarray experiments

auteur

Marie-Laure Magniette, Julie Aubert, Avner Bar-Hen, Samira Elftieh, Fréderic Magniette, Jean-Pierre Renou, Jean-Jacques Daudin

article

BMC Bioinformatics, 2008, 9, pp.216. ⟨10.1186/1471-2105-9-216⟩

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hal-01197566

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Most microarray studies are made using labelling with one or two dyes which allows the hybridization .....

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DOI

DOI : 10.1186/1471-2105-9-216

pubmedId

: 18442385

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International

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Search for the genes involved in oocyte maturation and early embryo development in the hen

auteur

Sébastien Elis, Florence Batellier, Isabelle Couty, Sandrine Balzergue, Marie-Laure Martin-Magniette, Philippe Monget, Elisabeth Blesbois, Marina Govoroun

article

BMC Genomics, 2008, 9, pp.1-20. ⟨10.1186/1471-2164-9-110⟩

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hal-02666483

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Background: The initial stages of development depend on mRNA and proteins accumulated in the oocyte, .....

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DOI : 10.1186/1471-2164-9-110

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International

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Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5

auteur

Moussa Benhamed, Marie-Laure Martin-Magniette, Ludivine Taconnat, Frederique Bitton, Caroline Servet, Rebecca de Clercq, Bjorn de Meyer, Caroline Buysschaert, Stephane Rombauts, Raimundo Villarroel, Sebastien S. Aubourg, Jim Beynon, Rishikesh P. Bhalerao, George Coupland, Wilhelm Gruissem, Frank L.H. Menke, Bernd Weisshaar, Jean-Pierre Renou, Dao-Xiu Zhou, Pierre Hilson

article

The Plant Journal, 2008, 56 (3), pp.493-504. ⟨10.1111/j.1365-313X.2008.03606.x⟩

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hal-02659090

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We have assembled approximately 20 000 Arabidopsis thaliana promoter regions, compatible with functi .....

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DOI

DOI : 10.1111/j.1365-313X.2008.03606.x

pubmedId

: 18644002

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International

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Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance.

auteur

Fanny Ramel, Cécile Sulmon, Francisco Cabello-Hurtado, Ludivine Taconnat, Marie-Laure Martin-Magniette, Jean-Pierre Renou, Abdelhak El Amrani, Ivan Couée, Gwenola Gouesbet

article

BMC Genomics, 2007, 8, pp.450. ⟨10.1186/1471-2164-8-450⟩

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hal-00264268

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Background: Soluble sugars, which play a central role in plant structure and metabolism, are also in .....

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DOI : 10.1186/1471-2164-8-450

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International

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Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27

auteur

Franziska Turck, François Roudier, Sara Farrona, Marie-Laure Martin-Magniette, Elodie Guillaume, Nicolas Buisine, Séverine Gagnot, Robert A. Martienssen, George Coupland, Vincent Colot

article

PLoS Genetics, 2007, 3 (6), pp.855-866. ⟨10.1371/journal.pgen.0030086⟩

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hal-02663914

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TERMINAL FLOWER 2/LIKE HETEROCHROMATIN PROTEIN 1 (TFL2/LHP1) is the only Arabidopsis protein with ov .....

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DOI : 10.1371/journal.pgen.0030086

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International

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Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome

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Sebastien S. Aubourg, Marie-Laure Martin-Magniette, Veronique V. Brunaud, Ludivine Taconnat, Frederique Bitton, Sandrine Balzergue, Pauline E. Jullien, Mathieu Ingouff, Vincent Thareau, Thomas Schiex, Alain Lecharny, Jean-Pierre J.-P. Renou

article

BMC Genomics, 2007, 8 (401), pp.1-9. ⟨10.1186/1471-2164-8-401⟩

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hal-02668276

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Background: Since the finishing of the sequencing of the Arabidopsis thaliana genome, the Arabidopsi .....

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DOI

DOI : 10.1186/1471-2164-8-401

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International

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Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis

auteur

Fabien Jammes, Philippe Lecomte, Janice de Almeida Engler, Frederique Bitton, Marie-Laure Martin-Magniette, Jean-Pierre J.-P. Renou, Pierre Abad, Bruno Favery

article

The Plant Journal, 2005, 44 (3), pp.447-458. ⟨10.1111/j.1365-313X.2005.02532.x⟩

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hal-02682347

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Journal articles

DOI

DOI : 10.1111/j.1365-313X.2005.02532.x

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International

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Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

auteur

Claire Lurin, Charles Andres, Sebastien Aubourg, M. Bellaoui, Frédérique Bitton, Clémence Bruyère, Michel M. Caboche, C. Debast, José Gualberto, B. Hoffmann, A. Lecharny, M. Le Ret, Marie-Laure Martin-Magniette, Hakim Mireau, Nemo Peeters, J.P. Renou, B. Szurek, Ludivine Taconnat, Ian Small

article

The Plant cell, 2004, 16 (7), pp.1-15

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hal-02679636

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The complete sequence of the Arabidopsis thaliana genome revealed thousands of previously unsuspecte .....

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Journal articles

pubmedId

: 15269332

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International

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